Wall clock time and date at job start Tue Mar 31 2020 10:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.47494 * 305.00021 * 15 13 12 17 17 O 1.42899 * 109.47573 * 184.99601 * 15 13 12 18 18 C 1.53000 * 109.47262 * 64.99633 * 15 13 12 19 19 C 1.50700 * 109.47536 * 185.00147 * 18 15 13 20 20 C 1.38457 * 120.02252 * 89.99760 * 19 18 15 21 21 F 1.35104 * 120.01558 * 359.97438 * 20 19 18 22 22 C 1.38441 * 119.96448 * 180.02562 * 20 19 18 23 23 C 1.38220 * 120.00255 * 359.97438 * 22 20 19 24 24 C 1.38203 * 120.03890 * 359.97438 * 23 22 20 25 25 C 1.38295 * 120.01932 * 269.72863 * 19 18 15 26 26 Cl 1.73602 * 119.99832 * 359.97438 * 25 19 18 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 32 32 H 0.96701 * 114.00071 * 300.00481 * 17 15 13 33 33 H 1.08999 * 109.47411 * 305.00391 * 18 15 13 34 34 H 1.09000 * 109.47159 * 65.00315 * 18 15 13 35 35 H 1.08000 * 119.99976 * 180.02562 * 22 20 19 36 36 H 1.08004 * 119.98448 * 180.02562 * 23 22 20 37 37 H 1.08002 * 119.98342 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 2.0274 -1.6030 3.7814 17 8 2.5871 0.1569 4.7076 18 6 4.0966 -1.1710 3.3666 19 6 4.5584 -1.9872 4.5463 20 6 4.3833 -3.3606 4.5495 21 9 3.7979 -3.9698 3.4952 22 6 4.8076 -4.1092 5.6341 23 6 5.4060 -3.4856 6.7127 24 6 5.5818 -2.1148 6.7091 25 6 5.1624 -1.3655 5.6238 26 17 5.3894 0.3556 5.6176 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7089 1.1612 -3.4844 31 1 2.2490 -1.6317 1.1527 32 1 3.1178 0.9587 4.6047 33 1 4.1579 -1.7744 2.4610 34 1 4.7330 -0.2923 3.2614 35 1 4.6716 -5.1806 5.6370 36 1 5.7372 -4.0699 7.5585 37 1 6.0499 -1.6284 7.5522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356010585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:01 Heat of formation + Delta-G solvation = -123.161855 kcal Electronic energy + Delta-G solvation = -24018.882253 eV Core-core repulsion = 20122.207063 eV Total energy + Delta-G solvation = -3896.675190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.15064 -39.91382 -39.04091 -36.71657 -36.42293 -34.75305 -33.25656 -32.32164 -30.73232 -29.77247 -28.12619 -25.29628 -24.77520 -23.14521 -21.85366 -21.09031 -19.56457 -18.16119 -17.79643 -17.11859 -16.42213 -16.12444 -15.87152 -15.70443 -15.15794 -15.02280 -14.93348 -14.28047 -13.96572 -13.68909 -13.54487 -13.29599 -12.97644 -12.54298 -12.39330 -12.00804 -11.75930 -11.66887 -11.64179 -11.51544 -11.12795 -11.01833 -10.94820 -10.76058 -10.60691 -10.34229 -10.24876 -9.22371 -9.06057 -9.00435 -8.74950 -8.56422 -7.96824 -6.13595 -4.23253 0.68746 0.73687 1.81510 3.04880 3.23528 3.27309 3.30655 3.32727 3.91400 3.95834 4.22485 4.35664 4.40658 4.51983 4.59471 4.85691 4.95171 5.06183 5.14587 5.18703 5.43726 5.49332 5.59252 5.73244 5.77983 5.85626 5.93370 6.40046 6.81012 6.95416 7.13424 7.40808 7.50012 7.62581 7.69664 7.89422 8.13014 8.59860 8.74478 9.03582 9.44167 10.92330 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.003651 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.880224 B = 7666.735650 C = 8425.047304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.703 5.703 13 C 0.474 3.526 14 O -0.545 6.545 15 C 0.098 3.902 16 H 0.118 0.882 17 O -0.535 6.535 18 C -0.117 4.117 19 C -0.098 4.098 20 C 0.115 3.885 21 F -0.127 7.127 22 C -0.150 4.150 23 C -0.084 4.084 24 C -0.121 4.121 25 C 0.005 3.995 26 Cl -0.049 7.049 27 H 0.027 0.973 28 H 0.091 0.909 29 H 0.015 0.985 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.378 0.622 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.348 -9.167 18.388 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.352 5.352 13 C 0.258 3.742 14 O -0.424 6.424 15 C 0.035 3.965 16 H 0.136 0.864 17 O -0.340 6.340 18 C -0.155 4.155 19 C -0.100 4.100 20 C 0.095 3.905 21 F -0.105 7.105 22 C -0.168 4.168 23 C -0.103 4.103 24 C -0.140 4.140 25 C -0.022 4.022 26 Cl -0.020 7.020 27 H 0.046 0.954 28 H 0.109 0.891 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.227 0.773 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.647 -8.496 18.440 22.478 hybrid contribution 0.636 -0.542 -1.363 1.599 sum 10.283 -9.039 17.077 21.887 Atomic orbital electron populations 1.22084 0.98400 0.99187 1.00961 1.18775 0.91111 0.93985 0.79961 0.93332 1.21208 1.32543 1.13239 0.90281 0.92023 1.24886 0.94788 0.94920 0.99064 1.69900 1.35822 1.22426 1.23914 0.86447 0.79186 0.79283 0.82185 1.20518 1.21062 1.19832 1.46596 1.64498 1.13622 1.10487 1.21153 0.79562 0.88139 0.85368 1.90674 1.51129 1.15888 1.84690 1.21812 0.94752 0.93412 0.86505 0.86437 1.86544 1.73850 1.35159 1.38452 1.21337 0.97173 1.00950 0.96007 1.19578 1.00925 0.92355 0.97139 1.17340 0.97734 0.89674 0.85736 1.91552 1.81404 1.82872 1.54707 1.21235 1.01202 1.01131 0.93280 1.20931 0.97580 0.93779 0.97976 1.21102 1.01246 0.93938 0.97676 1.20516 1.00679 0.85686 0.95341 1.98381 1.95151 1.10275 1.98182 0.95412 0.89081 0.96638 0.92546 0.77804 0.77276 0.88238 0.88716 0.84073 0.84120 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.71 2.56 -69.09 -0.18 6.53 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 12 N -0.70 -14.56 4.97 -54.94 -0.27 -14.83 16 13 C 0.47 9.48 7.13 -10.99 -0.08 9.40 16 14 O -0.55 -13.13 15.99 -14.30 -0.23 -13.36 16 15 C 0.10 1.51 3.37 -27.88 -0.09 1.41 16 16 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 17 O -0.53 -8.38 11.60 -55.09 -0.64 -9.02 16 18 C -0.12 -1.53 4.48 -27.88 -0.12 -1.65 16 19 C -0.10 -1.14 4.97 -104.52 -0.52 -1.66 16 20 C 0.11 1.25 7.24 -39.43 -0.29 0.96 16 21 F -0.13 -1.52 16.48 2.25 0.04 -1.48 16 22 C -0.15 -1.24 10.03 -39.51 -0.40 -1.64 16 23 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 24 C -0.12 -0.99 9.83 -39.54 -0.39 -1.38 16 25 C 0.00 0.05 6.11 -39.51 -0.24 -0.19 16 26 Cl -0.05 -0.53 24.96 -51.86 -1.29 -1.82 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.39 6.99 8.24 -40.82 -0.34 6.65 16 32 H 0.38 5.60 7.42 45.56 0.34 5.94 16 33 H 0.10 1.28 7.27 -51.93 -0.38 0.90 16 34 H 0.09 1.24 6.89 -51.93 -0.36 0.89 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -31.31 333.34 -8.04 -39.35 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -3.52 Total: 10.14 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.75 Total: -5.29 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.35 Total: -39.10 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.87 Total: -22.38 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.29 Total: -1.82 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.31 -8.04 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356010585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.812 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds