Wall clock time and date at job start Tue Mar 31 2020 10:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.47494 * 305.00021 * 15 13 12 17 17 O 1.42899 * 109.47573 * 184.99601 * 15 13 12 18 18 C 1.53000 * 109.47262 * 64.99633 * 15 13 12 19 19 C 1.50700 * 109.47536 * 185.00147 * 18 15 13 20 20 C 1.38457 * 120.02252 * 89.99760 * 19 18 15 21 21 F 1.35104 * 120.01558 * 359.97438 * 20 19 18 22 22 C 1.38441 * 119.96448 * 180.02562 * 20 19 18 23 23 C 1.38220 * 120.00255 * 359.97438 * 22 20 19 24 24 C 1.38203 * 120.03890 * 359.97438 * 23 22 20 25 25 C 1.38295 * 120.01932 * 269.72863 * 19 18 15 26 26 Cl 1.73602 * 119.99832 * 359.97438 * 25 19 18 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 32 32 H 0.96701 * 114.00071 * 300.00481 * 17 15 13 33 33 H 1.08999 * 109.47411 * 305.00391 * 18 15 13 34 34 H 1.09000 * 109.47159 * 65.00315 * 18 15 13 35 35 H 1.08000 * 119.99976 * 180.02562 * 22 20 19 36 36 H 1.08004 * 119.98448 * 180.02562 * 23 22 20 37 37 H 1.08002 * 119.98342 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 2.0274 -1.6030 3.7814 17 8 2.5871 0.1569 4.7076 18 6 4.0966 -1.1710 3.3666 19 6 4.5584 -1.9872 4.5463 20 6 4.3833 -3.3606 4.5495 21 9 3.7979 -3.9698 3.4952 22 6 4.8076 -4.1092 5.6341 23 6 5.4060 -3.4856 6.7127 24 6 5.5818 -2.1148 6.7091 25 6 5.1624 -1.3655 5.6238 26 17 5.3894 0.3556 5.6176 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7089 1.1612 -3.4844 31 1 2.2490 -1.6317 1.1527 32 1 3.1178 0.9587 4.6047 33 1 4.1579 -1.7744 2.4610 34 1 4.7330 -0.2923 3.2614 35 1 4.6716 -5.1806 5.6370 36 1 5.7372 -4.0699 7.5585 37 1 6.0499 -1.6284 7.5522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356010585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:01 Heat of formation + Delta-G solvation = -143.382352 kcal Electronic energy + Delta-G solvation = -24019.759079 eV Core-core repulsion = 20122.207063 eV Total energy + Delta-G solvation = -3897.552016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.96730 -41.18468 -40.13014 -37.85513 -37.44577 -36.62248 -34.60440 -33.88706 -31.47212 -31.32343 -29.48922 -27.37087 -25.97509 -23.84772 -23.13058 -22.46735 -21.32651 -19.59760 -18.73232 -18.00232 -17.91933 -17.53457 -17.06744 -16.82185 -16.60942 -16.25673 -15.88932 -15.71223 -15.32317 -14.96379 -14.53900 -14.48700 -14.26609 -14.03353 -13.81148 -13.36454 -13.10097 -13.02608 -12.83514 -12.75518 -12.60135 -12.44044 -12.39953 -12.31475 -12.15892 -12.00602 -11.69245 -11.13444 -10.67910 -10.55333 -9.85360 -9.75971 -9.69751 -8.19042 -6.36936 -0.00542 0.03160 1.06021 1.44489 1.45054 1.55690 1.60904 2.27529 2.42184 2.53108 3.11233 3.12391 3.22372 3.48830 3.65933 3.75894 3.92088 3.97469 4.07857 4.25838 4.46640 4.55849 4.69792 4.72221 4.88228 4.90950 5.05831 5.08789 5.13596 5.24772 5.38539 5.56040 5.63649 5.74334 5.84609 6.06315 6.37976 6.69867 6.85496 7.27839 7.43557 8.87345 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.003651 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.880224 B = 7666.735650 C = 8425.047304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.001 0.999 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.697 5.697 13 C 0.472 3.528 14 O -0.591 6.591 15 C 0.115 3.885 16 H 0.134 0.866 17 O -0.537 6.537 18 C -0.108 4.108 19 C -0.118 4.118 20 C 0.096 3.904 21 F -0.139 7.139 22 C -0.145 4.145 23 C -0.070 4.070 24 C -0.119 4.119 25 C -0.010 4.010 26 Cl -0.060 7.060 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.010 0.990 30 H 0.266 0.734 31 H 0.405 0.595 32 H 0.381 0.619 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.165 0.835 36 H 0.180 0.820 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.759 -11.922 19.805 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.018 0.982 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.347 5.347 13 C 0.258 3.742 14 O -0.472 6.472 15 C 0.052 3.948 16 H 0.151 0.849 17 O -0.343 6.343 18 C -0.146 4.146 19 C -0.119 4.119 20 C 0.076 3.924 21 F -0.117 7.117 22 C -0.164 4.164 23 C -0.087 4.087 24 C -0.137 4.137 25 C -0.037 4.037 26 Cl -0.031 7.031 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.029 0.971 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.231 0.769 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.183 0.817 36 H 0.198 0.802 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.075 -11.289 19.883 25.406 hybrid contribution 0.223 0.317 -1.695 1.739 sum 11.297 -10.973 18.189 24.059 Atomic orbital electron populations 1.21917 0.98362 0.99530 0.99584 1.18388 0.91109 0.92035 0.81894 0.98159 1.21525 1.32703 1.13591 0.90680 0.90756 1.25799 0.94822 0.95527 1.02330 1.70049 1.36957 1.23931 1.24660 0.85335 0.79017 0.78032 0.77909 1.19644 1.21209 1.18745 1.46334 1.64444 1.14257 1.09640 1.22056 0.78217 0.87678 0.86281 1.90648 1.52906 1.18115 1.85552 1.21736 0.96494 0.92873 0.83693 0.84851 1.86529 1.74102 1.35451 1.38205 1.21163 0.95216 1.01056 0.97188 1.19440 1.02809 0.92706 0.96985 1.17610 0.98703 0.89619 0.86421 1.91519 1.81792 1.82966 1.55437 1.21594 1.00071 1.02280 0.92456 1.21411 0.95545 0.93393 0.98382 1.21467 1.00353 0.94570 0.97352 1.20718 1.01526 0.85381 0.96050 1.98377 1.95224 1.11276 1.98221 0.94009 0.91308 0.97101 0.92507 0.75949 0.76942 0.88305 0.89323 0.81715 0.80222 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.00 9.26 71.98 0.67 -6.33 16 2 C 0.27 14.12 2.56 44.24 0.11 14.23 16 3 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 4 C -0.55 -28.99 8.73 25.60 0.22 -28.77 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 6 C 0.02 0.83 5.30 84.66 0.45 1.27 16 7 N -0.92 -52.88 11.32 21.45 0.24 -52.64 16 8 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 12 N -0.70 -29.26 4.97 -446.11 -2.22 -31.48 16 13 C 0.47 19.25 7.13 87.66 0.63 19.88 16 14 O -0.59 -29.60 15.99 15.96 0.26 -29.34 16 15 C 0.12 3.49 3.37 29.85 0.10 3.59 16 16 H 0.13 3.66 8.14 -2.39 -0.02 3.64 16 17 O -0.54 -16.77 11.60 -129.99 -1.51 -18.27 16 18 C -0.11 -2.80 4.48 29.85 0.13 -2.67 16 19 C -0.12 -2.59 4.97 -19.80 -0.10 -2.69 16 20 C 0.10 1.91 7.24 22.37 0.16 2.07 16 21 F -0.14 -3.12 16.48 44.97 0.74 -2.38 16 22 C -0.15 -1.92 10.03 22.31 0.22 -1.69 16 23 C -0.07 -0.68 10.04 22.26 0.22 -0.45 16 24 C -0.12 -1.57 9.83 22.30 0.22 -1.35 16 25 C -0.01 -0.19 6.11 22.32 0.14 -0.06 16 26 Cl -0.06 -1.25 24.96 -2.72 -0.07 -1.32 16 27 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 29 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.41 14.40 8.24 -92.70 -0.76 13.64 16 32 H 0.38 11.47 7.42 -74.06 -0.55 10.92 16 33 H 0.10 2.52 7.27 -2.39 -0.02 2.50 16 34 H 0.09 2.36 6.89 -2.39 -0.02 2.35 16 35 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -69.47 333.34 2.47 -67.00 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.18 Total: 27.39 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 3.18 Total: -2.97 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -1.97 Total: -84.12 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -1.25 Total: -47.62 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.74 Total: -2.38 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.07 Total: -1.32 kcal Total: -69.47 2.47 -67.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356010585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.385 kcal (2) G-P(sol) polarization free energy of solvation -69.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds