Wall clock time and date at job start Tue Mar 31 2020 11:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99677 * 2 1 4 4 C 1.53001 * 109.46973 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46861 * 64.99774 * 4 3 2 6 6 C 1.46505 * 120.00039 * 90.00356 * 5 4 3 7 7 C 1.50689 * 109.47225 * 85.02543 * 6 5 4 8 8 C 1.38250 * 119.98289 * 5.03121 * 7 6 5 9 9 C 1.38184 * 120.03659 * 179.72329 * 8 7 6 10 10 C 1.38485 * 120.00231 * 0.55290 * 9 8 7 11 11 F 1.35098 * 120.02009 * 179.74291 * 10 9 8 12 12 C 1.38417 * 119.96158 * 359.72359 * 10 9 8 13 13 C 1.38336 * 119.96296 * 0.02562 * 12 10 9 14 14 Cl 1.73596 * 120.00134 * 179.97438 * 13 12 10 15 15 C 1.34781 * 119.99951 * 270.27142 * 5 4 3 16 16 O 1.21685 * 119.99701 * 184.50474 * 15 5 4 17 17 C 1.46371 * 120.00045 * 4.51259 * 15 5 4 18 18 H 1.08005 * 119.99878 * 359.97438 * 17 15 5 19 19 C 1.40048 * 119.99760 * 179.97438 * 17 15 5 20 20 N 1.30665 * 120.00287 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99502 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47482 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46774 * 120.00093 * 21 19 17 24 24 H 1.48498 * 109.47162 * 239.99636 * 21 19 17 25 25 H 1.09001 * 109.47767 * 299.99850 * 1 2 3 26 26 H 1.08997 * 109.47580 * 60.00947 * 1 2 3 27 27 H 1.09005 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47232 * 59.99786 * 3 2 1 29 29 H 1.08998 * 109.46693 * 299.99553 * 3 2 1 30 30 H 1.09002 * 109.46898 * 305.00194 * 4 3 2 31 31 H 1.08990 * 109.46860 * 184.99529 * 4 3 2 32 32 H 1.08998 * 109.46642 * 205.02672 * 6 5 4 33 33 H 1.08998 * 109.46607 * 325.02424 * 6 5 4 34 34 H 1.08001 * 119.98055 * 0.02562 * 8 7 6 35 35 H 1.07998 * 119.99936 * 180.27595 * 9 8 7 36 36 H 1.08004 * 120.01592 * 180.02562 * 12 10 9 37 37 H 0.97003 * 120.00098 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2883 1.3998 -2.4131 7 6 5.7132 1.8807 -2.3183 8 6 6.5284 1.4289 -1.2973 9 6 7.8370 1.8647 -1.2127 10 6 8.3292 2.7633 -2.1443 11 9 9.6070 3.1936 -2.0589 12 6 7.5113 3.2201 -3.1633 13 6 6.2031 2.7788 -3.2496 14 17 5.1763 3.3516 -4.5268 15 6 4.0906 -0.7763 -1.3347 16 8 4.5347 -1.2871 -2.3460 17 6 3.6800 -1.6176 -0.2095 18 1 3.2860 -1.1642 0.6881 19 6 3.7979 -3.0104 -0.2969 20 7 4.2750 -3.5588 -1.3827 21 14 3.2745 -4.0839 1.1394 22 1 2.7726 -3.2253 2.2421 23 1 2.1963 -5.0062 0.7009 24 1 4.4379 -4.8739 1.6167 25 1 -0.3635 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8507 0.5686 0.8427 31 1 3.9783 2.1766 0.0901 32 1 4.1616 0.8160 -3.3248 33 1 3.6160 2.2575 -2.4344 34 1 6.1437 0.7311 -0.5681 35 1 8.4746 1.5079 -0.4174 36 1 7.8944 3.9207 -3.8906 37 1 4.3563 -4.5235 -1.4434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356599547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:09 Heat of formation + Delta-G solvation = -116.713377 kcal Electronic energy + Delta-G solvation = -24432.291903 eV Core-core repulsion = 20535.896340 eV Total energy + Delta-G solvation = -3896.395563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.98428 -40.78598 -39.39274 -38.26066 -37.48723 -35.91800 -34.44655 -32.72007 -31.97854 -30.01144 -28.66705 -27.07495 -26.37545 -24.11363 -23.53735 -22.88937 -20.83480 -18.93033 -18.39289 -17.83788 -17.65372 -17.09447 -16.76811 -16.70427 -16.46440 -16.01134 -15.88559 -15.65715 -15.45863 -14.89337 -14.71446 -14.51983 -14.11764 -13.99167 -13.31838 -13.11575 -13.05553 -12.88422 -12.80183 -12.69028 -12.63398 -12.33640 -12.29257 -12.11912 -11.97843 -11.90516 -11.62064 -10.81296 -10.30597 -10.01610 -9.63725 -9.55737 -9.10974 -8.14064 -6.57736 -0.06683 0.05714 0.97384 1.42370 1.44369 1.60475 2.31259 2.38492 2.58449 2.79206 3.16506 3.23581 3.67901 3.71495 3.90326 3.91016 4.17325 4.34017 4.41488 4.44336 4.48308 4.61161 4.64101 4.68152 4.73304 4.76696 4.85111 4.92848 4.96207 5.10462 5.15912 5.36546 5.56119 5.69251 5.91322 6.33307 6.50241 6.65089 7.09214 7.54592 8.64151 8.84340 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.004682 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.538845 B = 5979.099550 C = 6903.336870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.389 6.389 3 C 0.043 3.957 4 C 0.123 3.877 5 N -0.634 5.634 6 C 0.167 3.833 7 C -0.096 4.096 8 C -0.070 4.070 9 C -0.144 4.144 10 C 0.097 3.903 11 F -0.135 7.135 12 C -0.141 4.141 13 C -0.014 4.014 14 Cl -0.051 7.051 15 C 0.551 3.449 16 O -0.631 6.631 17 C -0.521 4.521 18 H 0.094 0.906 19 C 0.029 3.971 20 N -0.828 5.828 21 Si 0.980 3.020 22 H -0.247 1.247 23 H -0.277 1.277 24 H -0.275 1.275 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 15.218 3.401 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.308 6.308 3 C -0.034 4.034 4 C -0.001 4.001 5 N -0.369 5.369 6 C 0.043 3.957 7 C -0.098 4.098 8 C -0.089 4.089 9 C -0.163 4.163 10 C 0.077 3.923 11 F -0.114 7.114 12 C -0.160 4.160 13 C -0.042 4.042 14 Cl -0.022 7.022 15 C 0.359 3.641 16 O -0.518 6.518 17 C -0.558 4.558 18 H 0.112 0.888 19 C -0.184 4.184 20 N -0.459 5.459 21 Si 0.802 3.198 22 H -0.170 1.170 23 H -0.203 1.203 24 H -0.200 1.200 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.147 0.853 35 H 0.173 0.827 36 H 0.184 0.816 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.001 14.708 2.664 14.948 hybrid contribution -0.319 -0.541 0.057 0.630 sum -0.319 14.168 2.721 14.430 Atomic orbital electron populations 1.22778 0.81720 1.02382 1.00097 1.88329 1.19462 1.27765 1.95243 1.23116 0.94804 0.85088 1.00438 1.21550 0.92434 0.98848 0.87242 1.47799 1.71386 1.05790 1.11920 1.19938 0.90582 0.94344 0.90856 1.20540 0.98789 0.95875 0.94624 1.20938 0.92606 0.97554 0.97780 1.21413 0.96480 0.98029 1.00396 1.17426 0.79512 0.98072 0.97267 1.91501 1.35456 1.88474 1.95976 1.21034 0.91877 1.03257 0.99827 1.20378 0.92183 0.99163 0.92448 1.98362 1.67205 1.87538 1.49060 1.18508 0.77335 0.80322 0.87982 1.90571 1.52345 1.73477 1.35426 1.21364 1.42046 0.90651 1.01753 0.88786 1.26809 0.92788 1.00298 0.98534 1.70224 1.35908 1.11329 1.28442 0.85219 0.78074 0.77922 0.78626 1.16961 1.20303 1.19991 0.92540 0.94446 0.90776 0.90619 0.93851 0.90407 0.87977 0.92083 0.88385 0.85263 0.82697 0.81623 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.00 16 2 O -0.39 -14.43 7.93 -148.98 -1.18 -15.62 16 3 C 0.04 1.27 6.28 71.98 0.45 1.72 16 4 C 0.12 3.93 5.15 86.38 0.44 4.37 16 5 N -0.63 -26.34 1.28 -831.27 -1.07 -27.40 16 6 C 0.17 6.18 4.86 85.63 0.42 6.60 16 7 C -0.10 -3.22 5.88 -19.84 -0.12 -3.33 16 8 C -0.07 -2.38 9.14 22.26 0.20 -2.17 16 9 C -0.14 -4.13 10.03 22.32 0.22 -3.91 16 10 C 0.10 2.60 7.30 22.37 0.16 2.76 16 11 F -0.14 -3.49 17.27 44.97 0.78 -2.71 16 12 C -0.14 -3.59 9.81 22.34 0.22 -3.37 16 13 C -0.01 -0.41 6.31 22.32 0.14 -0.27 16 14 Cl -0.05 -1.31 27.88 -2.72 -0.08 -1.39 16 15 C 0.55 30.20 6.81 86.36 0.59 30.79 16 16 O -0.63 -41.03 14.56 -4.30 -0.06 -41.09 16 17 C -0.52 -28.22 7.39 24.83 0.18 -28.03 16 18 H 0.09 4.68 5.12 -2.91 -0.01 4.67 16 19 C 0.03 1.61 5.50 85.31 0.47 2.08 16 20 N -0.83 -50.63 11.83 21.83 0.26 -50.37 16 21 Si 0.98 41.55 29.56 68.60 2.03 43.57 16 22 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 2.69 6.32 -2.39 -0.02 2.68 16 31 H 0.10 2.52 8.07 -2.39 -0.02 2.50 16 32 H 0.06 2.72 7.34 -2.39 -0.02 2.70 16 33 H 0.10 2.98 7.96 -2.39 -0.02 2.97 16 34 H 0.13 4.95 6.22 -2.91 -0.02 4.93 16 35 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.27 15.00 8.29 -92.71 -0.77 14.23 16 Total: -1.00 -73.77 333.23 6.42 -67.35 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.10 Total: 18.42 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 4.64 Total: 9.23 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -0.81 Total: -77.77 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -1.24 Total: -56.71 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -73.77 6.42 -67.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356599547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.361 kcal (2) G-P(sol) polarization free energy of solvation -73.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds