Wall clock time and date at job start Tue Mar 31 2020 10:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38356 * 127.15087 * 2 1 4 4 C 1.39772 * 126.56618 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99978 * 0.27262 * 4 3 2 6 6 C 1.40085 * 120.00054 * 180.26483 * 4 3 2 7 7 N 1.30814 * 119.99802 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99904 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47099 * 60.00024 * 8 6 4 10 10 H 1.48493 * 109.46976 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47005 * 300.00356 * 8 6 4 12 12 N 1.33100 * 106.86968 * 180.23122 * 3 2 1 13 13 N 1.28522 * 109.74323 * 359.77419 * 12 3 2 14 14 C 1.32384 * 110.20408 * 0.02562 * 13 12 3 15 15 S 1.76198 * 126.25336 * 179.97438 * 14 13 12 16 16 C 1.80996 * 100.00517 * 0.02562 * 15 14 13 17 17 C 1.50701 * 109.47428 * 180.02562 * 16 15 14 18 18 C 1.34004 * 124.92416 * 90.62375 * 17 16 15 19 19 C 1.46781 * 106.18139 * 180.02562 * 18 17 16 20 20 C 1.39402 * 134.36877 * 179.30970 * 19 18 17 21 21 C 1.36746 * 119.71636 * 180.02562 * 20 19 18 22 22 C 1.38743 * 120.41604 * 0.02562 * 21 20 19 23 23 C 1.37851 * 120.68571 * 359.97438 * 22 21 20 24 24 C 1.38942 * 119.81866 * 0.27703 * 23 22 21 25 25 O 1.34449 * 124.91933 * 269.97362 * 17 16 15 26 26 H 1.09000 * 109.47038 * 270.17346 * 1 2 3 27 27 H 1.08997 * 109.47126 * 30.16912 * 1 2 3 28 28 H 1.08995 * 109.47326 * 150.17565 * 1 2 3 29 29 H 0.97001 * 119.99516 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47385 * 59.99710 * 16 15 14 31 31 H 1.09005 * 109.47017 * 300.00181 * 16 15 14 32 32 H 1.08001 * 126.90436 * 359.36915 * 18 17 16 33 33 H 1.08001 * 120.14515 * 359.97438 * 20 19 18 34 34 H 1.07998 * 119.79211 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.65364 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.08749 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8595 2.7005 0.0054 6 6 2.8768 3.4569 -0.0052 7 7 4.1476 3.1467 -0.0115 8 14 2.3530 5.2500 -0.0038 9 1 1.5484 5.5297 1.2127 10 1 3.5580 6.1176 -0.0112 11 1 1.5360 5.5279 -1.2122 12 7 3.5490 0.6414 -0.0051 13 7 3.5370 -0.6437 -0.0035 14 6 2.2904 -1.0893 0.0023 15 16 1.7874 -2.7779 0.0058 16 6 3.4059 -3.5881 0.0004 17 6 3.2191 -5.0835 0.0019 18 6 3.1319 -5.8469 -1.0960 19 6 2.9557 -7.2252 -0.6230 20 6 2.7940 -8.4586 -1.2522 21 6 2.6501 -9.5904 -0.4983 22 6 2.6637 -9.5180 0.8871 23 6 2.8226 -8.3073 1.5268 24 6 2.9651 -7.1446 0.7797 25 8 3.1283 -5.8467 1.1051 26 1 -0.3633 0.0031 1.0277 27 1 -0.3633 0.8884 -0.5164 28 1 -0.3634 -0.8915 -0.5111 29 1 4.8179 3.8478 -0.0158 30 1 3.9642 -3.2904 0.8879 31 1 3.9574 -3.2921 -0.8921 32 1 3.1716 -5.5135 -2.1225 33 1 2.7815 -8.5199 -2.3303 34 1 2.5251 -10.5466 -0.9845 35 1 2.5487 -10.4196 1.4704 36 1 2.8313 -8.2621 2.6059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357099944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:47 Heat of formation + Delta-G solvation = 98.525571 kcal Electronic energy + Delta-G solvation = -21824.018047 eV Core-core repulsion = 18402.061627 eV Total energy + Delta-G solvation = -3421.956419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.54759 -40.56038 -38.05487 -33.75266 -33.51502 -33.27484 -31.30730 -30.56396 -29.38131 -27.19930 -26.47645 -25.51594 -23.09446 -21.99523 -21.28367 -20.87187 -20.42472 -17.48913 -17.44773 -17.02503 -16.53400 -16.13529 -15.49708 -15.31521 -14.80408 -14.54612 -14.33480 -13.92180 -13.72351 -13.50023 -13.29601 -13.12654 -12.47848 -12.41931 -12.32569 -12.25135 -11.96017 -11.46407 -11.31600 -11.09555 -10.97657 -10.64620 -10.42493 -10.11898 -9.79647 -9.65595 -8.78004 -8.76025 -8.49745 -8.46247 -8.23471 -6.92894 -6.68738 -4.62357 0.65066 1.19470 1.65000 2.43063 2.63687 2.74813 2.89810 3.04123 3.06380 3.30893 3.55371 3.84087 4.18298 4.19767 4.37242 4.50926 4.74211 4.94959 5.03977 5.09085 5.10764 5.28090 5.32730 5.51416 5.57973 5.68196 5.76554 5.85474 6.01387 6.06428 6.08126 6.24490 6.29898 6.50556 6.70147 6.84200 7.07988 7.19737 7.43378 7.82746 8.13057 8.65745 8.80693 10.23626 10.57238 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.044457 B = 0.002421 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.677467 B =11562.459830 C =11760.709654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.514 5.514 3 C 0.348 3.652 4 C -0.446 4.446 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.736 5.736 8 Si 0.922 3.078 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.265 1.265 12 N -0.332 5.332 13 N -0.284 5.284 14 C 0.039 3.961 15 S -0.030 6.030 16 C -0.026 4.026 17 C 0.058 3.942 18 C -0.187 4.187 19 C -0.129 4.129 20 C -0.070 4.070 21 C -0.139 4.139 22 C -0.097 4.097 23 C -0.106 4.106 24 C 0.055 3.945 25 O -0.186 6.186 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.281 0.719 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.933 -18.414 -0.855 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.217 5.217 3 C 0.104 3.896 4 C -0.486 4.486 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.359 5.359 8 Si 0.745 3.255 9 H -0.189 1.189 10 H -0.200 1.200 11 H -0.189 1.189 12 N -0.180 5.180 13 N -0.131 5.131 14 C -0.332 4.332 15 S 0.199 5.801 16 C -0.174 4.174 17 C 0.009 3.991 18 C -0.210 4.210 19 C -0.130 4.130 20 C -0.088 4.088 21 C -0.158 4.158 22 C -0.115 4.115 23 C -0.125 4.125 24 C 0.007 3.993 25 O -0.087 6.087 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.181 0.819 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.239 -18.700 -0.572 19.183 hybrid contribution -0.515 1.527 -0.085 1.614 sum -4.754 -17.173 -0.656 17.831 Atomic orbital electron populations 1.21505 0.78450 1.02736 1.01709 1.46008 1.06101 1.05191 1.64357 1.21623 0.84710 0.88410 0.94876 1.18081 0.94725 0.86420 1.49372 0.89762 1.25810 0.94341 1.01364 0.93286 1.69997 1.00729 1.35205 1.30008 0.86160 0.78994 0.80529 0.79772 1.18930 1.20043 1.18939 1.75462 1.15273 0.97705 1.29531 1.74525 1.15061 1.07775 1.15728 1.25265 0.91697 0.92506 1.23747 1.84716 1.08024 0.91606 1.95795 1.21766 0.99703 0.86509 1.09383 1.21527 1.01617 0.92092 0.83875 1.22294 1.08783 0.90356 0.99545 1.19964 1.05534 0.94400 0.93066 1.20298 0.98223 0.90230 1.00059 1.20762 1.02734 0.98372 0.93887 1.20907 0.99476 0.96465 0.94683 1.19965 1.04294 0.88344 0.99873 1.19664 1.02342 0.83616 0.93657 1.83990 1.75144 1.15735 1.33878 0.92494 0.90268 0.91535 0.90843 0.86859 0.85639 0.81943 0.85483 0.85451 0.84889 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 10.87 59.85 0.65 2.48 16 2 N -0.51 -12.34 3.26 -123.18 -0.40 -12.75 16 3 C 0.35 9.65 7.53 -154.81 -1.17 8.48 16 4 C -0.45 -11.69 9.04 -38.32 -0.35 -12.04 16 5 H 0.08 1.99 7.31 -52.49 -0.38 1.61 16 6 C 0.08 1.97 5.50 -17.29 -0.10 1.87 16 7 N -0.74 -20.05 11.94 55.56 0.66 -19.38 16 8 Si 0.92 18.33 29.56 -169.99 -5.03 13.30 16 9 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 10 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 11 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 12 N -0.33 -9.90 10.48 31.26 0.33 -9.57 16 13 N -0.28 -7.69 11.62 30.89 0.36 -7.33 16 14 C 0.04 0.94 8.09 -87.29 -0.71 0.23 16 15 S -0.03 -0.55 21.77 -107.50 -2.34 -2.89 16 16 C -0.03 -0.41 5.73 36.01 0.21 -0.21 16 17 C 0.06 0.85 6.49 -35.80 -0.23 0.62 16 18 C -0.19 -2.46 11.01 -37.62 -0.41 -2.87 16 19 C -0.13 -1.64 6.40 -105.16 -0.67 -2.32 16 20 C -0.07 -0.71 10.05 -39.69 -0.40 -1.10 16 21 C -0.14 -1.18 9.98 -39.93 -0.40 -1.58 16 22 C -0.10 -0.82 10.01 -39.54 -0.40 -1.22 16 23 C -0.11 -1.12 10.07 -39.46 -0.40 -1.52 16 24 C 0.06 0.74 7.42 -38.47 -0.29 0.46 16 25 O -0.19 -2.84 10.58 3.93 0.04 -2.80 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.34 7.54 -51.93 -0.39 0.95 16 28 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 29 H 0.28 6.90 8.30 -40.82 -0.34 6.57 16 30 H 0.11 1.92 8.14 -51.92 -0.42 1.50 16 31 H 0.13 1.98 8.14 -51.91 -0.42 1.55 16 32 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -33.22 334.40 -9.69 -42.91 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.70 Total: 2.19 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -4.65 Total: -8.71 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.95 Total: -49.03 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.34 Total: -2.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.22 -9.69 -42.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357099944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.431 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds