Wall clock time and date at job start Tue Mar 31 2020 10:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38356 * 127.15087 * 2 1 4 4 C 1.39772 * 126.56618 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99978 * 0.27262 * 4 3 2 6 6 C 1.40085 * 120.00054 * 180.26483 * 4 3 2 7 7 N 1.30814 * 119.99802 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99904 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47099 * 60.00024 * 8 6 4 10 10 H 1.48493 * 109.46976 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47005 * 300.00356 * 8 6 4 12 12 N 1.33100 * 106.86968 * 180.23122 * 3 2 1 13 13 N 1.28522 * 109.74323 * 359.77419 * 12 3 2 14 14 C 1.32384 * 110.20408 * 0.02562 * 13 12 3 15 15 S 1.76198 * 126.25336 * 179.97438 * 14 13 12 16 16 C 1.80996 * 100.00517 * 0.02562 * 15 14 13 17 17 C 1.50701 * 109.47428 * 180.02562 * 16 15 14 18 18 C 1.34004 * 124.92416 * 90.62375 * 17 16 15 19 19 C 1.46781 * 106.18139 * 180.02562 * 18 17 16 20 20 C 1.39402 * 134.36877 * 179.30970 * 19 18 17 21 21 C 1.36746 * 119.71636 * 180.02562 * 20 19 18 22 22 C 1.38743 * 120.41604 * 0.02562 * 21 20 19 23 23 C 1.37851 * 120.68571 * 359.97438 * 22 21 20 24 24 C 1.38942 * 119.81866 * 0.27703 * 23 22 21 25 25 O 1.34449 * 124.91933 * 269.97362 * 17 16 15 26 26 H 1.09000 * 109.47038 * 270.17346 * 1 2 3 27 27 H 1.08997 * 109.47126 * 30.16912 * 1 2 3 28 28 H 1.08995 * 109.47326 * 150.17565 * 1 2 3 29 29 H 0.97001 * 119.99516 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47385 * 59.99710 * 16 15 14 31 31 H 1.09005 * 109.47017 * 300.00181 * 16 15 14 32 32 H 1.08001 * 126.90436 * 359.36915 * 18 17 16 33 33 H 1.08001 * 120.14515 * 359.97438 * 20 19 18 34 34 H 1.07998 * 119.79211 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.65364 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.08749 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8595 2.7005 0.0054 6 6 2.8768 3.4569 -0.0052 7 7 4.1476 3.1467 -0.0115 8 14 2.3530 5.2500 -0.0038 9 1 1.5484 5.5297 1.2127 10 1 3.5580 6.1176 -0.0112 11 1 1.5360 5.5279 -1.2122 12 7 3.5490 0.6414 -0.0051 13 7 3.5370 -0.6437 -0.0035 14 6 2.2904 -1.0893 0.0023 15 16 1.7874 -2.7779 0.0058 16 6 3.4059 -3.5881 0.0004 17 6 3.2191 -5.0835 0.0019 18 6 3.1319 -5.8469 -1.0960 19 6 2.9557 -7.2252 -0.6230 20 6 2.7940 -8.4586 -1.2522 21 6 2.6501 -9.5904 -0.4983 22 6 2.6637 -9.5180 0.8871 23 6 2.8226 -8.3073 1.5268 24 6 2.9651 -7.1446 0.7797 25 8 3.1283 -5.8467 1.1051 26 1 -0.3633 0.0031 1.0277 27 1 -0.3633 0.8884 -0.5164 28 1 -0.3634 -0.8915 -0.5111 29 1 4.8179 3.8478 -0.0158 30 1 3.9642 -3.2904 0.8879 31 1 3.9574 -3.2921 -0.8921 32 1 3.1716 -5.5135 -2.1225 33 1 2.7815 -8.5199 -2.3303 34 1 2.5251 -10.5466 -0.9845 35 1 2.5487 -10.4196 1.4704 36 1 2.8313 -8.2621 2.6059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357099944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:47 Heat of formation + Delta-G solvation = 80.194121 kcal Electronic energy + Delta-G solvation = -21824.812958 eV Core-core repulsion = 18402.061627 eV Total energy + Delta-G solvation = -3422.751330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.51987 -42.48798 -38.84974 -35.64701 -35.20879 -34.44808 -32.31880 -31.36264 -31.31643 -28.49462 -27.97835 -27.33343 -23.97333 -22.95399 -22.79681 -22.48703 -21.96298 -19.29934 -18.38397 -18.27456 -17.62825 -17.46894 -17.13709 -16.60026 -16.27091 -16.18956 -15.38556 -15.19007 -15.00416 -14.76698 -14.60270 -14.07651 -13.95867 -13.82133 -13.47783 -13.27160 -13.13982 -12.93297 -12.78097 -12.74353 -12.17415 -12.00207 -11.86841 -11.74738 -11.44414 -11.10346 -10.61871 -10.41514 -10.32242 -9.60790 -9.17607 -8.62965 -8.55646 -6.60996 -0.33605 0.34560 0.41997 0.98898 1.17953 1.41641 1.47322 1.57150 1.60750 1.64686 2.17889 2.42164 2.48233 2.77200 3.17172 3.32368 3.68111 3.83466 4.02202 4.05618 4.08939 4.19585 4.36745 4.43291 4.47342 4.54753 4.60215 4.71555 4.84465 4.91134 4.93539 5.18815 5.30089 5.33294 5.43733 5.51469 5.53724 5.73573 5.99548 6.15087 6.19968 6.73987 6.89423 8.39524 8.60361 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.044457 B = 0.002421 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.677467 B =11562.459830 C =11760.709654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.521 5.521 3 C 0.318 3.682 4 C -0.470 4.470 5 H 0.104 0.896 6 C 0.028 3.972 7 N -0.787 5.787 8 Si 1.008 2.992 9 H -0.254 1.254 10 H -0.272 1.272 11 H -0.253 1.253 12 N -0.387 5.387 13 N -0.327 5.327 14 C 0.051 3.949 15 S 0.011 5.989 16 C -0.018 4.018 17 C 0.028 3.972 18 C -0.170 4.170 19 C -0.154 4.154 20 C -0.075 4.075 21 C -0.134 4.134 22 C -0.083 4.083 23 C -0.124 4.124 24 C 0.028 3.972 25 O -0.209 6.209 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.285 0.715 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.181 0.819 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 -20.603 -1.411 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.222 5.222 3 C 0.072 3.928 4 C -0.510 4.510 5 H 0.122 0.878 6 C -0.193 4.193 7 N -0.412 5.412 8 Si 0.826 3.174 9 H -0.178 1.178 10 H -0.197 1.197 11 H -0.176 1.176 12 N -0.234 5.234 13 N -0.172 5.172 14 C -0.323 4.323 15 S 0.240 5.760 16 C -0.166 4.166 17 C -0.020 4.020 18 C -0.193 4.193 19 C -0.155 4.155 20 C -0.093 4.093 21 C -0.152 4.152 22 C -0.100 4.100 23 C -0.142 4.142 24 C -0.020 4.020 25 O -0.112 6.112 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.198 0.802 33 H 0.167 0.833 34 H 0.181 0.819 35 H 0.187 0.813 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.364 -20.906 -1.128 21.883 hybrid contribution 0.081 1.784 0.088 1.788 sum -6.283 -19.123 -1.040 20.155 Atomic orbital electron populations 1.21867 0.75235 1.04563 1.03358 1.46351 1.08103 1.04297 1.63464 1.22055 0.85068 0.89917 0.95755 1.18609 0.96054 0.86395 1.49919 0.87762 1.27012 0.93910 1.06556 0.91814 1.70149 1.02403 1.37152 1.31495 0.84890 0.78686 0.73425 0.80394 1.17790 1.19667 1.17642 1.75321 1.17326 0.99030 1.31725 1.74402 1.17018 1.07233 1.18532 1.26290 0.91226 0.95251 1.19538 1.84528 1.09282 0.87131 1.95091 1.21664 0.98308 0.87891 1.08722 1.21209 1.05010 0.91215 0.84602 1.22620 1.06096 0.90758 0.99821 1.20217 1.07195 0.95085 0.93019 1.20679 0.97514 0.89604 1.01490 1.21256 1.00665 0.99293 0.93958 1.21430 0.96614 0.96752 0.95239 1.20366 1.04866 0.88238 1.00777 1.20227 1.03509 0.83437 0.94815 1.83918 1.76062 1.16886 1.34347 0.90841 0.89046 0.89143 0.90462 0.88384 0.85596 0.80180 0.83321 0.81892 0.81262 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.24 10.87 127.77 1.39 4.63 16 2 N -0.52 -25.31 3.26 -543.64 -1.77 -27.08 16 3 C 0.32 18.25 7.53 133.23 1.00 19.26 16 4 C -0.47 -25.08 9.04 23.09 0.21 -24.87 16 5 H 0.10 4.90 7.31 -2.91 -0.02 4.88 16 6 C 0.03 1.44 5.50 85.29 0.47 1.91 16 7 N -0.79 -44.69 11.94 21.86 0.26 -44.43 16 8 Si 1.01 37.60 29.56 68.60 2.03 39.63 16 9 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 10 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 11 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 12 N -0.39 -24.31 10.48 -55.02 -0.58 -24.89 16 13 N -0.33 -18.57 11.62 -56.18 -0.65 -19.22 16 14 C 0.05 2.46 8.09 179.18 1.45 3.91 16 15 S 0.01 0.39 21.77 -56.49 -1.23 -0.84 16 16 C -0.02 -0.60 5.73 71.24 0.41 -0.19 16 17 C 0.03 0.85 6.49 24.72 0.16 1.01 16 18 C -0.17 -4.39 11.01 23.54 0.26 -4.13 16 19 C -0.15 -3.75 6.40 -20.21 -0.13 -3.88 16 20 C -0.07 -1.29 10.05 22.20 0.22 -1.07 16 21 C -0.13 -1.72 9.98 22.04 0.22 -1.50 16 22 C -0.08 -1.10 10.01 22.30 0.22 -0.87 16 23 C -0.12 -2.42 10.07 22.35 0.23 -2.19 16 24 C 0.03 0.73 7.42 22.99 0.17 0.90 16 25 O -0.21 -6.58 10.58 -8.87 -0.09 -6.68 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.09 2.97 7.54 -2.39 -0.02 2.95 16 28 H 0.09 2.71 7.84 -2.39 -0.02 2.69 16 29 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 30 H 0.10 3.56 8.14 -2.40 -0.02 3.54 16 31 H 0.13 4.15 8.14 -2.39 -0.02 4.13 16 32 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 35 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -77.38 334.40 5.36 -72.02 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.12 Total: 18.57 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 6.28 Total: -7.09 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -2.74 Total: -115.61 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.09 Total: -6.68 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -1.23 Total: -0.84 kcal Total: -77.38 5.36 -72.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357099944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.212 kcal (2) G-P(sol) polarization free energy of solvation -77.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds