Wall clock time and date at job start Tue Mar 31 2020 11:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86795 * 120.00048 * 2 1 4 4 H 1.48497 * 109.47054 * 240.00064 * 3 2 1 5 5 H 1.48504 * 109.47040 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47615 * 119.99573 * 3 2 1 7 7 C 1.38945 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00385 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00224 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99761 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00342 * 179.97438 * 10 9 7 13 13 H 1.08994 * 115.55820 * 34.30809 * 12 10 9 14 14 C 1.52998 * 117.49827 * 248.61996 * 12 10 9 15 15 C 1.52991 * 117.49936 * 179.97438 * 12 10 9 16 16 H 1.09007 * 117.52045 * 214.97070 * 15 12 10 17 17 C 1.50703 * 117.50267 * 0.02562 * 15 12 10 18 18 C 1.38262 * 119.94363 * 240.01784 * 17 15 12 19 19 C 1.38145 * 120.05942 * 179.97438 * 18 17 15 20 20 C 1.38732 * 119.94244 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05873 * 180.02562 * 20 19 18 22 22 C 1.42905 * 117.00039 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46886 * 60.00372 * 22 21 20 24 24 F 1.39900 * 109.46869 * 180.02562 * 22 21 20 25 25 F 1.39895 * 109.47068 * 300.00158 * 22 21 20 26 26 C 1.38738 * 119.88718 * 0.27269 * 20 19 18 27 27 C 1.38149 * 119.94056 * 359.43355 * 26 20 19 28 28 H 0.96998 * 120.00052 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99894 * 359.97438 * 9 7 2 30 30 H 1.09000 * 117.49831 * 145.01492 * 14 12 10 31 31 H 1.08999 * 117.51858 * 359.97438 * 14 12 10 32 32 H 1.08009 * 119.97583 * 359.96692 * 18 17 15 33 33 H 1.08000 * 120.03441 * 179.97438 * 19 18 17 34 34 H 1.07995 * 120.02746 * 179.71906 * 26 20 19 35 35 H 1.07996 * 119.96832 * 180.27565 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0011 13 1 0.3051 -4.8643 -0.5527 14 6 1.3196 -5.7219 1.2650 15 6 2.0659 -6.1533 0.0005 16 1 1.6680 -7.0037 -0.5533 17 6 3.5672 -6.0219 -0.0001 18 6 4.3065 -6.5579 -1.0382 19 6 5.6827 -6.4385 -1.0414 20 6 6.3230 -5.7794 -0.0020 21 8 7.6767 -5.6601 -0.0030 22 6 8.2679 -4.9685 1.0990 23 9 7.9498 -5.6305 2.2897 24 9 9.6573 -4.9376 0.9389 25 9 7.7752 -3.6601 1.1468 26 6 5.5793 -5.2469 1.0411 27 6 4.2028 -5.3638 1.0365 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3906 0.0005 30 1 0.4306 -6.2882 1.5427 31 1 1.9147 -5.3434 2.0961 32 1 3.8076 -7.0707 -1.8475 33 1 6.2598 -6.8577 -1.8524 34 1 6.0758 -4.7374 1.8537 35 1 3.6232 -4.9456 1.8461 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359850175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:03 Heat of formation + Delta-G solvation = -188.890909 kcal Electronic energy + Delta-G solvation = -26283.782581 eV Core-core repulsion = 21832.460486 eV Total energy + Delta-G solvation = -4451.322095 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.50730 -49.22627 -49.10224 -41.46482 -40.51133 -38.73595 -36.88717 -35.74444 -33.22228 -31.96080 -31.00912 -27.59654 -27.00802 -24.79518 -24.45251 -23.68558 -21.79927 -20.73366 -20.49124 -20.21354 -20.10755 -19.67845 -18.31686 -17.52219 -16.77880 -16.49758 -16.26255 -16.11385 -15.90049 -15.78720 -15.62230 -15.54731 -15.47830 -15.24777 -15.20506 -15.12388 -14.81920 -14.23948 -14.15560 -14.01412 -13.60793 -13.26496 -12.97780 -12.86746 -12.43435 -12.30702 -12.15708 -11.90338 -11.55738 -11.35054 -11.20145 -10.36128 -10.00440 -9.71173 -8.89826 -8.46135 -5.93053 0.29395 0.45672 0.51511 1.36321 1.38741 1.48877 1.79549 1.96788 2.27995 2.63713 2.74361 2.92561 3.11352 3.19025 3.36909 3.73839 3.79440 3.87357 4.04498 4.11664 4.26161 4.35894 4.46622 4.58613 4.65593 4.89998 4.97755 5.10227 5.13330 5.25729 5.38731 5.41552 5.51019 5.77978 6.01956 6.08713 6.62236 7.14796 7.61624 8.17868 8.70915 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.004476 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.651863 B = 6253.555837 C = 7941.977934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.986 3.014 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.327 4.327 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.459 3.541 11 O -0.602 6.602 12 C -0.179 4.179 13 H 0.138 0.862 14 C -0.140 4.140 15 C -0.079 4.079 16 H 0.157 0.843 17 C -0.063 4.063 18 C -0.080 4.080 19 C -0.139 4.139 20 C 0.078 3.922 21 O -0.316 6.316 22 C 0.606 3.394 23 F -0.165 7.165 24 F -0.128 7.128 25 F -0.173 7.173 26 C -0.214 4.214 27 C -0.016 4.016 28 H 0.277 0.723 29 H 0.394 0.606 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.118 0.882 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.080 -15.064 0.956 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.457 4.457 8 H 0.095 0.905 9 N -0.207 5.207 10 C 0.247 3.753 11 O -0.489 6.489 12 C -0.200 4.200 13 H 0.156 0.844 14 C -0.178 4.178 15 C -0.097 4.097 16 H 0.175 0.825 17 C -0.063 4.063 18 C -0.097 4.097 19 C -0.157 4.157 20 C 0.037 3.963 21 O -0.237 6.237 22 C 0.515 3.485 23 F -0.147 7.147 24 F -0.110 7.110 25 F -0.155 7.155 26 C -0.233 4.233 27 C -0.034 4.034 28 H 0.086 0.914 29 H 0.228 0.772 30 H 0.159 0.841 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.173 0.827 34 H 0.136 0.864 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.881 -14.918 0.856 16.894 hybrid contribution 0.089 1.732 0.441 1.789 sum 7.971 -13.186 1.297 15.462 Atomic orbital electron populations 1.69664 1.06709 1.29178 1.50585 1.25936 0.96447 1.02154 0.96596 0.85098 0.77852 0.77289 0.78780 1.19960 1.19407 1.19960 1.19570 0.92528 0.84095 1.49463 0.90496 1.41953 1.09227 1.04655 1.64827 1.20096 0.87867 0.85241 0.82072 1.90561 1.14829 1.87126 1.56352 1.22234 1.02038 0.89491 1.06283 0.84430 1.23218 1.03330 1.00760 0.90452 1.21217 0.89018 0.96998 1.02487 0.82545 1.19200 0.94465 0.98004 0.94663 1.21026 0.92041 0.98828 0.97854 1.20532 0.94743 1.02578 0.97832 1.18828 0.77990 1.01596 0.97925 1.86320 1.22330 1.72370 1.42645 1.19292 0.76621 0.75548 0.76996 1.93281 1.92613 1.80812 1.47993 1.93293 1.26193 1.96128 1.95359 1.93319 1.87765 1.38531 1.95910 1.21319 0.96235 1.05953 0.99760 1.20564 0.92520 0.92325 0.97986 0.91402 0.77229 0.84140 0.89861 0.81839 0.82672 0.86375 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.79 13.05 21.66 0.28 -49.50 16 2 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 3 Si 0.99 43.49 29.55 68.60 2.03 45.51 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.33 -18.42 9.68 84.04 0.81 -17.61 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -28.79 5.29 -306.98 -1.62 -30.41 16 10 C 0.46 20.71 7.42 87.66 0.65 21.36 16 11 O -0.60 -30.44 11.27 -3.08 -0.03 -30.48 16 12 C -0.18 -5.62 6.19 -11.54 -0.07 -5.69 16 13 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 14 C -0.14 -3.49 9.58 30.61 0.29 -3.19 16 15 C -0.08 -2.01 6.04 -11.53 -0.07 -2.08 16 16 H 0.16 2.68 8.14 -2.38 -0.02 2.66 16 17 C -0.06 -1.95 4.37 -19.85 -0.09 -2.03 16 18 C -0.08 -2.13 9.73 22.25 0.22 -1.92 16 19 C -0.14 -3.86 9.99 22.37 0.22 -3.64 16 20 C 0.08 2.53 6.48 22.51 0.15 2.68 16 21 O -0.32 -9.52 10.37 -92.39 -0.96 -10.48 16 22 C 0.61 16.97 3.42 113.37 0.39 17.36 16 23 F -0.16 -4.45 15.54 44.97 0.70 -3.75 16 24 F -0.13 -3.15 17.53 44.97 0.79 -2.37 16 25 F -0.17 -5.54 15.58 44.97 0.70 -4.84 16 26 C -0.21 -7.56 8.26 22.37 0.18 -7.38 16 27 C -0.02 -0.56 6.16 22.25 0.14 -0.42 16 28 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.39 19.14 7.90 -92.71 -0.73 18.41 16 30 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.37 6.17 -2.39 -0.01 2.36 16 32 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 34 H 0.12 4.12 5.10 -2.91 -0.01 4.11 16 35 H 0.11 4.06 5.77 -2.91 -0.02 4.04 16 Total: -1.00 -65.80 313.28 5.62 -60.18 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.45 Total: 28.84 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 3.29 Total: -2.72 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -1.34 Total: -79.91 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.99 Total: -40.95 kcal Atomic # 9 Polarization: -13.14 SS G_CDS: 2.19 Total: -10.95 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -65.80 5.62 -60.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359850175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.707 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds