Wall clock time and date at job start Tue Mar 31 2020 11:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86802 * 119.99869 * 2 1 4 4 H 1.48496 * 109.47073 * 240.00089 * 3 2 1 5 5 H 1.48502 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46912 * 120.00423 * 3 2 1 7 7 C 1.38948 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99921 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00423 * 359.97438 * 7 2 1 10 10 C 1.34768 * 120.00234 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00260 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00293 * 180.02562 * 10 9 7 13 13 H 1.09001 * 115.54529 * 325.66848 * 12 10 9 14 14 C 1.53069 * 117.49490 * 111.39543 * 12 10 9 15 15 C 1.52997 * 117.50187 * 179.97438 * 12 10 9 16 16 H 1.09000 * 117.49531 * 0.02562 * 15 12 10 17 17 C 1.50697 * 117.49908 * 145.02081 * 15 12 10 18 18 C 1.38267 * 119.94354 * 239.91198 * 17 15 12 19 19 C 1.38145 * 120.05170 * 180.02562 * 18 17 15 20 20 C 1.38726 * 119.95000 * 359.97438 * 19 18 17 21 21 O 1.35901 * 120.05827 * 180.02562 * 20 19 18 22 22 C 1.42900 * 117.00024 * 179.97438 * 21 20 19 23 23 F 1.39905 * 109.47006 * 60.00330 * 22 21 20 24 24 F 1.39900 * 109.47309 * 300.00630 * 22 21 20 25 25 F 1.39897 * 109.47274 * 180.02562 * 22 21 20 26 26 C 1.38736 * 119.88790 * 0.27938 * 20 19 18 27 27 C 1.38145 * 119.94033 * 359.42178 * 26 20 19 28 28 H 0.96996 * 119.99812 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99245 * 0.02562 * 9 7 2 30 30 H 1.09002 * 117.49300 * 0.02562 * 14 12 10 31 31 H 1.09000 * 117.51677 * 214.97081 * 14 12 10 32 32 H 1.08000 * 119.97243 * 359.97399 * 18 17 15 33 33 H 1.08006 * 120.02304 * 180.02562 * 19 18 17 34 34 H 1.07997 * 120.03096 * 179.72267 * 26 20 19 35 35 H 1.07997 * 119.97332 * 180.31797 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2439 -4.8630 -0.0011 13 1 0.3053 -4.8642 0.5532 14 6 1.3201 -5.7223 -1.2655 15 6 2.0660 -6.1533 -0.0017 16 1 3.1518 -6.0582 -0.0012 17 6 1.5161 -7.3290 0.7641 18 6 2.2435 -7.8756 1.8052 19 6 1.7418 -8.9537 2.5084 20 6 0.5070 -9.4876 2.1695 21 8 0.0112 -10.5479 2.8601 22 6 -1.2663 -11.0449 2.4565 23 9 -1.2044 -11.4612 1.1222 24 9 -2.2227 -10.0320 2.5850 25 9 -1.6228 -12.1279 3.2672 26 6 -0.2184 -8.9407 1.1211 27 6 0.2847 -7.8587 0.4250 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 1.9155 -5.3436 -2.0963 31 1 0.4314 -6.2891 -1.5435 32 1 3.2049 -7.4600 2.0683 33 1 2.3102 -9.3801 3.3218 34 1 -1.1779 -9.3573 0.8525 35 1 -0.2819 -7.4293 -0.3879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359850201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:06 Heat of formation + Delta-G solvation = -183.897189 kcal Electronic energy + Delta-G solvation = -25011.184103 eV Core-core repulsion = 20560.078551 eV Total energy + Delta-G solvation = -4451.105551 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.74015 -48.47132 -48.32585 -40.56402 -39.12439 -37.84371 -35.66292 -33.87962 -31.30366 -31.24679 -30.20777 -26.41066 -25.58092 -23.90718 -23.19748 -22.61262 -20.75706 -19.84945 -19.44837 -19.30781 -18.96766 -17.85942 -17.23158 -16.45065 -15.75781 -15.50915 -15.30252 -15.09272 -14.82230 -14.79499 -14.73122 -14.66945 -14.43625 -14.41051 -14.00400 -13.64950 -13.52776 -13.45490 -13.06570 -12.58739 -12.47084 -11.71417 -11.61854 -11.43949 -11.13772 -11.07013 -10.49318 -10.40211 -10.21639 -10.10618 -9.53479 -9.25907 -8.57142 -8.32076 -8.02091 -6.46318 -3.87077 0.98826 1.09727 1.20799 2.55003 3.14114 3.23452 3.27123 3.30642 3.47954 3.63992 3.74119 4.12056 4.35015 4.44498 4.52004 4.56648 4.89697 5.00749 5.12826 5.14996 5.21568 5.30444 5.44707 5.58504 5.74475 5.81715 5.92827 6.02317 6.20998 6.21646 6.32747 6.43007 6.60285 6.73706 7.50527 8.00910 8.55567 9.12209 9.49928 10.01039 10.71019 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.002391 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.312071 B =11706.502426 C =12052.866086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.553 5.553 10 C 0.465 3.535 11 O -0.597 6.597 12 C -0.150 4.150 13 H 0.112 0.888 14 C -0.153 4.153 15 C -0.097 4.097 16 H 0.127 0.873 17 C -0.053 4.053 18 C -0.075 4.075 19 C -0.119 4.119 20 C 0.088 3.912 21 O -0.312 6.312 22 C 0.603 3.397 23 F -0.166 7.166 24 F -0.165 7.165 25 F -0.134 7.134 26 C -0.185 4.185 27 C -0.082 4.082 28 H 0.273 0.727 29 H 0.394 0.606 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 -21.507 3.205 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.187 5.187 10 C 0.251 3.749 11 O -0.483 6.483 12 C -0.172 4.172 13 H 0.130 0.870 14 C -0.190 4.190 15 C -0.115 4.115 16 H 0.145 0.855 17 C -0.053 4.053 18 C -0.093 4.093 19 C -0.137 4.137 20 C 0.047 3.953 21 O -0.232 6.232 22 C 0.513 3.487 23 F -0.148 7.148 24 F -0.147 7.147 25 F -0.116 7.116 26 C -0.204 4.204 27 C -0.100 4.100 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.614 -21.416 3.350 21.975 hybrid contribution -0.705 0.722 -0.024 1.010 sum -4.320 -20.694 3.326 21.400 Atomic orbital electron populations 1.69610 1.05973 1.28424 1.49918 1.25293 0.95647 0.99814 0.97066 0.85902 0.78786 0.80320 0.79134 1.19824 1.20903 1.19823 1.19688 0.93390 0.82209 1.47927 0.87892 1.41806 1.09327 1.04438 1.63136 1.18923 0.87532 0.83874 0.84565 1.90507 1.13783 1.87097 1.56890 1.22333 1.00963 0.91234 1.02653 0.86995 1.23066 1.02306 1.02029 0.91625 1.20993 0.99640 0.91477 0.99409 0.85465 1.19353 0.94159 0.95920 0.95875 1.20926 1.00295 0.94138 0.93926 1.20389 0.93231 0.97825 1.02282 1.18682 0.95076 0.87793 0.93777 1.86395 1.31356 1.47780 1.57656 1.19358 0.78852 0.76016 0.74520 1.93301 1.95887 1.90470 1.35147 1.93312 1.65381 1.60550 1.95434 1.93299 1.90752 1.54021 1.73507 1.21447 1.01159 1.00174 0.97592 1.20926 0.95288 0.94624 0.99130 0.91692 0.77242 0.87881 0.88335 0.84121 0.84428 0.85066 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 2 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.55 -13.99 5.29 -10.96 -0.06 -14.05 16 10 C 0.47 10.90 7.57 -10.99 -0.08 10.82 16 11 O -0.60 -15.96 15.83 5.55 0.09 -15.88 16 12 C -0.15 -2.62 5.82 -91.74 -0.53 -3.15 16 13 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 14 C -0.15 -2.19 9.56 -26.72 -0.26 -2.44 16 15 C -0.10 -1.44 5.55 -91.80 -0.51 -1.95 16 16 H 0.13 2.07 7.67 -51.93 -0.40 1.67 16 17 C -0.05 -0.67 5.61 -104.60 -0.59 -1.26 16 18 C -0.07 -0.87 9.73 -39.60 -0.39 -1.25 16 19 C -0.12 -1.27 9.99 -39.44 -0.39 -1.67 16 20 C 0.09 1.00 6.48 -39.22 -0.25 0.75 16 21 O -0.31 -3.35 10.37 -19.43 -0.20 -3.55 16 22 C 0.60 5.73 3.42 101.05 0.35 6.08 16 23 F -0.17 -1.56 15.54 2.25 0.04 -1.52 16 24 F -0.16 -1.62 15.58 2.25 0.04 -1.58 16 25 F -0.13 -1.20 17.53 2.25 0.04 -1.16 16 26 C -0.19 -2.07 8.26 -39.43 -0.33 -2.39 16 27 C -0.08 -0.95 9.29 -39.60 -0.37 -1.31 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 30 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.10 1.12 6.18 -51.93 -0.32 0.80 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 34 H 0.13 1.30 5.10 -52.49 -0.27 1.04 16 35 H 0.14 1.37 6.02 -52.49 -0.32 1.05 16 LS Contribution 321.26 15.07 4.84 4.84 Total: -1.00 -30.23 321.26 -5.94 -36.16 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -2.83 Total: 10.26 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -3.59 Total: -5.77 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.67 Total: -37.59 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.11 Total: -19.43 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.11 Total: -4.26 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.23 -5.94 -36.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359850201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.734 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds