Wall clock time and date at job start Tue Mar 31 2020 11:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48500 * 109.47088 * 90.00226 * 3 2 1 5 5 H 1.48505 * 109.47152 * 209.99703 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99703 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.07992 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99958 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99768 * 179.97438 * 10 9 7 13 13 H 1.08998 * 115.55180 * 325.66643 * 12 10 9 14 14 C 1.52996 * 117.49613 * 111.37674 * 12 10 9 15 15 C 1.52998 * 117.49474 * 179.97438 * 12 10 9 16 16 H 1.09002 * 117.49609 * 145.02292 * 15 12 10 17 17 C 1.50699 * 117.50216 * 0.02562 * 15 12 10 18 18 C 1.38263 * 119.94431 * 299.72959 * 17 15 12 19 19 C 1.38151 * 120.05436 * 179.72125 * 18 17 15 20 20 C 1.38732 * 119.94189 * 0.54748 * 19 18 17 21 21 O 1.35898 * 120.05529 * 179.74601 * 20 19 18 22 22 C 1.42901 * 116.99861 * 359.97438 * 21 20 19 23 23 F 1.39902 * 109.47141 * 60.00308 * 22 21 20 24 24 F 1.39906 * 109.47190 * 179.97438 * 22 21 20 25 25 F 1.39895 * 109.47491 * 300.00102 * 22 21 20 26 26 C 1.38733 * 119.89122 * 359.72889 * 20 19 18 27 27 C 1.38143 * 119.94300 * 359.97438 * 26 20 19 28 28 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 29 29 H 0.97000 * 119.99715 * 359.97438 * 9 7 2 30 30 H 1.09004 * 117.49857 * 214.97597 * 14 12 10 31 31 H 1.08995 * 117.50401 * 359.97438 * 14 12 10 32 32 H 1.07992 * 119.97328 * 359.97438 * 18 17 15 33 33 H 1.08000 * 120.02458 * 180.27204 * 19 18 17 34 34 H 1.07999 * 120.02732 * 180.02562 * 26 20 19 35 35 H 1.08000 * 119.97142 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4456 2.6527 -0.7001 7 6 2.0090 -1.2033 -0.0057 8 1 3.0889 -1.2032 -0.0061 9 7 1.3234 -2.3906 -0.0118 10 6 1.9973 -3.5578 -0.0178 11 8 3.2103 -3.5577 -0.0183 12 6 1.2438 -4.8629 -0.0240 13 1 0.3057 -4.8667 0.5310 14 6 1.3185 -5.7157 -1.2920 15 6 2.0660 -6.1531 -0.0312 16 1 1.6687 -7.0061 0.5189 17 6 3.5672 -6.0218 -0.0311 18 6 4.2025 -5.3641 -1.0682 19 6 5.5782 -5.2373 -1.0675 20 6 6.3231 -5.7804 -0.0308 21 8 7.6769 -5.6616 -0.0304 22 6 8.2672 -4.9649 -1.1296 23 9 7.7750 -3.6560 -1.1707 24 9 9.6569 -4.9352 -0.9707 25 9 7.9478 -5.6209 -2.3232 26 6 5.6837 -6.4448 1.0058 27 6 4.3074 -6.5636 1.0035 28 1 -0.4850 0.8401 0.0040 29 1 0.3534 -2.3906 -0.0118 30 1 0.4293 -6.2808 -1.5716 31 1 1.9123 -5.3327 -2.1219 32 1 3.6226 -4.9457 -1.8774 33 1 6.0736 -4.7197 -1.8756 34 1 6.2614 -6.8681 1.8141 35 1 3.8092 -7.0811 1.8100 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359850203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:08 Heat of formation + Delta-G solvation = -171.587584 kcal Electronic energy + Delta-G solvation = -26282.627328 eV Core-core repulsion = 21832.055561 eV Total energy + Delta-G solvation = -4450.571767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.35903 -48.11604 -47.92085 -40.19159 -39.09443 -37.28059 -35.54058 -33.84909 -31.28997 -30.71942 -29.76399 -26.03806 -25.52745 -23.57498 -22.93597 -22.45019 -20.60532 -19.43912 -19.05564 -19.01937 -18.83198 -17.82309 -16.92465 -16.16229 -15.37071 -15.10007 -14.99386 -14.76372 -14.59885 -14.41913 -14.39033 -14.27951 -14.04160 -14.01490 -13.96709 -13.68100 -13.21386 -13.06850 -12.88057 -12.50984 -12.15500 -11.70045 -11.45465 -11.20614 -11.09919 -10.69841 -10.42857 -10.32070 -10.15044 -10.07232 -9.52651 -8.81637 -8.42080 -7.99304 -7.51468 -6.46737 -3.86416 1.54403 1.62109 1.75242 2.96238 3.12763 3.24035 3.29964 3.50040 3.87523 3.97091 4.11822 4.16565 4.41612 4.72490 4.95409 5.00497 5.09888 5.15748 5.30449 5.38376 5.42349 5.58034 5.66637 5.81639 5.91259 6.04538 6.23262 6.30789 6.42080 6.44514 6.61147 6.72639 7.00398 7.29923 7.50877 8.01677 8.56448 9.13207 9.50645 10.02371 10.70568 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.004476 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.499866 B = 6254.708056 C = 7943.397839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.928 3.072 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.283 1.283 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.553 5.553 10 C 0.459 3.541 11 O -0.576 6.576 12 C -0.158 4.158 13 H 0.114 0.886 14 C -0.158 4.158 15 C -0.093 4.093 16 H 0.114 0.886 17 C -0.045 4.045 18 C 0.004 3.996 19 C -0.194 4.194 20 C 0.092 3.908 21 O -0.315 6.315 22 C 0.603 3.397 23 F -0.161 7.161 24 F -0.139 7.139 25 F -0.169 7.169 26 C -0.137 4.137 27 C -0.083 4.083 28 H 0.272 0.728 29 H 0.393 0.607 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -13.408 -1.892 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.755 3.245 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.209 1.209 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.187 5.187 10 C 0.245 3.755 11 O -0.461 6.461 12 C -0.180 4.180 13 H 0.132 0.868 14 C -0.195 4.195 15 C -0.111 4.111 16 H 0.132 0.868 17 C -0.045 4.045 18 C -0.014 4.014 19 C -0.213 4.213 20 C 0.050 3.950 21 O -0.236 6.236 22 C 0.512 3.488 23 F -0.143 7.143 24 F -0.121 7.121 25 F -0.151 7.151 26 C -0.156 4.156 27 C -0.102 4.102 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.428 -13.245 -1.794 15.801 hybrid contribution -0.194 1.332 -0.140 1.353 sum 8.234 -11.913 -1.934 14.610 Atomic orbital electron populations 1.69616 1.05960 1.28256 1.50131 1.25268 0.95606 0.99765 0.97158 0.85879 0.79287 0.80821 0.78473 1.20352 1.19375 1.20868 1.19719 0.93387 0.82186 1.47520 0.87850 1.41885 1.09261 1.04524 1.63043 1.19018 0.87756 0.83868 0.84868 1.90564 1.13225 1.86183 1.56173 1.22321 1.01008 0.91903 1.02737 0.86809 1.23059 1.02296 1.02454 0.91730 1.20937 0.90442 0.97558 1.02191 0.86793 1.18842 0.92947 0.98018 0.94673 1.20517 0.92334 0.91278 0.97255 1.21233 0.95917 1.04908 0.99233 1.18593 0.77627 1.01090 0.97677 1.86338 1.22735 1.72043 1.42446 1.19366 0.76343 0.76093 0.77031 1.93344 1.87505 1.37606 1.95871 1.93271 1.27155 1.96213 1.95431 1.93276 1.92549 1.81248 1.48008 1.20076 0.94148 1.03506 0.97828 1.20561 0.92084 0.99757 0.97752 0.91798 0.77414 0.88125 0.88228 0.85886 0.85849 0.85405 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 10 C 0.46 10.27 7.43 -10.99 -0.08 10.19 16 11 O -0.58 -14.23 11.30 5.55 0.06 -14.17 16 12 C -0.16 -2.64 6.19 -91.78 -0.57 -3.21 16 13 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 14 C -0.16 -2.17 9.57 -26.76 -0.26 -2.43 16 15 C -0.09 -1.33 6.04 -91.80 -0.55 -1.88 16 16 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.04 -0.73 4.36 -104.60 -0.46 -1.18 16 18 C 0.00 0.08 6.18 -39.60 -0.24 -0.17 16 19 C -0.19 -3.36 8.26 -39.43 -0.33 -3.69 16 20 C 0.09 1.51 6.48 -39.22 -0.25 1.25 16 21 O -0.32 -4.82 10.37 -19.42 -0.20 -5.03 16 22 C 0.60 8.44 3.42 101.05 0.35 8.78 16 23 F -0.16 -2.52 15.56 2.25 0.04 -2.48 16 24 F -0.14 -1.75 17.53 2.25 0.04 -1.71 16 25 F -0.17 -2.26 15.56 2.25 0.04 -2.23 16 26 C -0.14 -2.05 9.99 -39.43 -0.39 -2.45 16 27 C -0.08 -1.23 9.73 -39.60 -0.39 -1.62 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.10 1.45 6.17 -51.93 -0.32 1.13 16 32 H 0.12 2.19 5.79 -52.49 -0.30 1.88 16 33 H 0.12 2.05 5.10 -52.49 -0.27 1.78 16 34 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 313.33 15.07 4.72 4.72 Total: -1.00 -29.59 313.33 -5.92 -35.51 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -2.84 Total: 10.73 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.41 Total: -4.16 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.67 Total: -37.13 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.14 Total: -19.20 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.11 Total: -6.42 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.59 -5.92 -35.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359850203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.076 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds