Wall clock time and date at job start Tue Mar 31 2020 11:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48500 * 109.47088 * 90.00226 * 3 2 1 5 5 H 1.48505 * 109.47152 * 209.99703 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99703 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.07992 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99958 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99768 * 179.97438 * 10 9 7 13 13 H 1.08998 * 115.55180 * 325.66643 * 12 10 9 14 14 C 1.52996 * 117.49613 * 111.37674 * 12 10 9 15 15 C 1.52998 * 117.49474 * 179.97438 * 12 10 9 16 16 H 1.09002 * 117.49609 * 145.02292 * 15 12 10 17 17 C 1.50699 * 117.50216 * 0.02562 * 15 12 10 18 18 C 1.38263 * 119.94431 * 299.72959 * 17 15 12 19 19 C 1.38151 * 120.05436 * 179.72125 * 18 17 15 20 20 C 1.38732 * 119.94189 * 0.54748 * 19 18 17 21 21 O 1.35898 * 120.05529 * 179.74601 * 20 19 18 22 22 C 1.42901 * 116.99861 * 359.97438 * 21 20 19 23 23 F 1.39902 * 109.47141 * 60.00308 * 22 21 20 24 24 F 1.39906 * 109.47190 * 179.97438 * 22 21 20 25 25 F 1.39895 * 109.47491 * 300.00102 * 22 21 20 26 26 C 1.38733 * 119.89122 * 359.72889 * 20 19 18 27 27 C 1.38143 * 119.94300 * 359.97438 * 26 20 19 28 28 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 29 29 H 0.97000 * 119.99715 * 359.97438 * 9 7 2 30 30 H 1.09004 * 117.49857 * 214.97597 * 14 12 10 31 31 H 1.08995 * 117.50401 * 359.97438 * 14 12 10 32 32 H 1.07992 * 119.97328 * 359.97438 * 18 17 15 33 33 H 1.08000 * 120.02458 * 180.27204 * 19 18 17 34 34 H 1.07999 * 120.02732 * 180.02562 * 26 20 19 35 35 H 1.08000 * 119.97142 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4456 2.6527 -0.7001 7 6 2.0090 -1.2033 -0.0057 8 1 3.0889 -1.2032 -0.0061 9 7 1.3234 -2.3906 -0.0118 10 6 1.9973 -3.5578 -0.0178 11 8 3.2103 -3.5577 -0.0183 12 6 1.2438 -4.8629 -0.0240 13 1 0.3057 -4.8667 0.5310 14 6 1.3185 -5.7157 -1.2920 15 6 2.0660 -6.1531 -0.0312 16 1 1.6687 -7.0061 0.5189 17 6 3.5672 -6.0218 -0.0311 18 6 4.2025 -5.3641 -1.0682 19 6 5.5782 -5.2373 -1.0675 20 6 6.3231 -5.7804 -0.0308 21 8 7.6769 -5.6616 -0.0304 22 6 8.2672 -4.9649 -1.1296 23 9 7.7750 -3.6560 -1.1707 24 9 9.6569 -4.9352 -0.9707 25 9 7.9478 -5.6209 -2.3232 26 6 5.6837 -6.4448 1.0058 27 6 4.3074 -6.5636 1.0035 28 1 -0.4850 0.8401 0.0040 29 1 0.3534 -2.3906 -0.0118 30 1 0.4293 -6.2808 -1.5716 31 1 1.9123 -5.3327 -2.1219 32 1 3.6226 -4.9457 -1.8774 33 1 6.0736 -4.7197 -1.8756 34 1 6.2614 -6.8681 1.8141 35 1 3.8092 -7.0811 1.8100 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359850203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:07 Heat of formation + Delta-G solvation = -189.120577 kcal Electronic energy + Delta-G solvation = -26283.387616 eV Core-core repulsion = 21832.055561 eV Total energy + Delta-G solvation = -4451.332055 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.50724 -49.22591 -49.10251 -41.46494 -40.51191 -38.73765 -36.89053 -35.74461 -33.22127 -31.96214 -31.01071 -27.59804 -27.00889 -24.79526 -24.45523 -23.68583 -21.79863 -20.73290 -20.49211 -20.21378 -20.10736 -19.67869 -18.31670 -17.52301 -16.78304 -16.49682 -16.26267 -16.11551 -15.89869 -15.78552 -15.61891 -15.54787 -15.47909 -15.25127 -15.20573 -15.12518 -14.82021 -14.24005 -14.15775 -14.01894 -13.61075 -13.26262 -12.97903 -12.86950 -12.41966 -12.30762 -12.15874 -11.90641 -11.55996 -11.35164 -11.20201 -10.36072 -10.00336 -9.71399 -8.90144 -8.46292 -5.93142 0.29439 0.45575 0.51235 1.34681 1.38907 1.50794 1.79537 1.96764 2.28042 2.63518 2.74269 2.92461 3.11247 3.19065 3.36959 3.73637 3.79383 3.87303 4.04551 4.11453 4.26130 4.35872 4.46516 4.58663 4.65531 4.89981 4.97688 5.10127 5.13278 5.25753 5.38685 5.41758 5.50899 5.77838 6.02087 6.08618 6.62208 7.14910 7.61670 8.17891 8.70969 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.004476 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.499866 B = 6254.708056 C = 7943.397839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.986 3.014 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.326 4.326 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.459 3.541 11 O -0.602 6.602 12 C -0.180 4.180 13 H 0.138 0.862 14 C -0.140 4.140 15 C -0.079 4.079 16 H 0.157 0.843 17 C -0.062 4.062 18 C -0.018 4.018 19 C -0.213 4.213 20 C 0.077 3.923 21 O -0.316 6.316 22 C 0.606 3.394 23 F -0.173 7.173 24 F -0.128 7.128 25 F -0.165 7.165 26 C -0.138 4.138 27 C -0.080 4.080 28 H 0.276 0.724 29 H 0.394 0.606 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.156 0.844 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.086 -15.088 -1.027 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.810 3.190 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.456 4.456 8 H 0.095 0.905 9 N -0.207 5.207 10 C 0.247 3.753 11 O -0.489 6.489 12 C -0.201 4.201 13 H 0.156 0.844 14 C -0.177 4.177 15 C -0.097 4.097 16 H 0.175 0.825 17 C -0.062 4.062 18 C -0.036 4.036 19 C -0.231 4.231 20 C 0.036 3.964 21 O -0.237 6.237 22 C 0.515 3.485 23 F -0.155 7.155 24 F -0.110 7.110 25 F -0.147 7.147 26 C -0.156 4.156 27 C -0.098 4.098 28 H 0.086 0.914 29 H 0.228 0.772 30 H 0.159 0.841 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.173 0.827 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.893 -14.946 -0.935 16.928 hybrid contribution 0.080 1.738 -0.429 1.792 sum 7.973 -13.207 -1.363 15.487 Atomic orbital electron populations 1.69672 1.06715 1.29102 1.50679 1.25939 0.96445 1.02161 0.96616 0.85033 0.77893 0.77486 0.78587 1.19758 1.20087 1.19524 1.19603 0.92516 0.84089 1.49351 0.90512 1.41961 1.09227 1.04663 1.64856 1.20095 0.87868 0.85242 0.82050 1.90564 1.14830 1.87146 1.56319 1.22235 1.02050 0.89532 1.06245 0.84420 1.23202 1.03325 1.00780 0.90436 1.21204 0.89013 0.96980 1.02524 0.82543 1.19201 0.94460 0.97936 0.94615 1.20571 0.92538 0.92489 0.97985 1.21316 0.96253 1.05678 0.99886 1.18825 0.77985 1.01573 0.98028 1.86320 1.22333 1.72107 1.42897 1.19294 0.76619 0.75557 0.76990 1.93320 1.87779 1.38510 1.95930 1.93294 1.26175 1.96130 1.95374 1.93281 1.92589 1.81080 1.47750 1.20533 0.94749 1.02509 0.97812 1.21028 0.92034 0.98852 0.97897 0.91419 0.77230 0.84134 0.89861 0.87314 0.86394 0.82659 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.33 -18.38 9.68 84.04 0.81 -17.56 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -28.81 5.29 -306.99 -1.62 -30.44 16 10 C 0.46 20.73 7.43 87.66 0.65 21.38 16 11 O -0.60 -30.46 11.30 -3.07 -0.03 -30.50 16 12 C -0.18 -5.62 6.19 -11.54 -0.07 -5.70 16 13 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 14 C -0.14 -3.48 9.57 30.58 0.29 -3.19 16 15 C -0.08 -2.01 6.04 -11.56 -0.07 -2.08 16 16 H 0.16 2.67 8.14 -2.39 -0.02 2.65 16 17 C -0.06 -1.91 4.36 -19.85 -0.09 -2.00 16 18 C -0.02 -0.63 6.18 22.25 0.14 -0.49 16 19 C -0.21 -7.53 8.26 22.37 0.18 -7.34 16 20 C 0.08 2.51 6.48 22.51 0.15 2.66 16 21 O -0.32 -9.52 10.37 -92.40 -0.96 -10.48 16 22 C 0.61 16.99 3.42 113.37 0.39 17.38 16 23 F -0.17 -5.56 15.56 44.97 0.70 -4.86 16 24 F -0.13 -3.16 17.53 44.97 0.79 -2.37 16 25 F -0.16 -4.45 15.56 44.97 0.70 -3.75 16 26 C -0.14 -3.84 9.99 22.37 0.22 -3.61 16 27 C -0.08 -2.15 9.73 22.26 0.22 -1.93 16 28 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 29 H 0.39 19.14 7.90 -92.71 -0.73 18.41 16 30 H 0.14 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.08 2.37 6.17 -2.39 -0.01 2.36 16 32 H 0.11 4.05 5.79 -2.91 -0.02 4.04 16 33 H 0.12 4.13 5.10 -2.91 -0.01 4.11 16 34 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -65.94 313.33 5.62 -60.32 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.45 Total: 28.73 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 3.29 Total: -2.66 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.34 Total: -79.96 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -0.99 Total: -40.98 kcal Atomic # 9 Polarization: -13.16 SS G_CDS: 2.19 Total: -10.98 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -65.94 5.62 -60.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359850203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.803 kcal (2) G-P(sol) polarization free energy of solvation -65.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds