Wall clock time and date at job start Tue Mar 31 2020 11:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99854 * 2 1 4 4 H 1.48501 * 109.46924 * 269.99945 * 3 2 1 5 5 H 1.48499 * 109.47062 * 29.99758 * 3 2 1 6 6 H 1.48501 * 109.47252 * 150.00265 * 3 2 1 7 7 C 1.37879 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99923 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99824 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46922 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47301 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54106 * 291.62108 * 11 10 9 13 13 O 1.42097 * 110.54024 * 68.37064 * 11 10 9 14 14 N 1.65601 * 104.45017 * 179.97438 * 11 10 9 15 15 C 1.47158 * 120.97826 * 91.37839 * 14 11 10 16 16 C 1.52870 * 108.60711 * 230.49948 * 15 14 11 17 17 O 1.42963 * 109.29956 * 307.93763 * 16 15 14 18 18 C 1.42961 * 114.16581 * 62.45301 * 17 16 15 19 19 C 1.47142 * 120.98509 * 271.66133 * 14 11 10 20 20 H 1.08993 * 109.68737 * 249.20661 * 19 14 11 21 21 C 1.50701 * 109.68136 * 9.72464 * 19 14 11 22 22 C 1.34517 * 125.78669 * 234.53372 * 21 19 14 23 23 C 1.41379 * 106.84058 * 179.97438 * 22 21 19 24 24 C 1.34510 * 106.84341 * 0.02562 * 23 22 21 25 25 O 1.34302 * 108.41949 * 359.73247 * 24 23 22 26 26 H 0.96998 * 120.00022 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46998 * 299.99609 * 9 7 2 28 28 H 1.08999 * 109.47474 * 60.00124 * 9 7 2 29 29 H 1.09008 * 109.46899 * 299.99740 * 10 9 7 30 30 H 1.08999 * 109.47308 * 59.99577 * 10 9 7 31 31 H 1.09004 * 109.68098 * 350.28546 * 15 14 11 32 32 H 1.09003 * 109.67585 * 110.83441 * 15 14 11 33 33 H 1.09003 * 109.58565 * 187.92583 * 16 15 14 34 34 H 1.09008 * 109.40991 * 67.84687 * 16 15 14 35 35 H 1.08998 * 109.51019 * 177.49678 * 18 17 16 36 36 H 1.09002 * 109.55721 * 57.36831 * 18 17 16 37 37 H 1.08001 * 126.58179 * 0.03656 * 22 21 19 38 38 H 1.08004 * 126.58057 * 180.02562 * 23 22 21 39 39 H 1.07994 * 125.79188 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 16 5.8356 -2.6364 -0.0014 12 8 6.3332 -2.1466 -1.2390 13 8 6.3352 -2.1455 1.2350 14 7 6.2489 -4.2400 -0.0004 15 6 6.4663 -4.9670 -1.2613 16 6 5.6425 -6.2544 -1.2304 17 8 5.9296 -6.9702 -0.0266 18 6 5.5775 -6.2698 1.1689 19 6 6.4035 -4.9817 1.2610 20 1 7.4538 -5.2287 1.4153 21 6 5.9060 -4.1408 2.4084 22 6 6.6054 -3.8246 3.5130 23 6 5.7607 -3.0264 4.3181 24 6 4.5955 -2.9031 3.6577 25 8 4.6911 -3.5755 2.4991 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6807 -0.8906 28 1 3.8753 -0.6795 0.8894 29 1 3.6586 -3.1501 0.8904 30 1 3.6579 -3.1505 -0.8896 31 1 6.1481 -4.3489 -2.1009 32 1 7.5230 -5.2130 -1.3656 33 1 5.8980 -6.8724 -2.0911 34 1 4.5815 -6.0065 -1.2623 35 1 5.7863 -6.8989 2.0342 36 1 4.5164 -6.0212 1.1471 37 1 7.6183 -4.1223 3.7408 38 1 6.0043 -2.5978 5.2791 39 1 3.7313 -2.3524 3.9988 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365346163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:57 Heat of formation + Delta-G solvation = -78.603513 kcal Electronic energy + Delta-G solvation = -26206.039786 eV Core-core repulsion = 22436.800803 eV Total energy + Delta-G solvation = -3769.238983 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.46088 -39.42589 -36.79356 -35.62427 -35.11350 -33.96656 -32.97018 -32.28066 -31.46628 -28.73328 -27.02755 -25.96457 -24.42086 -22.13598 -21.39429 -21.06104 -20.55825 -18.81831 -18.06367 -17.14582 -17.00224 -16.58794 -16.02981 -15.71138 -15.45307 -15.34860 -15.16345 -14.77814 -14.31599 -14.16043 -13.73409 -13.65082 -12.86617 -12.59754 -12.55923 -12.34748 -12.15644 -11.97893 -11.90211 -11.70482 -11.61382 -11.53514 -11.22633 -11.14324 -10.81700 -10.61810 -10.40367 -10.13772 -9.68571 -9.60444 -9.39511 -8.90946 -8.68341 -8.15081 -6.18557 -4.19344 0.60180 1.87598 2.71954 2.97176 3.02732 3.23643 3.31174 3.35514 3.61757 4.17323 4.31360 4.33479 4.40357 4.56866 4.82765 4.87090 4.98809 5.08303 5.13452 5.23832 5.28366 5.35361 5.38854 5.52116 5.54354 5.61919 5.72130 5.85157 5.96981 6.09152 6.21557 6.37489 6.42922 6.73940 6.84943 6.86805 6.93906 7.28669 7.53147 8.35600 8.83136 9.41343 10.93794 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.005767 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.088261 B = 4853.778692 C = 5498.646752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.515 4.515 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.583 4.583 11 S 2.582 3.418 12 O -0.967 6.967 13 O -0.942 6.942 14 N -1.008 6.008 15 C 0.087 3.913 16 C 0.043 3.957 17 O -0.374 6.374 18 C 0.052 3.948 19 C 0.218 3.782 20 H 0.110 0.890 21 C -0.046 4.046 22 C -0.158 4.158 23 C -0.215 4.215 24 C -0.008 4.008 25 O -0.177 6.177 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.030 0.970 29 H 0.139 0.861 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.727 -13.022 3.843 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.693 3.307 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.554 4.554 8 H 0.096 0.904 9 C -0.040 4.040 10 C -0.716 4.716 11 S 2.682 3.318 12 O -0.958 6.958 13 O -0.932 6.932 14 N -0.845 5.845 15 C -0.038 4.038 16 C -0.036 4.036 17 O -0.292 6.292 18 C -0.026 4.026 19 C 0.112 3.888 20 H 0.128 0.872 21 C -0.096 4.096 22 C -0.179 4.179 23 C -0.234 4.234 24 C -0.075 4.075 25 O -0.074 6.074 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 13.112 -12.406 3.590 18.404 hybrid contribution -0.240 1.064 0.129 1.099 sum 12.872 -11.342 3.718 17.554 Atomic orbital electron populations 1.69879 1.06155 1.27203 1.50106 1.24968 0.94786 0.99037 0.94225 0.86966 0.80698 0.83854 0.79180 1.19686 1.20717 1.18700 1.20829 0.87737 0.94834 1.52049 0.90421 1.19346 0.99843 0.87355 0.97487 1.30473 1.20802 1.09190 1.11148 1.05999 0.79465 0.72136 0.74198 1.93528 1.79239 1.77358 1.45648 1.93597 1.78678 1.76950 1.44019 1.58320 1.86004 1.29710 1.10451 1.22025 1.01644 0.94337 0.85773 1.22991 0.99262 0.93269 0.88029 1.87957 1.85033 1.42629 1.13618 1.23064 0.98721 0.92329 0.88508 1.19899 1.00525 0.89812 0.78611 0.87226 1.21779 0.85922 1.02834 0.99081 1.21245 1.00180 1.01471 0.94964 1.21659 0.94281 1.04936 1.02502 1.24034 1.01010 0.98434 0.84041 1.83979 1.32511 1.53404 1.37551 0.92397 0.95824 0.95137 0.84337 0.86251 0.87919 0.90223 0.87375 0.92052 0.87226 0.91574 0.83936 0.83714 0.77983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.31 9.66 -34.44 -0.33 -14.64 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.00 -0.02 4.05 -27.88 -0.11 -0.14 16 10 C -0.58 -11.23 5.73 37.16 0.21 -11.01 16 11 S 2.58 46.69 4.76 -107.50 -0.51 46.18 16 12 O -0.97 -19.70 16.76 -57.54 -0.96 -20.67 16 13 O -0.94 -18.64 13.68 -66.23 -0.91 -19.55 16 14 N -1.01 -13.97 3.28 -107.49 -0.35 -14.32 16 15 C 0.09 0.98 6.48 -3.75 -0.02 0.95 16 16 C 0.04 0.41 6.97 37.09 0.26 0.67 16 17 O -0.37 -4.10 10.74 -35.23 -0.38 -4.48 16 18 C 0.05 0.55 6.27 37.31 0.23 0.79 16 19 C 0.22 2.66 3.52 -68.58 -0.24 2.42 16 20 H 0.11 1.15 8.11 -51.93 -0.42 0.73 16 21 C -0.05 -0.65 3.37 -35.62 -0.12 -0.77 16 22 C -0.16 -2.15 10.31 -39.70 -0.41 -2.56 16 23 C -0.21 -2.92 10.91 -39.71 -0.43 -3.35 16 24 C -0.01 -0.11 11.89 29.41 0.35 0.24 16 25 O -0.18 -2.81 6.11 -15.93 -0.10 -2.90 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 28 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 29 H 0.14 2.56 5.33 -51.92 -0.28 2.28 16 30 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 31 H 0.10 1.14 7.18 -51.93 -0.37 0.77 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 37 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.15 1.61 8.06 -52.48 -0.42 1.18 16 39 H 0.20 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -34.86 326.84 -8.12 -42.99 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.23 Total: 2.54 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -0.72 Total: -25.43 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.42 Total: -40.37 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -2.35 Total: -47.60 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 46.69 SS G_CDS: -0.51 Total: 46.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.86 -8.12 -42.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365346163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.617 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds