Wall clock time and date at job start Tue Mar 31 2020 11:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99854 * 2 1 4 4 H 1.48501 * 109.46924 * 269.99945 * 3 2 1 5 5 H 1.48499 * 109.47062 * 29.99758 * 3 2 1 6 6 H 1.48501 * 109.47252 * 150.00265 * 3 2 1 7 7 C 1.37879 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99923 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99824 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46922 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47301 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54106 * 291.62108 * 11 10 9 13 13 O 1.42097 * 110.54024 * 68.37064 * 11 10 9 14 14 N 1.65601 * 104.45017 * 179.97438 * 11 10 9 15 15 C 1.47158 * 120.97826 * 91.37839 * 14 11 10 16 16 C 1.52870 * 108.60711 * 230.49948 * 15 14 11 17 17 O 1.42963 * 109.29956 * 307.93763 * 16 15 14 18 18 C 1.42961 * 114.16581 * 62.45301 * 17 16 15 19 19 C 1.47142 * 120.98509 * 271.66133 * 14 11 10 20 20 H 1.08993 * 109.68737 * 249.20661 * 19 14 11 21 21 C 1.50701 * 109.68136 * 9.72464 * 19 14 11 22 22 C 1.34517 * 125.78669 * 234.53372 * 21 19 14 23 23 C 1.41379 * 106.84058 * 179.97438 * 22 21 19 24 24 C 1.34510 * 106.84341 * 0.02562 * 23 22 21 25 25 O 1.34302 * 108.41949 * 359.73247 * 24 23 22 26 26 H 0.96998 * 120.00022 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46998 * 299.99609 * 9 7 2 28 28 H 1.08999 * 109.47474 * 60.00124 * 9 7 2 29 29 H 1.09008 * 109.46899 * 299.99740 * 10 9 7 30 30 H 1.08999 * 109.47308 * 59.99577 * 10 9 7 31 31 H 1.09004 * 109.68098 * 350.28546 * 15 14 11 32 32 H 1.09003 * 109.67585 * 110.83441 * 15 14 11 33 33 H 1.09003 * 109.58565 * 187.92583 * 16 15 14 34 34 H 1.09008 * 109.40991 * 67.84687 * 16 15 14 35 35 H 1.08998 * 109.51019 * 177.49678 * 18 17 16 36 36 H 1.09002 * 109.55721 * 57.36831 * 18 17 16 37 37 H 1.08001 * 126.58179 * 0.03656 * 22 21 19 38 38 H 1.08004 * 126.58057 * 180.02562 * 23 22 21 39 39 H 1.07994 * 125.79188 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 16 5.8356 -2.6364 -0.0014 12 8 6.3332 -2.1466 -1.2390 13 8 6.3352 -2.1455 1.2350 14 7 6.2489 -4.2400 -0.0004 15 6 6.4663 -4.9670 -1.2613 16 6 5.6425 -6.2544 -1.2304 17 8 5.9296 -6.9702 -0.0266 18 6 5.5775 -6.2698 1.1689 19 6 6.4035 -4.9817 1.2610 20 1 7.4538 -5.2287 1.4153 21 6 5.9060 -4.1408 2.4084 22 6 6.6054 -3.8246 3.5130 23 6 5.7607 -3.0264 4.3181 24 6 4.5955 -2.9031 3.6577 25 8 4.6911 -3.5755 2.4991 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6807 -0.8906 28 1 3.8753 -0.6795 0.8894 29 1 3.6586 -3.1501 0.8904 30 1 3.6579 -3.1505 -0.8896 31 1 6.1481 -4.3489 -2.1009 32 1 7.5230 -5.2130 -1.3656 33 1 5.8980 -6.8724 -2.0911 34 1 4.5815 -6.0065 -1.2623 35 1 5.7863 -6.8989 2.0342 36 1 4.5164 -6.0212 1.1471 37 1 7.6183 -4.1223 3.7408 38 1 6.0043 -2.5978 5.2791 39 1 3.7313 -2.3524 3.9988 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365346163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:56 Heat of formation + Delta-G solvation = -103.938143 kcal Electronic energy + Delta-G solvation = -26207.138378 eV Core-core repulsion = 22436.800803 eV Total energy + Delta-G solvation = -3770.337575 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.52498 -40.30524 -38.28216 -37.09543 -36.13835 -35.90888 -34.03778 -33.48151 -33.19761 -29.71034 -28.05939 -27.81665 -25.31626 -23.48095 -22.73609 -22.20744 -21.70940 -20.05018 -19.56671 -18.89654 -18.05163 -17.77582 -17.14473 -16.99467 -16.57382 -16.51154 -16.22052 -16.07400 -16.00596 -15.27463 -15.20873 -14.84605 -14.68680 -13.88303 -13.70556 -13.51004 -13.38830 -13.26215 -13.23944 -13.09457 -13.04261 -12.95822 -12.91629 -12.37632 -12.22353 -12.04101 -11.82965 -11.65013 -11.52289 -11.08137 -10.86908 -10.66529 -9.97270 -9.21239 -8.38566 -6.43982 -0.82011 0.79904 1.28288 1.30351 1.40276 1.51753 1.89683 2.02205 2.26483 2.73160 2.82591 2.94883 3.07464 3.34047 3.63104 3.81387 3.93526 4.03344 4.09582 4.13317 4.25375 4.29851 4.35814 4.52362 4.56204 4.59171 4.70794 4.90715 4.92653 4.98098 5.02116 5.05032 5.10747 5.36430 5.37420 5.44484 5.74438 6.06402 6.15587 6.22681 6.61085 7.19998 8.77008 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.005767 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.088261 B = 4853.778692 C = 5498.646752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.018 3.982 3 Si 0.921 3.079 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.522 4.522 8 H 0.047 0.953 9 C -0.005 4.005 10 C -0.591 4.591 11 S 2.608 3.392 12 O -0.991 6.991 13 O -0.959 6.959 14 N -1.002 6.002 15 C 0.078 3.922 16 C 0.042 3.958 17 O -0.378 6.378 18 C 0.055 3.945 19 C 0.215 3.785 20 H 0.134 0.866 21 C -0.060 4.060 22 C -0.166 4.166 23 C -0.215 4.215 24 C -0.038 4.038 25 O -0.197 6.197 26 H 0.270 0.730 27 H 0.023 0.977 28 H 0.029 0.971 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.139 0.861 34 H 0.057 0.943 35 H 0.134 0.866 36 H 0.055 0.945 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.004 -13.829 3.962 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.181 4.181 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.561 4.561 8 H 0.066 0.934 9 C -0.044 4.044 10 C -0.722 4.722 11 S 2.706 3.294 12 O -0.981 6.981 13 O -0.949 6.949 14 N -0.842 5.842 15 C -0.046 4.046 16 C -0.036 4.036 17 O -0.296 6.296 18 C -0.023 4.023 19 C 0.109 3.891 20 H 0.152 0.848 21 C -0.110 4.110 22 C -0.185 4.185 23 C -0.234 4.234 24 C -0.105 4.105 25 O -0.096 6.096 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.161 0.839 30 H 0.148 0.852 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.157 0.843 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.073 0.927 37 H 0.186 0.814 38 H 0.185 0.815 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 15.374 -13.213 3.706 20.608 hybrid contribution -0.942 1.175 0.108 1.510 sum 14.432 -12.037 3.814 19.177 Atomic orbital electron populations 1.70000 1.07768 1.28365 1.51582 1.25805 0.95578 1.02724 0.93983 0.86082 0.79896 0.79727 0.79873 1.18654 1.19572 1.17619 1.21084 0.89948 0.93755 1.51323 0.93438 1.19244 0.97347 0.90559 0.97216 1.30485 1.23366 1.06338 1.11994 1.04976 0.78078 0.73116 0.73203 1.93494 1.79101 1.78778 1.46724 1.93570 1.78383 1.78335 1.44652 1.58006 1.85268 1.28588 1.12342 1.22352 1.03287 0.94608 0.84352 1.23142 0.98799 0.92999 0.88671 1.87964 1.84960 1.42772 1.13898 1.23108 0.97811 0.91967 0.89426 1.20259 1.02090 0.89674 0.77029 0.84826 1.22251 0.85555 1.03072 1.00079 1.21662 1.01227 1.01013 0.94645 1.22031 0.93773 1.04368 1.03225 1.24440 1.02222 0.99444 0.84347 1.83934 1.33513 1.53959 1.38153 0.92071 0.95831 0.95285 0.83946 0.85216 0.88078 0.88188 0.84343 0.92513 0.84843 0.92670 0.81444 0.81546 0.77179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.39 13.96 21.45 0.30 -57.10 16 2 C 0.02 1.04 5.47 84.65 0.46 1.50 16 3 Si 0.92 43.96 27.47 68.60 1.88 45.85 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.25 -11.53 6.54 99.48 0.65 -10.88 16 7 C -0.52 -29.71 9.66 25.60 0.25 -29.47 16 8 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 9 C 0.00 -0.22 4.05 29.85 0.12 -0.10 16 10 C -0.59 -22.85 5.73 71.98 0.41 -22.44 16 11 S 2.61 91.68 4.76 -56.49 -0.27 91.41 16 12 O -0.99 -39.27 16.76 -127.65 -2.14 -41.41 16 13 O -0.96 -36.91 13.68 -119.34 -1.63 -38.54 16 14 N -1.00 -25.84 3.28 -494.00 -1.62 -27.45 16 15 C 0.08 1.55 6.48 86.21 0.56 2.11 16 16 C 0.04 0.69 6.97 71.94 0.50 1.20 16 17 O -0.38 -7.18 10.74 -148.98 -1.60 -8.78 16 18 C 0.06 1.04 6.27 72.08 0.45 1.49 16 19 C 0.21 4.74 3.52 44.22 0.16 4.89 16 20 H 0.13 2.34 8.11 -2.39 -0.02 2.32 16 21 C -0.06 -1.60 3.37 24.83 0.08 -1.52 16 22 C -0.17 -4.15 10.31 22.19 0.23 -3.92 16 23 C -0.22 -5.55 10.91 22.19 0.24 -5.31 16 24 C -0.04 -1.10 11.89 66.97 0.80 -0.30 16 25 O -0.20 -6.20 6.11 18.20 0.11 -6.09 16 26 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.02 1.12 7.57 -2.39 -0.02 1.11 16 28 H 0.03 1.39 7.20 -2.39 -0.02 1.38 16 29 H 0.14 5.37 5.33 -2.39 -0.01 5.36 16 30 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 31 H 0.10 2.06 7.18 -2.38 -0.02 2.05 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.14 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 37 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.21 5.37 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -74.97 326.84 0.30 -74.68 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 1.00 Total: 19.29 kcal Atomic # 6 Polarization: -56.12 SS G_CDS: 4.26 Total: -51.86 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -1.32 Total: -84.55 kcal Atomic # 8 Polarization: -89.56 SS G_CDS: -5.26 Total: -94.82 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.85 kcal Atomic # 16 Polarization: 91.68 SS G_CDS: -0.27 Total: 91.41 kcal Total: -74.97 0.30 -74.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365346163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.262 kcal (2) G-P(sol) polarization free energy of solvation -74.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds