Wall clock time and date at job start Tue Mar 31 2020 11:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00191 * 2 1 4 4 H 1.48498 * 109.47042 * 239.99673 * 3 2 1 5 5 H 1.48507 * 109.47138 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47687 * 119.99293 * 3 2 1 7 7 C 1.37876 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99581 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47546 * 179.97438 * 9 7 2 11 11 S 1.81393 * 109.47522 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54456 * 68.37501 * 11 10 9 13 13 O 1.42096 * 110.54155 * 291.62519 * 11 10 9 14 14 N 1.65601 * 104.45290 * 180.02562 * 11 10 9 15 15 C 1.47154 * 120.97990 * 270.02667 * 14 11 10 16 16 C 1.53295 * 108.38485 * 129.44212 * 15 14 11 17 17 O 1.42952 * 109.22457 * 52.29870 * 16 15 14 18 18 C 1.42975 * 114.20169 * 297.43705 * 17 16 15 19 19 C 1.47146 * 120.98160 * 89.99457 * 14 11 10 20 20 H 1.09007 * 109.67965 * 110.80345 * 19 14 11 21 21 C 1.50702 * 109.68367 * 350.28575 * 19 14 11 22 22 C 1.34512 * 125.78762 * 140.51318 * 21 19 14 23 23 C 1.41385 * 106.83926 * 179.76997 * 22 21 19 24 24 C 1.34515 * 106.83992 * 0.23220 * 23 22 21 25 25 O 1.34305 * 125.78789 * 320.67531 * 21 19 14 26 26 H 0.97000 * 119.99721 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46776 * 60.00340 * 9 7 2 28 28 H 1.08997 * 109.47420 * 300.00077 * 9 7 2 29 29 H 1.09007 * 109.47075 * 59.99915 * 10 9 7 30 30 H 1.09006 * 109.47107 * 300.00374 * 10 9 7 31 31 H 1.09007 * 109.67677 * 249.15890 * 15 14 11 32 32 H 1.08992 * 109.68327 * 9.71215 * 15 14 11 33 33 H 1.08999 * 109.50956 * 172.22490 * 16 15 14 34 34 H 1.08996 * 109.51163 * 292.36956 * 16 15 14 35 35 H 1.09005 * 109.48248 * 302.61744 * 18 17 16 36 36 H 1.09007 * 109.55044 * 182.46611 * 18 17 16 37 37 H 1.08002 * 126.58498 * 0.04167 * 22 21 19 38 38 H 1.08002 * 126.58069 * 180.26215 * 23 22 21 39 39 H 1.08000 * 125.79162 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3383 -5.2330 -0.0002 12 8 0.6647 -5.4194 -1.2374 13 8 0.6639 -5.4200 1.2364 14 7 2.5204 -6.3927 0.0006 15 6 3.0624 -6.9227 -1.2607 16 6 4.5923 -6.8499 -1.1979 17 8 5.0447 -7.4810 0.0024 18 6 4.5903 -6.8512 1.2028 19 6 3.0602 -6.9232 1.2624 20 1 2.7462 -7.9593 1.3893 21 6 2.5577 -6.0955 2.4172 22 6 2.1734 -6.5693 3.6161 23 6 1.7839 -5.4533 4.3918 24 6 1.9487 -4.3648 3.6188 25 8 2.4148 -4.7601 2.4229 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8898 28 1 0.6240 -2.5567 0.8902 29 1 2.8719 -3.6044 0.8906 30 1 2.8719 -3.6043 -0.8895 31 1 2.7491 -7.9590 -1.3882 32 1 2.7004 -6.3238 -2.0963 33 1 5.0169 -7.3626 -2.0611 34 1 4.9077 -5.8066 -1.2018 35 1 4.9062 -5.8079 1.2081 36 1 5.0129 -7.3646 2.0666 37 1 2.1679 -7.6033 3.9279 38 1 1.4237 -5.4712 5.4098 39 1 1.7411 -3.3458 3.9103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365346169.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:59 Heat of formation + Delta-G solvation = -80.566007 kcal Electronic energy + Delta-G solvation = -26165.600469 eV Core-core repulsion = 22396.276386 eV Total energy + Delta-G solvation = -3769.324084 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.38631 -39.38242 -36.65096 -35.49314 -35.04552 -33.91218 -32.97263 -32.16958 -31.12982 -28.65893 -26.95391 -25.60132 -24.39479 -22.19928 -21.44607 -21.14991 -20.55555 -18.74212 -17.89727 -16.92695 -16.88591 -16.39100 -15.92616 -15.72644 -15.42594 -15.27127 -15.10090 -14.65859 -14.58513 -14.02652 -13.62531 -13.45458 -12.60532 -12.53700 -12.44513 -12.29076 -12.10571 -11.87600 -11.72501 -11.57660 -11.55166 -11.33779 -11.05564 -10.96259 -10.74261 -10.61259 -10.35879 -10.30847 -9.73763 -9.58987 -9.28351 -8.83495 -8.51733 -8.06390 -6.13990 -4.19451 0.73772 1.99155 2.83371 2.99814 3.12425 3.24770 3.30048 3.31645 3.64997 4.28582 4.37572 4.38197 4.46725 4.64233 4.88138 4.91689 5.03714 5.12645 5.20978 5.28744 5.33506 5.38998 5.42554 5.54675 5.64714 5.75241 5.76203 5.93359 6.03092 6.13375 6.33896 6.45470 6.62656 6.81578 6.87783 7.30274 7.36226 7.37446 7.79149 8.16863 8.83796 9.45082 10.96927 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.005399 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.724821 B = 5185.250896 C = 5801.287595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.035 3.965 10 C -0.585 4.585 11 S 2.588 3.412 12 O -0.969 6.969 13 O -0.944 6.944 14 N -1.010 6.010 15 C 0.088 3.912 16 C 0.043 3.957 17 O -0.375 6.375 18 C 0.054 3.946 19 C 0.216 3.784 20 H 0.108 0.892 21 C -0.034 4.034 22 C -0.177 4.177 23 C -0.222 4.222 24 C 0.004 3.996 25 O -0.174 6.174 26 H 0.265 0.735 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.131 0.869 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.320 -14.561 3.733 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.718 4.718 11 S 2.688 3.312 12 O -0.959 6.959 13 O -0.935 6.935 14 N -0.847 5.847 15 C -0.037 4.037 16 C -0.035 4.035 17 O -0.293 6.293 18 C -0.024 4.024 19 C 0.110 3.890 20 H 0.126 0.874 21 C -0.084 4.084 22 C -0.197 4.197 23 C -0.241 4.241 24 C -0.064 4.064 25 O -0.071 6.071 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 8.387 -14.666 3.457 17.245 hybrid contribution 0.569 1.447 0.175 1.564 sum 8.956 -13.219 3.632 16.375 Atomic orbital electron populations 1.69946 1.06099 1.27267 1.49591 1.25054 0.94941 0.99440 0.94968 0.86558 0.79523 0.82636 0.78727 1.20089 1.21063 1.20084 1.20953 0.92980 0.89712 1.52075 0.92166 1.18886 0.92539 0.90453 0.98527 1.30586 1.13725 1.17497 1.10020 1.05855 0.74833 0.76518 0.73976 1.93521 1.71204 1.85425 1.45770 1.93558 1.71023 1.84743 1.44143 1.58366 1.59069 1.57042 1.10240 1.22089 0.94441 1.01393 0.85816 1.23065 0.93523 0.98863 0.88057 1.87950 1.72691 1.55047 1.13577 1.23063 0.91644 0.99377 0.88357 1.19925 0.94422 0.96027 0.78670 0.87392 1.21751 1.06954 0.82271 0.97447 1.21220 1.04990 0.99827 0.93699 1.21628 1.08815 0.92103 1.01599 1.23957 1.00116 1.00307 0.81979 1.84005 1.65782 1.22057 1.35285 0.92492 0.95306 0.94985 0.85054 0.86949 0.90264 0.87981 0.87438 0.92092 0.91749 0.87221 0.83943 0.83799 0.78153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.04 0.90 4.98 -27.89 -0.14 0.76 16 10 C -0.58 -11.65 5.57 37.16 0.21 -11.44 16 11 S 2.59 49.28 4.74 -107.50 -0.51 48.77 16 12 O -0.97 -20.97 16.82 -57.54 -0.97 -21.94 16 13 O -0.94 -19.80 13.22 -67.32 -0.89 -20.69 16 14 N -1.01 -14.65 3.27 -107.25 -0.35 -15.00 16 15 C 0.09 1.03 6.50 -3.53 -0.02 1.01 16 16 C 0.04 0.42 6.99 37.31 0.26 0.69 16 17 O -0.37 -4.16 10.74 -35.23 -0.38 -4.54 16 18 C 0.05 0.58 6.27 37.31 0.23 0.81 16 19 C 0.22 2.75 3.50 -68.58 -0.24 2.51 16 20 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 21 C -0.03 -0.50 3.83 -35.62 -0.14 -0.64 16 22 C -0.18 -2.44 10.80 -39.70 -0.43 -2.87 16 23 C -0.22 -3.12 10.91 -39.70 -0.43 -3.55 16 24 C 0.00 0.06 11.74 29.42 0.35 0.41 16 25 O -0.17 -2.94 4.79 -18.96 -0.09 -3.03 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.13 2.46 5.69 -51.92 -0.30 2.17 16 30 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 31 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.10 1.19 7.23 -51.93 -0.38 0.82 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.20 2.73 8.06 -52.49 -0.42 2.30 16 LS Contribution 329.77 15.07 4.97 4.97 Total: -1.00 -35.02 329.77 -8.55 -43.57 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.28 Total: 2.72 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -0.76 Total: -25.27 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.39 Total: -40.55 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -2.33 Total: -50.20 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 49.28 SS G_CDS: -0.51 Total: 48.77 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.02 -8.55 -43.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365346169.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.992 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds