Wall clock time and date at job start Tue Mar 31 2020 11:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00423 * 2 1 4 4 H 1.48502 * 109.47088 * 240.00063 * 3 2 1 5 5 H 1.48503 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47476 * 120.00049 * 3 2 1 7 7 C 1.37883 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00414 * 181.09550 * 7 2 1 9 9 C 1.50703 * 119.99721 * 1.09120 * 7 2 1 10 10 C 1.53000 * 115.55165 * 325.09054 * 9 7 2 11 11 N 1.46503 * 109.47221 * 305.52332 * 10 9 7 12 12 C 1.34767 * 119.99908 * 184.70597 * 11 10 9 13 13 O 1.21589 * 120.00493 * 5.44888 * 12 11 10 14 14 C 1.47592 * 120.00146 * 185.43931 * 12 11 10 15 15 C 1.39774 * 120.10738 * 355.14895 * 14 12 11 16 16 C 1.37967 * 119.96297 * 180.02562 * 15 14 12 17 17 F 1.35102 * 119.89809 * 180.25448 * 16 15 14 18 18 C 1.38829 * 120.19925 * 359.97438 * 16 15 14 19 19 F 1.35095 * 119.89006 * 179.97438 * 18 16 15 20 20 C 1.38833 * 120.22552 * 0.02562 * 18 16 15 21 21 O 1.36027 * 119.98750 * 179.97438 * 20 18 16 22 22 C 1.38656 * 120.03120 * 0.02562 * 20 18 16 23 23 F 1.35095 * 120.09860 * 179.97438 * 22 20 18 24 24 C 1.53003 * 117.49697 * 110.76339 * 9 7 2 25 25 C 1.53000 * 117.49723 * 179.41906 * 9 7 2 26 26 H 0.97003 * 119.99400 * 5.00730 * 1 2 3 27 27 H 1.09003 * 109.46968 * 185.52463 * 10 9 7 28 28 H 1.09000 * 109.46626 * 65.52426 * 10 9 7 29 29 H 0.97001 * 119.99769 * 4.71198 * 11 10 9 30 30 H 1.08001 * 120.01935 * 0.04633 * 15 14 12 31 31 H 0.96698 * 113.99505 * 90.00535 * 21 20 18 32 32 H 1.08999 * 117.49735 * 215.00347 * 24 9 7 33 33 H 1.09000 * 117.49822 * 0.02562 * 24 9 7 34 34 H 1.09008 * 117.49775 * 359.97438 * 25 9 7 35 35 H 1.08997 * 117.49804 * 144.97354 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0843 -1.1943 0.0184 9 6 1.2511 -2.4991 -0.0237 10 6 -0.0720 -2.5116 0.7444 11 7 0.1604 -2.0786 2.1245 12 6 -0.8490 -2.1019 3.0171 13 8 -1.9253 -2.5742 2.7057 14 6 -0.6482 -1.5542 4.3729 15 6 0.6149 -1.1037 4.7670 16 6 0.7995 -0.5928 6.0353 17 9 2.0197 -0.1530 6.4131 18 6 -0.2663 -0.5240 6.9223 19 9 -0.0784 -0.0231 8.1628 20 6 -1.5243 -0.9692 6.5392 21 8 -2.5650 -0.8999 7.4124 22 6 -1.7202 -1.4853 5.2673 23 9 -2.9436 -1.9194 4.8933 24 6 1.3355 -3.3399 -1.2992 25 6 2.0733 -3.7893 -0.0356 26 1 -0.4849 0.8369 -0.0733 27 1 -0.4824 -3.5214 0.7447 28 1 -0.7771 -1.8329 0.2645 29 1 1.0408 -1.7750 2.3958 30 1 1.4459 -1.1553 4.0791 31 1 -3.0615 -0.0713 7.3675 32 1 0.4484 -3.9019 -1.5912 33 1 1.9363 -2.9494 -2.1206 34 1 3.1592 -3.6943 -0.0264 35 1 1.6718 -4.6469 0.5041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404168537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:49 Heat of formation + Delta-G solvation = -170.340586 kcal Electronic energy + Delta-G solvation = -26376.401297 eV Core-core repulsion = 21925.883604 eV Total energy + Delta-G solvation = -4450.517693 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.79401 -50.19708 -49.85249 -41.18979 -40.02303 -38.51696 -37.77463 -34.94827 -34.12184 -31.89753 -31.01907 -28.00185 -27.31242 -25.25808 -24.26916 -22.95239 -21.80581 -21.16811 -20.15709 -19.45215 -19.34084 -18.78435 -18.14675 -17.74264 -17.56568 -16.99860 -16.86236 -16.69047 -16.33135 -16.20627 -15.89372 -15.79178 -15.74111 -15.41434 -15.00280 -14.77388 -14.29947 -14.04477 -13.68557 -13.40241 -13.26076 -12.89107 -12.77566 -12.58636 -12.29025 -12.27972 -12.02209 -11.55227 -11.06813 -10.85148 -10.66634 -10.32752 -10.15031 -9.99993 -9.69569 -7.94456 -6.18701 -0.96044 -0.60430 1.30077 1.46113 1.51253 1.55741 1.88641 2.18485 2.34720 2.44406 2.59231 2.77821 3.01231 3.05649 3.24670 3.42311 3.67943 3.98518 4.11987 4.25390 4.30037 4.39419 4.55182 4.58405 4.77055 4.81939 4.99415 5.12994 5.16453 5.31089 5.54449 5.62226 5.74115 5.98736 6.35632 6.38950 6.68771 6.88751 7.30546 7.46686 8.93039 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.004759 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.767117 B = 5881.759146 C = 6756.008806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.039 3.961 3 Si 0.943 3.057 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.007 3.993 10 C 0.173 3.827 11 N -0.664 5.664 12 C 0.545 3.455 13 O -0.579 6.579 14 C -0.133 4.133 15 C -0.061 4.061 16 C 0.079 3.921 17 F -0.115 7.115 18 C 0.098 3.902 19 F -0.107 7.107 20 C 0.077 3.923 21 O -0.473 6.473 22 C 0.140 3.860 23 F -0.110 7.110 24 C -0.199 4.199 25 C -0.186 4.186 26 H 0.259 0.741 27 H 0.024 0.976 28 H 0.085 0.915 29 H 0.407 0.593 30 H 0.178 0.822 31 H 0.422 0.578 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 0.885 13.169 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.187 1.187 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.006 3.994 10 C 0.050 3.950 11 N -0.311 5.311 12 C 0.330 3.670 13 O -0.462 6.462 14 C -0.138 4.138 15 C -0.080 4.080 16 C 0.059 3.941 17 F -0.093 7.093 18 C 0.076 3.924 19 F -0.086 7.086 20 C 0.029 3.971 21 O -0.287 6.287 22 C 0.118 3.882 23 F -0.088 7.088 24 C -0.238 4.238 25 C -0.224 4.224 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.244 0.756 30 H 0.196 0.804 31 H 0.283 0.717 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.070 0.182 13.190 13.191 hybrid contribution 0.454 1.538 -0.276 1.627 sum 0.384 1.721 12.914 13.034 Atomic orbital electron populations 1.70002 1.06721 1.27015 1.49150 1.25528 0.95300 1.01372 0.94035 0.85849 0.78434 0.79748 0.79044 1.20570 1.21967 1.18674 1.20682 0.92537 0.89255 1.51501 0.92081 1.19280 0.93550 0.90537 0.95997 1.20888 0.97972 0.95996 0.80143 1.45514 1.12286 1.62927 1.10392 1.17970 0.84470 0.79926 0.84586 1.90777 1.26841 1.48451 1.80123 1.19844 0.93608 1.05338 0.95006 1.21251 0.97254 0.94864 0.94679 1.17082 0.80627 1.03206 0.93204 1.91599 1.39440 1.86970 1.91295 1.17703 0.92750 1.00314 0.81625 1.91577 1.95448 1.84295 1.37241 1.17535 0.88188 1.03251 0.88113 1.84899 1.41953 1.45317 1.56486 1.17844 0.80869 0.98062 0.91415 1.91598 1.39603 1.86214 1.91360 1.22961 1.01924 1.06199 0.92687 1.22964 0.98361 0.99164 1.01876 0.93139 0.95733 0.89715 0.75626 0.80425 0.71658 0.90681 0.90422 0.89602 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.91 10.22 21.45 0.22 -44.69 16 2 C 0.04 1.86 5.28 84.66 0.45 2.31 16 3 Si 0.94 38.30 29.54 68.60 2.03 40.33 16 4 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.50 -23.37 8.31 25.60 0.21 -23.16 16 8 H 0.06 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.01 0.31 2.06 -52.93 -0.11 0.20 16 10 C 0.17 7.79 4.63 86.38 0.40 8.19 16 11 N -0.66 -26.40 5.12 -466.21 -2.39 -28.79 16 12 C 0.54 21.60 7.75 86.71 0.67 22.27 16 13 O -0.58 -27.30 15.33 -4.00 -0.06 -27.36 16 14 C -0.13 -4.12 5.88 -20.06 -0.12 -4.24 16 15 C -0.06 -1.52 9.51 22.58 0.21 -1.30 16 16 C 0.08 1.81 7.29 22.35 0.16 1.98 16 17 F -0.11 -2.65 17.17 44.97 0.77 -1.88 16 18 C 0.10 2.17 7.32 22.55 0.16 2.33 16 19 F -0.11 -2.35 17.01 44.97 0.76 -1.58 16 20 C 0.08 1.78 6.71 22.51 0.15 1.94 16 21 O -0.47 -9.17 13.22 -93.86 -1.24 -10.41 16 22 C 0.14 4.08 7.29 22.74 0.17 4.25 16 23 F -0.11 -3.76 15.39 44.97 0.69 -3.07 16 24 C -0.20 -8.06 9.96 30.62 0.30 -7.76 16 25 C -0.19 -6.96 9.92 30.62 0.30 -6.66 16 26 H 0.26 12.92 8.32 -92.71 -0.77 12.14 16 27 H 0.02 1.10 8.05 -2.39 -0.02 1.08 16 28 H 0.09 4.42 5.90 -2.39 -0.01 4.41 16 29 H 0.41 14.69 5.98 -92.71 -0.55 14.14 16 30 H 0.18 4.01 6.41 -2.91 -0.02 3.99 16 31 H 0.42 3.85 9.06 -74.06 -0.67 3.18 16 32 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 35 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -58.88 320.33 3.73 -55.15 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.03 Total: 21.96 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 2.97 Total: 0.35 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -2.17 Total: -73.48 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.30 Total: -37.78 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 2.23 Total: -6.53 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -58.88 3.73 -55.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404168537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.193 kcal (2) G-P(sol) polarization free energy of solvation -58.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds