Wall clock time and date at job start Tue Mar 31 2020 10:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35954 * 116.99749 * 2 1 4 4 C 1.38888 * 119.94314 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.27406 * 180.02562 * 4 3 2 6 6 Cl 1.73599 * 119.92537 * 180.02562 * 5 4 3 7 7 C 1.38438 * 120.15304 * 0.02562 * 5 4 3 8 8 F 1.35102 * 120.05608 * 179.97438 * 7 5 4 9 9 C 1.39765 * 119.88430 * 359.97438 * 7 5 4 10 10 C 1.47706 * 120.13697 * 179.97438 * 9 7 5 11 11 O 1.21569 * 119.99750 * 311.05890 * 10 9 7 12 12 N 1.34773 * 119.99694 * 131.06281 * 10 9 7 13 13 C 1.46500 * 120.00615 * 4.45007 * 12 10 9 14 14 C 1.46505 * 119.99600 * 184.45572 * 12 10 9 15 15 H 1.09001 * 109.47060 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47064 * 239.99339 * 14 12 10 17 17 C 1.50700 * 109.46873 * 119.99839 * 14 12 10 18 18 H 1.07996 * 120.00682 * 359.97438 * 17 14 12 19 19 C 1.37886 * 119.99647 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99850 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99806 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47261 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47117 * 119.99667 * 21 19 17 24 24 H 1.48498 * 109.46846 * 239.99974 * 21 19 17 25 25 C 1.38328 * 119.93932 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47300 * 300.00044 * 1 2 3 28 28 H 1.09001 * 109.47283 * 60.00046 * 1 2 3 29 29 H 1.08003 * 119.86104 * 0.02562 * 4 3 2 30 30 H 1.08996 * 109.46945 * 92.91480 * 13 12 10 31 31 H 1.09001 * 109.47691 * 212.92279 * 13 12 10 32 32 H 1.09002 * 109.46835 * 332.91948 * 13 12 10 33 33 H 1.08999 * 109.47069 * 179.97438 * 16 14 12 34 34 H 1.08999 * 109.47323 * 300.00637 * 16 14 12 35 35 H 1.09009 * 109.46782 * 60.00065 * 16 14 12 36 36 H 0.97001 * 119.99418 * 179.97438 * 20 19 17 37 37 H 1.07998 * 120.07992 * 0.25711 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2886 2.3754 -0.0005 5 6 1.9090 3.6108 -0.0011 6 17 0.9531 5.0599 -0.0011 7 6 3.2908 3.6950 -0.0016 8 9 3.8951 4.9033 -0.0027 9 6 4.0596 2.5278 -0.0011 10 6 5.5343 2.6111 -0.0022 11 8 6.1015 3.3351 -0.7972 12 7 6.2509 1.8844 0.8780 13 6 5.5747 0.9392 1.7699 14 6 7.7062 2.0399 0.9430 15 1 8.0255 2.7809 0.2101 16 6 8.3765 0.6990 0.6373 17 6 8.1015 2.4957 2.3239 18 1 7.3445 2.6542 3.0777 19 6 9.4297 2.7115 2.6248 20 7 10.3516 2.5190 1.7068 21 14 9.9197 3.2771 4.3364 22 1 8.7042 3.4195 5.1776 23 1 10.8302 2.2756 4.9470 24 1 10.6139 4.5867 4.2450 25 6 3.4277 1.2824 0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2102 2.3152 -0.0005 30 1 5.5634 -0.0492 1.3106 31 1 6.1065 0.8922 2.7203 32 1 4.5510 1.2713 1.9425 33 1 9.4593 0.8148 0.6852 34 1 8.0572 -0.0423 1.3698 35 1 8.0905 0.3692 -0.3616 36 1 11.2859 2.6711 1.9184 37 1 4.0162 0.3769 -0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412168968.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:15 Heat of formation + Delta-G solvation = -86.176734 kcal Electronic energy + Delta-G solvation = -24298.151139 eV Core-core repulsion = 20403.079745 eV Total energy + Delta-G solvation = -3895.071394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.78692 -40.57587 -39.17401 -37.53385 -36.44763 -35.42250 -33.02924 -31.48878 -30.17453 -29.16544 -27.54067 -26.31624 -25.24954 -24.05614 -22.90164 -21.21207 -19.30827 -17.86579 -17.54455 -17.31213 -16.64682 -16.37630 -16.02871 -15.56820 -15.37812 -15.26700 -14.60923 -14.34065 -14.25682 -13.60797 -13.29800 -13.11771 -13.02003 -12.55555 -12.46625 -12.31344 -12.21590 -11.72043 -11.61433 -11.34635 -11.28347 -11.07692 -10.89868 -10.81989 -10.69916 -10.27230 -10.19069 -9.36521 -9.21567 -9.07576 -8.45332 -8.36791 -7.69374 -6.09462 -4.17602 0.54334 0.83062 1.70091 2.78922 2.94817 3.25894 3.32978 3.35514 3.42578 3.78090 4.00722 4.37383 4.44649 4.51669 4.70073 4.80312 4.81351 5.04797 5.10963 5.22435 5.28985 5.52950 5.66554 5.74417 5.82952 5.96431 6.18613 6.33649 6.72641 6.79603 6.92398 7.01755 7.32275 7.46717 7.68063 7.97429 8.14113 8.39849 8.73136 8.91431 9.48756 10.96037 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.004011 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.737400 B = 6978.768028 C = 7768.564448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.124 3.876 4 C -0.164 4.164 5 C -0.042 4.042 6 Cl -0.044 7.044 7 C 0.121 3.879 8 F -0.109 7.109 9 C -0.096 4.096 10 C 0.547 3.453 11 O -0.529 6.529 12 N -0.578 5.578 13 C 0.075 3.925 14 C 0.257 3.743 15 H 0.066 0.934 16 C -0.146 4.146 17 C -0.528 4.528 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.089 4.089 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.149 0.851 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.031 0.969 35 H 0.012 0.988 36 H 0.263 0.737 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.252 -5.132 -1.957 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.219 6.219 3 C 0.078 3.922 4 C -0.183 4.183 5 C -0.070 4.070 6 Cl -0.015 7.015 7 C 0.099 3.901 8 F -0.087 7.087 9 C -0.101 4.101 10 C 0.332 3.668 11 O -0.407 6.407 12 N -0.308 5.308 13 C -0.068 4.068 14 C 0.158 3.842 15 H 0.083 0.917 16 C -0.204 4.204 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.524 5.524 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.109 4.109 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.167 0.833 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.678 -4.765 -2.380 21.353 hybrid contribution -0.050 0.735 1.009 1.249 sum -20.729 -4.030 -1.372 21.161 Atomic orbital electron populations 1.23152 0.77977 1.04440 1.01611 1.86149 1.21649 1.25468 1.88665 1.18589 0.91659 0.84178 0.97770 1.21016 1.01015 0.89617 1.06686 1.20503 0.89702 0.89358 1.07431 1.98389 1.70755 1.35505 1.96836 1.17176 0.88239 0.81216 1.03428 1.91611 1.83202 1.40727 1.93192 1.20105 0.95827 0.91560 1.02608 1.17778 0.84777 0.81688 0.82563 1.90802 1.70879 1.39947 1.39066 1.48208 1.10172 1.38344 1.34093 1.21858 0.96992 0.92045 0.95941 1.19054 0.71625 0.95207 0.98323 0.91667 1.22082 1.04818 0.97236 0.96309 1.21332 0.92555 1.46163 0.96566 0.92062 1.24886 0.96287 0.95062 0.97448 1.69890 1.00995 1.48439 1.33096 0.86422 0.78543 0.78432 0.83910 1.19774 1.20896 1.20863 1.20648 0.91520 0.97720 1.00986 0.87788 0.92312 0.92365 0.83308 0.93243 0.89807 0.92342 0.88669 0.94998 0.96843 0.92665 0.82677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.96 10.49 -19.60 -0.21 -3.17 16 3 C 0.12 1.40 6.68 -39.31 -0.26 1.14 16 4 C -0.16 -1.73 8.81 -39.34 -0.35 -2.07 16 5 C -0.04 -0.55 6.32 -39.51 -0.25 -0.80 16 6 Cl -0.04 -0.52 28.60 -51.86 -1.48 -2.01 16 7 C 0.12 2.00 7.23 -38.94 -0.28 1.72 16 8 F -0.11 -2.09 16.06 2.25 0.04 -2.06 16 9 C -0.10 -1.64 4.90 -104.93 -0.51 -2.15 16 10 C 0.55 11.83 7.01 -12.39 -0.09 11.74 16 11 O -0.53 -13.58 15.98 5.31 0.08 -13.49 16 12 N -0.58 -12.41 2.75 -176.43 -0.49 -12.90 16 13 C 0.08 1.26 8.11 59.85 0.49 1.74 16 14 C 0.26 6.56 2.63 -69.08 -0.18 6.37 16 15 H 0.07 1.93 6.91 -51.93 -0.36 1.57 16 16 C -0.15 -3.44 8.97 37.16 0.33 -3.11 16 17 C -0.53 -14.17 8.01 -34.44 -0.28 -14.45 16 18 H 0.06 1.62 7.29 -52.49 -0.38 1.24 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 20 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 21 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 C -0.09 -1.20 7.54 -39.02 -0.29 -1.50 16 26 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 29 H 0.15 1.10 6.27 -52.48 -0.33 0.77 16 30 H 0.05 0.71 7.55 -51.93 -0.39 0.32 16 31 H 0.08 1.47 6.98 -51.93 -0.36 1.11 16 32 H 0.06 0.84 5.68 -51.93 -0.29 0.55 16 33 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 34 H 0.03 0.68 7.67 -51.93 -0.40 0.29 16 35 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.16 1.92 6.56 -52.49 -0.34 1.58 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -31.74 328.27 -6.23 -37.97 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.95 Total: -2.40 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.78 Total: 1.44 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.14 Total: -37.18 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.12 Total: -16.66 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.74 -6.23 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412168968.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.210 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds