Wall clock time and date at job start Tue Mar 31 2020 10:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47162 * 2 1 4 4 C 1.46494 * 120.00095 * 274.97127 * 3 2 1 5 5 C 1.50705 * 109.46738 * 269.99476 * 4 3 2 6 6 H 1.07993 * 120.00081 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99733 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00373 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00001 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47005 * 90.00199 * 9 7 5 11 11 H 1.48497 * 109.47081 * 210.00430 * 9 7 5 12 12 H 1.48497 * 109.46938 * 329.99994 * 9 7 5 13 13 C 1.34780 * 119.99385 * 94.96808 * 3 2 1 14 14 O 1.21570 * 119.99568 * 185.55902 * 13 3 2 15 15 C 1.47698 * 120.00593 * 5.55776 * 13 3 2 16 16 C 1.39650 * 120.13219 * 55.02083 * 15 13 3 17 17 C 1.38337 * 119.83973 * 180.27496 * 16 15 13 18 18 O 1.35953 * 119.94241 * 179.73460 * 17 16 15 19 19 C 1.42890 * 117.00281 * 179.72457 * 18 17 16 20 20 C 1.38887 * 120.11918 * 359.45569 * 17 16 15 21 21 C 1.38250 * 120.26995 * 0.27901 * 20 17 16 22 22 Cl 1.73605 * 119.91917 * 179.97438 * 21 20 17 23 23 C 1.38432 * 120.15768 * 359.97438 * 21 20 17 24 24 F 1.35100 * 120.05567 * 180.02562 * 23 21 20 25 25 H 1.09004 * 109.47195 * 299.99938 * 1 2 3 26 26 H 1.09008 * 109.47228 * 59.99568 * 1 2 3 27 27 H 1.08996 * 109.47451 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47039 * 240.00633 * 2 1 3 29 29 H 1.08993 * 109.47086 * 120.00025 * 2 1 3 30 30 H 1.08999 * 109.47314 * 29.99622 * 4 3 2 31 31 H 1.08998 * 109.47258 * 149.99908 * 4 3 2 32 32 H 0.97005 * 120.00255 * 180.02562 * 8 7 5 33 33 H 1.08000 * 120.07830 * 0.03473 * 16 15 13 34 34 H 1.09007 * 109.47429 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.47467 * 300.00047 * 19 18 17 36 36 H 1.09005 * 109.47210 * 60.00185 * 19 18 17 37 37 H 1.08003 * 119.86475 * 180.25128 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1588 2.1085 -1.2639 5 6 3.5417 1.8861 -1.8203 6 1 4.2452 1.2648 -1.2861 7 6 3.9082 2.4749 -3.0119 8 7 3.0513 3.2311 -3.6627 9 14 5.6220 2.1987 -3.7020 10 1 5.6144 1.0025 -4.5818 11 1 6.0369 3.3885 -4.4876 12 1 6.5769 1.9856 -2.5849 13 6 2.3382 1.9828 1.1629 14 8 2.6464 3.1587 1.1743 15 6 2.3143 1.2135 2.4235 16 6 3.0556 0.0357 2.5402 17 6 3.0244 -0.6831 3.7217 18 8 3.7410 -1.8328 3.8357 19 6 3.6680 -2.5215 5.0855 20 6 2.2668 -0.2294 4.7937 21 6 1.5355 0.9389 4.6853 22 17 0.5911 1.4973 6.0307 23 6 1.5544 1.6643 3.5064 24 9 0.8394 2.8059 3.4029 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.4179 1.7457 -1.9762 31 1 2.0043 3.1733 -1.0895 32 1 3.3091 3.6451 -4.5012 33 1 3.6488 -0.3151 1.7086 34 1 4.2845 -3.4194 5.0422 35 1 4.0305 -1.8704 5.8810 36 1 2.6336 -2.8000 5.2871 37 1 2.2485 -0.7917 5.7156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412172339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:24 Heat of formation + Delta-G solvation = -111.564827 kcal Electronic energy + Delta-G solvation = -24335.229160 eV Core-core repulsion = 20439.056855 eV Total energy + Delta-G solvation = -3896.172305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.12064 -41.68075 -40.55970 -38.52153 -37.46432 -37.12847 -34.92437 -32.66640 -31.66129 -31.15282 -29.19033 -28.13386 -25.80725 -24.89984 -23.91801 -23.44698 -20.87737 -19.10847 -18.70581 -18.60094 -18.35380 -17.87905 -17.38383 -16.97847 -16.55082 -16.35148 -16.23633 -15.85026 -15.49676 -14.85420 -14.70669 -14.59935 -14.32532 -14.12112 -14.05623 -13.67821 -13.37787 -13.23355 -13.15649 -12.93276 -12.70212 -12.53962 -12.30879 -12.21850 -12.18285 -12.00032 -11.74010 -11.72020 -10.97096 -10.64465 -10.24036 -9.56567 -9.37608 -8.23065 -6.38302 -0.53273 -0.25164 0.68406 1.37890 1.41382 1.49219 1.53506 2.02277 2.05247 2.30104 2.43235 2.84969 3.07057 3.23974 3.59815 3.63291 3.91627 4.07962 4.17371 4.34231 4.35964 4.48181 4.53094 4.56702 4.74828 4.75887 4.83762 4.86334 4.89857 4.99418 5.10688 5.19018 5.31006 5.52185 5.77578 6.02385 6.16875 6.53772 6.70031 7.12295 7.33969 8.84812 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.004150 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.530984 B = 6745.445628 C = 7526.191782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.089 3.911 3 N -0.586 5.586 4 C 0.261 3.739 5 C -0.545 4.545 6 H 0.059 0.941 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.545 3.455 14 O -0.581 6.581 15 C -0.108 4.108 16 C -0.094 4.094 17 C 0.148 3.852 18 O -0.314 6.314 19 C 0.007 3.993 20 C -0.140 4.140 21 C -0.033 4.033 22 Cl -0.029 7.029 23 C 0.087 3.913 24 F -0.135 7.135 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.029 0.971 31 H -0.002 1.002 32 H 0.268 0.732 33 H 0.156 0.844 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 -16.692 20.521 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.033 4.033 3 N -0.315 5.315 4 C 0.140 3.860 5 C -0.584 4.584 6 H 0.077 0.923 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.332 3.668 14 O -0.462 6.462 15 C -0.112 4.112 16 C -0.114 4.114 17 C 0.101 3.899 18 O -0.227 6.227 19 C -0.086 4.086 20 C -0.159 4.159 21 C -0.061 4.061 22 Cl 0.000 7.000 23 C 0.066 3.934 24 F -0.113 7.113 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.047 0.953 31 H 0.016 0.984 32 H 0.077 0.923 33 H 0.173 0.827 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.698 -16.008 20.308 25.999 hybrid contribution 0.305 1.010 -0.583 1.205 sum -2.394 -14.998 19.724 24.894 Atomic orbital electron populations 1.22122 0.94771 1.03664 1.01277 1.22026 0.95444 0.81216 1.04579 1.48195 1.61823 1.15360 1.06156 1.18835 0.96458 0.91116 0.79602 1.21682 0.99106 1.31053 1.06516 0.92285 1.25874 1.01878 0.94270 0.96986 1.70062 1.37222 1.32697 1.16788 0.85378 0.78754 0.78161 0.78306 1.18591 1.20810 1.19553 1.18410 0.77825 0.86311 0.84218 1.90762 1.50380 1.17881 1.87135 1.19586 1.01062 0.97235 0.93350 1.20458 1.00138 0.92057 0.98712 1.18442 0.91736 0.87444 0.92263 1.86184 1.64266 1.32910 1.39313 1.23602 1.04614 0.97590 0.82829 1.21405 0.97758 0.95611 1.01159 1.20527 1.00199 0.96925 0.88422 1.98398 1.70320 1.89119 1.42191 1.17399 0.96873 0.85233 0.93873 1.91524 1.75755 1.47590 1.96476 0.93581 0.93740 0.88102 0.89648 0.88023 0.95276 0.98380 0.92344 0.82677 0.85752 0.90880 0.90360 0.79146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.52 10.24 71.98 0.74 -3.78 16 2 C 0.09 2.90 5.95 86.38 0.51 3.42 16 3 N -0.59 -26.27 2.46 -829.75 -2.04 -28.31 16 4 C 0.26 14.43 5.23 85.64 0.45 14.88 16 5 C -0.55 -31.52 9.39 25.60 0.24 -31.28 16 6 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 9 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 10 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.55 25.17 6.85 86.74 0.59 25.76 16 14 O -0.58 -32.95 16.43 -3.94 -0.06 -33.02 16 15 C -0.11 -3.74 4.91 -20.07 -0.10 -3.83 16 16 C -0.09 -2.54 7.41 22.63 0.17 -2.37 16 17 C 0.15 2.93 6.68 22.45 0.15 3.08 16 18 O -0.31 -5.05 10.49 -93.02 -0.98 -6.03 16 19 C 0.01 0.05 9.81 113.37 1.11 1.16 16 20 C -0.14 -2.37 8.81 22.43 0.20 -2.18 16 21 C -0.03 -0.77 6.32 22.32 0.14 -0.63 16 22 Cl -0.03 -0.61 28.61 -2.72 -0.08 -0.69 16 23 C 0.09 2.82 7.24 22.69 0.16 2.99 16 24 F -0.13 -5.13 16.23 44.97 0.73 -4.40 16 25 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.09 2.78 8.11 -2.39 -0.02 2.76 16 29 H 0.10 2.73 4.42 -2.39 -0.01 2.72 16 30 H 0.03 1.62 8.07 -2.39 -0.02 1.61 16 31 H 0.00 -0.12 7.35 -2.39 -0.02 -0.14 16 32 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 33 H 0.16 4.16 7.58 -2.91 -0.02 4.14 16 34 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 36 H 0.08 0.25 7.66 -2.38 -0.02 0.23 16 37 H 0.19 1.64 6.27 -2.91 -0.02 1.62 16 Total: -1.00 -77.73 338.44 5.82 -71.91 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 1.11 Total: 1.80 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 4.83 Total: 8.20 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -1.75 Total: -84.58 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.04 Total: -39.04 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.73 Total: -4.40 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -77.73 5.82 -71.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412172339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.659 kcal (2) G-P(sol) polarization free energy of solvation -77.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds