Wall clock time and date at job start Tue Mar 31 2020 10:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47106 * 305.36570 * 3 2 1 5 5 C 1.50702 * 109.46889 * 185.37103 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.79662 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.79566 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46500 * 109.47312 * 65.37188 * 3 2 1 14 14 C 1.34778 * 119.99915 * 274.99725 * 13 3 2 15 15 O 1.21575 * 119.99725 * 0.02562 * 14 13 3 16 16 C 1.47702 * 119.99978 * 180.02562 * 14 13 3 17 17 C 1.39641 * 120.13605 * 0.02562 * 16 14 13 18 18 C 1.38339 * 119.84336 * 179.97438 * 17 16 14 19 19 O 1.35952 * 119.93903 * 180.02562 * 18 17 16 20 20 C 1.42899 * 116.99731 * 179.97438 * 19 18 17 21 21 C 1.38882 * 120.11709 * 359.97438 * 18 17 16 22 22 C 1.38245 * 120.27365 * 0.02562 * 21 18 17 23 23 Cl 1.73603 * 119.92406 * 179.97438 * 22 21 18 24 24 C 1.38431 * 120.15549 * 359.74034 * 22 21 18 25 25 F 1.35097 * 120.06166 * 180.26127 * 24 22 21 26 26 H 1.09002 * 109.46784 * 60.00411 * 1 2 3 27 27 H 1.08999 * 109.47328 * 300.00262 * 1 2 3 28 28 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46784 * 119.99589 * 2 1 3 30 30 H 1.08999 * 109.47328 * 239.99738 * 2 1 3 31 31 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00012 * 95.00177 * 13 3 2 33 33 H 1.08002 * 120.07824 * 359.95537 * 17 16 14 34 34 H 1.09006 * 109.47387 * 179.97438 * 20 19 18 35 35 H 1.08999 * 109.47104 * 299.99860 * 20 19 18 36 36 H 1.09009 * 109.47452 * 59.99690 * 20 19 18 37 37 H 1.08001 * 119.86430 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5411 1.4446 -0.1330 6 1 4.1542 1.8171 0.6744 7 6 4.1317 0.9711 -1.2853 8 7 3.3878 0.6475 -2.3204 9 14 5.9887 0.7892 -1.3763 10 1 6.3863 -0.5217 -0.8032 11 1 6.4243 0.8624 -2.7941 12 1 6.6315 1.8825 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6615 1.3793 15 8 -0.3388 2.6309 0.4492 16 6 0.0606 3.3196 2.6450 17 6 0.9571 3.3569 3.7149 18 6 0.5925 3.9753 4.8974 19 8 1.4640 4.0132 5.9402 20 6 1.0226 4.6682 7.1310 21 6 -0.6619 4.5586 5.0208 22 6 -1.5533 4.5245 3.9646 23 17 -3.1191 5.2558 4.1290 24 6 -1.1983 3.9129 2.7746 25 9 -2.0689 3.8853 1.7419 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.8033 0.3140 -3.1310 32 1 2.2841 2.1189 1.9977 33 1 1.9328 2.9036 3.6196 34 1 1.8113 4.6265 7.8823 35 1 0.7879 5.7089 6.9076 36 1 0.1317 4.1686 7.5118 37 1 -0.9425 5.0400 5.9460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412253534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:21 Heat of formation + Delta-G solvation = -120.210441 kcal Electronic energy + Delta-G solvation = -24069.277449 eV Core-core repulsion = 20172.730242 eV Total energy + Delta-G solvation = -3896.547207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.98427 -41.55349 -40.54015 -38.52660 -37.50236 -36.89874 -34.41950 -33.32212 -31.98194 -31.04023 -28.99967 -28.10965 -25.57548 -24.77401 -23.71019 -22.19172 -21.27214 -20.00849 -18.59253 -18.50131 -18.27146 -17.30496 -17.20748 -17.05100 -16.53805 -16.26912 -16.14173 -16.06845 -15.55561 -14.93404 -14.60714 -14.41163 -14.11754 -14.10634 -13.87127 -13.47831 -13.28841 -13.24105 -12.92249 -12.89937 -12.61788 -12.33102 -12.18615 -12.18413 -12.08865 -11.74668 -11.61011 -11.08950 -10.88602 -10.53116 -10.30544 -9.71615 -9.34259 -8.17389 -6.31948 -0.61643 -0.21893 0.71361 1.47212 1.47945 1.57518 1.67021 2.07629 2.30360 2.45578 2.50740 2.90582 3.14673 3.44350 3.61821 3.71575 4.05675 4.16711 4.35397 4.46384 4.46894 4.52786 4.55798 4.70880 4.76900 4.78426 4.85193 5.04409 5.15825 5.23493 5.40466 5.47803 5.60057 5.74407 5.87554 6.06635 6.17339 6.74943 6.84842 7.30421 7.45697 8.91026 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.003841 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.033377 B = 7288.832547 C = 8521.178648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C 0.276 3.724 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.263 1.263 13 N -0.690 5.690 14 C 0.540 3.460 15 O -0.567 6.567 16 C -0.125 4.125 17 C -0.085 4.085 18 C 0.138 3.862 19 O -0.314 6.314 20 C 0.008 3.992 21 C -0.136 4.136 22 C -0.044 4.044 23 Cl -0.033 7.033 24 C 0.100 3.900 25 F -0.126 7.126 26 H 0.025 0.975 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.265 0.735 32 H 0.405 0.595 33 H 0.164 0.836 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 8.340 22.455 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.173 3.827 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.094 0.906 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.187 1.187 13 N -0.340 5.340 14 C 0.327 3.673 15 O -0.448 6.448 16 C -0.129 4.129 17 C -0.105 4.105 18 C 0.091 3.909 19 O -0.227 6.227 20 C -0.086 4.086 21 C -0.156 4.156 22 C -0.072 4.072 23 Cl -0.004 7.004 24 C 0.079 3.921 25 F -0.104 7.104 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.182 0.818 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.030 8.226 21.590 23.878 hybrid contribution 0.427 -0.020 -0.633 0.763 sum -5.603 8.206 20.957 23.194 Atomic orbital electron populations 1.21697 0.96984 0.99391 1.00274 1.21713 0.93773 0.98884 1.00814 1.18478 0.94140 0.89195 0.80860 0.97723 1.21526 0.91036 1.43458 1.02720 0.90647 1.25765 1.03218 0.94633 0.94621 1.70122 1.37497 1.43905 1.03912 0.85407 0.79135 0.79075 0.77028 1.19486 1.21559 1.18721 1.46159 1.14546 1.55260 1.18014 1.18247 0.82822 0.79271 0.87002 1.90813 1.51872 1.60618 1.41505 1.19792 0.94162 1.03227 0.95736 1.20682 1.00483 0.99821 0.89506 1.18527 0.88788 0.95127 0.88458 1.86179 1.39890 1.74344 1.22278 1.23579 1.03653 0.97585 0.83779 1.21425 0.91726 1.02526 0.99894 1.20584 0.90767 1.02026 0.93823 1.98396 1.23662 1.80699 1.97601 1.17544 0.88022 1.01462 0.85101 1.91563 1.67579 1.94290 1.56964 0.95556 0.93963 0.93201 0.93047 0.92386 0.92615 0.75877 0.81815 0.85744 0.90825 0.90739 0.79456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.52 71.98 0.61 -5.16 16 2 C -0.11 -5.49 5.49 30.59 0.17 -5.32 16 3 C 0.28 14.14 2.11 44.25 0.09 14.23 16 4 H 0.00 0.30 7.55 -2.39 -0.02 0.28 16 5 C -0.55 -28.65 8.67 25.60 0.22 -28.43 16 6 H 0.08 3.63 7.73 -2.91 -0.02 3.61 16 7 C 0.02 0.97 5.19 84.65 0.44 1.41 16 8 N -0.92 -52.81 12.00 21.45 0.26 -52.55 16 9 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 13 N -0.69 -28.69 4.98 -449.10 -2.23 -30.92 16 14 C 0.54 22.63 6.35 86.74 0.55 23.18 16 15 O -0.57 -28.61 12.47 -3.95 -0.05 -28.66 16 16 C -0.12 -4.04 5.88 -20.07 -0.12 -4.15 16 17 C -0.09 -2.08 9.47 22.63 0.21 -1.87 16 18 C 0.14 2.62 6.68 22.45 0.15 2.77 16 19 O -0.31 -4.88 10.49 -93.01 -0.98 -5.86 16 20 C 0.01 0.05 9.81 113.37 1.11 1.16 16 21 C -0.14 -2.31 8.81 22.43 0.20 -2.11 16 22 C -0.04 -1.04 6.32 22.32 0.14 -0.89 16 23 Cl -0.03 -0.69 28.61 -2.72 -0.08 -0.77 16 24 C 0.10 3.18 7.26 22.69 0.16 3.35 16 25 F -0.13 -4.80 15.10 44.97 0.68 -4.12 16 26 H 0.03 1.30 7.87 -2.39 -0.02 1.28 16 27 H 0.04 1.89 5.64 -2.39 -0.01 1.88 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.06 3.13 6.64 -2.39 -0.02 3.12 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.40 13.87 6.56 -92.71 -0.61 13.26 16 33 H 0.16 3.52 6.40 -2.91 -0.02 3.50 16 34 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 36 H 0.07 0.28 7.66 -2.38 -0.02 0.27 16 37 H 0.19 1.69 6.27 -2.91 -0.02 1.67 16 Total: -1.00 -70.03 327.77 4.10 -65.93 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.52 Total: 15.17 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 3.95 Total: -1.84 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -1.98 Total: -83.48 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.03 Total: -34.51 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.68 Total: -4.12 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -70.03 4.10 -65.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412253534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.278 kcal (2) G-P(sol) polarization free energy of solvation -70.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds