Wall clock time and date at job start Tue Mar 31 2020 10:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46924 * 2 1 4 4 H 1.08999 * 109.47259 * 55.00738 * 3 2 1 5 5 C 1.50709 * 109.47079 * 175.00118 * 3 2 1 6 6 H 1.07995 * 119.99707 * 120.00020 * 5 3 2 7 7 C 1.37877 * 119.99867 * 300.00531 * 5 3 2 8 8 N 1.31518 * 119.99898 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99943 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47452 * 59.99506 * 9 7 5 11 11 H 1.48503 * 109.47280 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46831 * 299.99694 * 9 7 5 13 13 N 1.46502 * 109.47523 * 294.99873 * 3 2 1 14 14 C 1.34779 * 119.99495 * 84.99916 * 13 3 2 15 15 O 1.21566 * 120.00035 * 0.02562 * 14 13 3 16 16 C 1.47704 * 119.99602 * 180.02562 * 14 13 3 17 17 C 1.39638 * 120.13706 * 359.97438 * 16 14 13 18 18 C 1.38336 * 119.84549 * 180.02562 * 17 16 14 19 19 O 1.35954 * 119.94489 * 180.02562 * 18 17 16 20 20 C 1.42897 * 117.00220 * 180.02562 * 19 18 17 21 21 C 1.38887 * 120.11656 * 359.97438 * 18 17 16 22 22 C 1.38248 * 120.27159 * 0.02562 * 21 18 17 23 23 Cl 1.73607 * 119.92256 * 179.97438 * 22 21 18 24 24 C 1.38433 * 120.15721 * 0.02562 * 22 21 18 25 25 F 1.35093 * 120.06161 * 180.27224 * 24 22 21 26 26 H 1.09003 * 109.47041 * 299.99656 * 1 2 3 27 27 H 1.09001 * 109.47195 * 59.99854 * 1 2 3 28 28 H 1.08998 * 109.47295 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47041 * 240.00344 * 2 1 3 30 30 H 1.09001 * 109.47195 * 120.00146 * 2 1 3 31 31 H 0.97001 * 119.99788 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00336 * 265.00691 * 13 3 2 33 33 H 1.08002 * 120.07746 * 359.97438 * 17 16 14 34 34 H 1.09001 * 109.47364 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.46830 * 299.99728 * 20 19 18 36 36 H 1.09000 * 109.47384 * 59.99714 * 20 19 18 37 37 H 1.08003 * 119.86590 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0049 0.8812 1.3817 10 1 6.4995 2.2814 1.3821 11 1 6.3979 0.2176 2.6508 12 1 6.5975 0.1473 0.2347 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3411 2.6325 -0.4318 16 6 0.0441 3.3243 -2.6291 17 6 0.9337 3.3630 -3.7048 18 6 0.5615 3.9832 -4.8840 19 8 1.4258 4.0216 -5.9327 20 6 0.9769 4.6784 -7.1197 21 6 -0.6940 4.5657 -4.9989 22 6 -1.5786 4.5302 -3.9370 23 17 -3.1454 5.2619 -4.0902 24 6 -1.2174 3.9136 -2.7514 25 9 -2.0853 3.8752 -1.7168 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8293 -0.0613 2.9498 32 1 2.2719 2.1232 -1.9978 33 1 1.9104 2.9106 -3.6160 34 1 1.7603 4.6369 -7.8765 35 1 0.0831 4.1797 -7.4950 36 1 0.7445 5.7190 -6.8935 37 1 -0.9803 5.0492 -5.9213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412253536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:23 Heat of formation + Delta-G solvation = -118.603427 kcal Electronic energy + Delta-G solvation = -24077.623396 eV Core-core repulsion = 20181.145875 eV Total energy + Delta-G solvation = -3896.477521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.98740 -41.55581 -40.54299 -38.52856 -37.50573 -36.91386 -34.43586 -33.26689 -31.96918 -31.04237 -29.00022 -28.11014 -25.57771 -24.77699 -23.70722 -22.16624 -21.25836 -20.00677 -18.59524 -18.50617 -18.27012 -17.31483 -17.20102 -17.05074 -16.54061 -16.27179 -16.15673 -16.05904 -15.55624 -14.93095 -14.60541 -14.40812 -14.11945 -14.10067 -13.85703 -13.50481 -13.28275 -13.15773 -12.92852 -12.89319 -12.63964 -12.33019 -12.18704 -12.17361 -12.07452 -11.74127 -11.58089 -11.07043 -10.90106 -10.51848 -10.30719 -9.70724 -9.34458 -8.14549 -6.32304 -0.61874 -0.22118 0.71132 1.47462 1.49288 1.56917 1.66819 2.07456 2.30175 2.45248 2.51053 2.90340 3.15217 3.44209 3.61558 3.71386 4.05497 4.16476 4.35202 4.46751 4.48810 4.55614 4.55917 4.73553 4.77259 4.78225 4.85062 5.04915 5.15949 5.25330 5.42261 5.50803 5.59694 5.77838 5.89247 6.15570 6.17171 6.73397 6.84843 7.30167 7.45816 8.90796 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.003837 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.474873 B = 7295.004025 C = 8522.513576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.691 5.691 14 C 0.540 3.460 15 O -0.567 6.567 16 C -0.125 4.125 17 C -0.086 4.086 18 C 0.138 3.862 19 O -0.314 6.314 20 C 0.008 3.992 21 C -0.136 4.136 22 C -0.044 4.044 23 Cl -0.033 7.033 24 C 0.100 3.900 25 F -0.126 7.126 26 H 0.025 0.975 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.265 0.735 32 H 0.405 0.595 33 H 0.164 0.836 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 9.054 -21.939 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.588 4.588 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.187 1.187 13 N -0.340 5.340 14 C 0.327 3.673 15 O -0.448 6.448 16 C -0.129 4.129 17 C -0.105 4.105 18 C 0.091 3.909 19 O -0.227 6.227 20 C -0.086 4.086 21 C -0.156 4.156 22 C -0.072 4.072 23 Cl -0.003 7.003 24 C 0.079 3.921 25 F -0.104 7.104 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.182 0.818 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.081 8.907 -21.080 23.679 hybrid contribution 0.420 0.041 0.595 0.729 sum -5.662 8.948 -20.485 23.060 Atomic orbital electron populations 1.21692 0.97224 0.99216 1.00097 1.21794 0.93485 0.99007 1.01629 1.18470 0.93980 0.89235 0.80818 0.98096 1.21524 0.91067 1.39232 1.06942 0.90724 1.25758 1.03326 0.94281 0.94932 1.70046 1.37187 1.38185 1.09840 0.85417 0.79027 0.78442 0.77569 1.19692 1.21343 1.18738 1.46171 1.14635 1.55158 1.18035 1.18244 0.82787 0.79274 0.87032 1.90807 1.52248 1.60684 1.41084 1.19795 0.94168 1.03237 0.95734 1.20679 1.00558 0.99799 0.89478 1.18527 0.88850 0.95124 0.88395 1.86179 1.40139 1.74273 1.22109 1.23579 1.03548 0.97560 0.83908 1.21427 0.91789 1.02547 0.99800 1.20586 0.90764 1.01997 0.93847 1.98396 1.23558 1.80670 1.97721 1.17540 0.88029 1.01448 0.85101 1.91561 1.67728 1.94268 1.56827 0.95546 0.94209 0.93409 0.93697 0.90671 0.92570 0.75888 0.81848 0.85745 0.90750 0.90804 0.79446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.51 71.98 0.61 -5.18 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.27 2.24 44.25 0.10 14.37 16 4 H 0.00 0.07 7.58 -2.39 -0.02 0.05 16 5 C -0.55 -28.68 8.73 25.60 0.22 -28.46 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -52.05 11.29 21.45 0.24 -51.81 16 9 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 13 N -0.69 -28.83 4.97 -449.10 -2.23 -31.06 16 14 C 0.54 22.68 6.34 86.74 0.55 23.23 16 15 O -0.57 -28.61 12.47 -3.92 -0.05 -28.66 16 16 C -0.12 -4.05 5.88 -20.07 -0.12 -4.17 16 17 C -0.09 -2.10 9.47 22.63 0.21 -1.88 16 18 C 0.14 2.64 6.68 22.45 0.15 2.79 16 19 O -0.31 -4.91 10.49 -93.03 -0.98 -5.89 16 20 C 0.01 0.05 9.81 113.37 1.11 1.16 16 21 C -0.14 -2.32 8.81 22.43 0.20 -2.12 16 22 C -0.04 -1.04 6.32 22.32 0.14 -0.89 16 23 Cl -0.03 -0.69 28.61 -2.72 -0.08 -0.77 16 24 C 0.10 3.19 7.26 22.69 0.16 3.35 16 25 F -0.13 -4.80 15.10 44.97 0.68 -4.12 16 26 H 0.03 1.31 7.84 -2.39 -0.02 1.30 16 27 H 0.04 1.80 5.65 -2.39 -0.01 1.79 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.07 4.14 5.95 -2.39 -0.01 4.13 16 31 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.40 13.99 6.57 -92.71 -0.61 13.38 16 33 H 0.16 3.55 6.40 -2.91 -0.02 3.53 16 34 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.07 0.29 7.65 -2.38 -0.02 0.27 16 36 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 37 H 0.19 1.70 6.27 -2.91 -0.02 1.68 16 Total: -1.00 -69.36 326.62 4.10 -65.26 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.52 Total: 15.71 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 3.96 Total: -2.22 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.99 Total: -82.87 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.03 Total: -34.55 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.68 Total: -4.12 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -69.36 4.10 -65.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412253536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.342 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds