Wall clock time and date at job start Tue Mar 31 2020 10:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99810 * 2 1 4 4 S 1.65600 * 120.00110 * 179.97438 * 2 1 3 5 5 O 1.42098 * 106.39962 * 336.45922 * 4 2 1 6 6 O 1.42100 * 106.40111 * 203.54195 * 4 2 1 7 7 C 1.76199 * 107.21677 * 89.99957 * 4 2 1 8 8 C 1.38254 * 120.00075 * 269.90828 * 7 4 2 9 9 C 1.38204 * 119.99816 * 179.97438 * 8 7 4 10 10 C 1.38262 * 120.00535 * 0.13864 * 9 8 7 11 11 C 1.38207 * 119.99549 * 359.95204 * 10 9 8 12 12 C 1.50701 * 119.99822 * 180.02562 * 11 10 9 13 13 S 1.81398 * 109.47126 * 269.97520 * 12 11 10 14 14 C 1.81394 * 103.00163 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47210 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00237 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00233 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00063 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46846 * 90.00215 * 19 17 15 21 21 H 1.48500 * 109.47115 * 210.00019 * 19 17 15 22 22 H 1.48503 * 109.47308 * 330.00217 * 19 17 15 23 23 C 1.38220 * 119.99875 * 90.00339 * 7 4 2 24 24 H 1.09003 * 109.47064 * 270.00376 * 1 2 3 25 25 H 1.09005 * 109.46925 * 29.99664 * 1 2 3 26 26 H 1.08993 * 109.47197 * 150.00143 * 1 2 3 27 27 H 1.08999 * 109.47049 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47089 * 299.99555 * 3 2 1 29 29 H 1.09002 * 109.47469 * 59.99959 * 3 2 1 30 30 H 1.07997 * 119.99692 * 0.06811 * 8 7 4 31 31 H 1.08013 * 119.99933 * 180.11390 * 9 8 7 32 32 H 1.07991 * 120.00050 * 179.97438 * 10 9 8 33 33 H 1.08993 * 109.47341 * 29.98219 * 12 11 10 34 34 H 1.09001 * 109.46864 * 149.98303 * 12 11 10 35 35 H 1.09001 * 109.47666 * 300.00399 * 14 13 12 36 36 H 1.09006 * 109.46709 * 60.00388 * 14 13 12 37 37 H 0.96998 * 119.99883 * 180.02562 * 18 17 15 38 38 H 1.08000 * 119.99660 * 0.26988 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4114 -2.4062 0.5455 6 8 3.5759 -1.1565 0.5450 7 6 2.5538 -1.8865 -1.6822 8 6 1.6201 -2.6643 -2.3416 9 6 1.8245 -3.0187 -3.6617 10 6 2.9639 -2.5979 -4.3221 11 6 3.8981 -1.8219 -3.6624 12 6 5.1399 -1.3627 -4.3824 13 16 6.4552 -2.5926 -4.1639 14 6 7.8424 -1.8748 -5.0863 15 6 9.0329 -2.7948 -4.9998 16 1 8.9619 -3.7192 -4.4457 17 6 10.2127 -2.4565 -5.6281 18 7 10.2993 -1.3307 -6.3024 19 14 11.6885 -3.5966 -5.5202 20 1 11.6529 -4.5604 -6.6494 21 1 12.9379 -2.7970 -5.5912 22 1 11.6480 -4.3386 -4.2345 23 6 3.6928 -1.4655 -2.3425 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 3.2691 1.0696 -0.0005 28 1 1.9342 1.8403 -0.8900 29 1 1.9342 1.8404 0.8900 30 1 0.7304 -2.9936 -1.8255 31 1 1.0941 -3.6248 -4.1774 32 1 3.1237 -2.8752 -5.3535 33 1 4.9226 -1.2478 -5.4442 34 1 5.4649 -0.4065 -3.9724 35 1 7.5573 -1.7474 -6.1306 36 1 8.1000 -0.9056 -4.6591 37 1 11.1292 -1.0929 -6.7446 38 1 4.4249 -0.8629 -1.8256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413011071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:40 Heat of formation + Delta-G solvation = -52.916502 kcal Electronic energy + Delta-G solvation = -21169.979714 eV Core-core repulsion = 17844.607474 eV Total energy + Delta-G solvation = -3325.372240 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.41383 -37.45715 -36.45988 -35.98459 -33.17771 -32.96384 -31.36441 -28.59920 -28.46003 -27.08615 -24.99230 -23.35836 -23.14617 -21.84635 -19.14094 -17.95064 -17.61810 -16.52212 -16.44790 -16.22894 -15.52962 -15.39170 -14.95190 -14.62088 -14.54920 -14.32577 -13.64554 -13.41443 -13.10794 -12.99607 -12.88252 -12.69114 -12.48658 -12.41481 -12.32695 -12.19839 -11.95736 -11.91347 -11.81293 -11.41528 -10.91182 -10.86662 -10.73827 -10.24878 -9.64913 -9.51405 -9.36508 -8.99275 -8.70224 -8.63924 -6.76621 -6.22191 -4.26421 0.14901 0.71487 1.10003 2.51907 2.75687 3.25201 3.30880 3.36598 3.47510 3.65592 3.78297 4.07964 4.33961 4.42784 4.61033 4.69177 4.88539 4.96808 5.03139 5.12549 5.15176 5.18632 5.22209 5.32874 5.38932 5.47913 5.57691 5.63202 5.74757 5.88124 5.90515 6.13941 6.16434 6.38111 6.71390 7.04364 7.06144 7.72640 7.97707 8.75496 9.36924 10.89098 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.002844 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.322830 B = 9841.983949 C =10202.217018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.006 6.006 3 C 0.084 3.916 4 S 2.693 3.307 5 O -0.956 6.956 6 O -0.950 6.950 7 C -0.677 4.677 8 C -0.029 4.029 9 C -0.139 4.139 10 C -0.049 4.049 11 C -0.072 4.072 12 C -0.059 4.059 13 S -0.294 6.294 14 C 0.089 3.911 15 C -0.513 4.513 16 H 0.067 0.933 17 C 0.066 3.934 18 N -0.893 5.893 19 Si 0.907 3.093 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.006 4.006 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.696 5.309 8.308 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.845 5.845 3 C -0.062 4.062 4 S 2.784 3.216 5 O -0.946 6.946 6 O -0.940 6.940 7 C -0.764 4.764 8 C -0.049 4.049 9 C -0.158 4.158 10 C -0.068 4.068 11 C -0.074 4.074 12 C -0.207 4.207 13 S -0.065 6.065 14 C -0.057 4.057 15 C -0.552 4.552 16 H 0.086 0.914 17 C -0.138 4.138 18 N -0.532 5.532 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.027 4.027 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.318 4.059 9.479 24.585 hybrid contribution 0.876 0.714 -1.646 1.997 sum -21.442 4.773 7.834 23.322 Atomic orbital electron populations 1.21481 0.78069 1.03230 1.02420 1.57358 1.15359 1.21829 1.89998 1.21623 0.97293 0.84828 1.02408 1.02024 0.73175 0.72343 0.74103 1.93568 1.66191 1.58401 1.76474 1.93604 1.39799 1.84161 1.76423 1.30843 1.04567 1.14690 1.26303 1.20829 0.96851 0.92768 0.94448 1.21236 0.98318 1.01346 0.94858 1.21422 0.92285 0.92832 1.00306 1.19546 0.95073 0.98515 0.94255 1.22235 0.94613 1.01414 1.02397 1.86959 1.11126 1.34169 1.74224 1.21089 0.90577 0.98375 0.95701 1.20674 0.94767 1.06046 1.33708 0.91446 1.24964 0.98670 0.95529 0.94668 1.69949 1.27400 1.22572 1.33235 0.86339 0.81129 0.80305 0.78834 1.20346 1.20936 1.19480 1.20803 0.93724 0.94797 0.93407 0.92138 0.90814 0.90961 0.89329 0.91908 0.91515 0.84581 0.84978 0.84864 0.89593 0.89578 0.94590 0.94500 0.92472 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.33 59.85 0.62 1.20 16 2 N -1.01 -8.65 3.58 -129.20 -0.46 -9.12 16 3 C 0.08 0.59 10.67 59.85 0.64 1.23 16 4 S 2.69 32.30 5.64 -107.50 -0.61 31.69 16 5 O -0.96 -13.12 16.35 -57.17 -0.94 -14.05 16 6 O -0.95 -14.23 15.84 -57.17 -0.91 -15.14 16 7 C -0.68 -8.41 5.97 -39.58 -0.24 -8.64 16 8 C -0.03 -0.32 9.52 -39.59 -0.38 -0.70 16 9 C -0.14 -1.49 10.05 -39.59 -0.40 -1.89 16 10 C -0.05 -0.61 9.70 -39.58 -0.38 -0.99 16 11 C -0.07 -1.04 5.14 -104.63 -0.54 -1.58 16 12 C -0.06 -0.97 6.07 36.01 0.22 -0.75 16 13 S -0.29 -6.39 21.64 -107.50 -2.33 -8.71 16 14 C 0.09 2.30 5.70 36.00 0.21 2.51 16 15 C -0.51 -14.50 9.13 -34.44 -0.31 -14.81 16 16 H 0.07 1.92 7.71 -52.48 -0.40 1.52 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 19 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.01 -0.09 9.18 -39.58 -0.36 -0.45 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 26 H 0.07 0.41 7.79 -51.93 -0.40 0.00 16 27 H 0.09 0.70 6.91 -51.93 -0.36 0.34 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.14 1.20 7.62 -52.49 -0.40 0.80 16 31 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 34 H 0.09 1.33 8.09 -51.92 -0.42 0.91 16 35 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.14 1.90 7.61 -52.49 -0.40 1.50 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -34.21 351.15 -10.58 -44.78 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -5.32 Total: -2.91 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -1.03 Total: -23.14 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.27 Total: -34.25 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.84 Total: -29.19 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 25.91 SS G_CDS: -2.93 Total: 22.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.21 -10.58 -44.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.133 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds