Wall clock time and date at job start Tue Mar 31 2020 10:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99810 * 2 1 4 4 S 1.65600 * 120.00110 * 179.97438 * 2 1 3 5 5 O 1.42098 * 106.39962 * 336.45922 * 4 2 1 6 6 O 1.42100 * 106.40111 * 203.54195 * 4 2 1 7 7 C 1.76199 * 107.21677 * 89.99957 * 4 2 1 8 8 C 1.38254 * 120.00075 * 269.90828 * 7 4 2 9 9 C 1.38204 * 119.99816 * 179.97438 * 8 7 4 10 10 C 1.38262 * 120.00535 * 0.13864 * 9 8 7 11 11 C 1.38207 * 119.99549 * 359.95204 * 10 9 8 12 12 C 1.50701 * 119.99822 * 180.02562 * 11 10 9 13 13 S 1.81398 * 109.47126 * 269.97520 * 12 11 10 14 14 C 1.81394 * 103.00163 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47210 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00237 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00233 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00063 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46846 * 90.00215 * 19 17 15 21 21 H 1.48500 * 109.47115 * 210.00019 * 19 17 15 22 22 H 1.48503 * 109.47308 * 330.00217 * 19 17 15 23 23 C 1.38220 * 119.99875 * 90.00339 * 7 4 2 24 24 H 1.09003 * 109.47064 * 270.00376 * 1 2 3 25 25 H 1.09005 * 109.46925 * 29.99664 * 1 2 3 26 26 H 1.08993 * 109.47197 * 150.00143 * 1 2 3 27 27 H 1.08999 * 109.47049 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47089 * 299.99555 * 3 2 1 29 29 H 1.09002 * 109.47469 * 59.99959 * 3 2 1 30 30 H 1.07997 * 119.99692 * 0.06811 * 8 7 4 31 31 H 1.08013 * 119.99933 * 180.11390 * 9 8 7 32 32 H 1.07991 * 120.00050 * 179.97438 * 10 9 8 33 33 H 1.08993 * 109.47341 * 29.98219 * 12 11 10 34 34 H 1.09001 * 109.46864 * 149.98303 * 12 11 10 35 35 H 1.09001 * 109.47666 * 300.00399 * 14 13 12 36 36 H 1.09006 * 109.46709 * 60.00388 * 14 13 12 37 37 H 0.96998 * 119.99883 * 180.02562 * 18 17 15 38 38 H 1.08000 * 119.99660 * 0.26988 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4114 -2.4062 0.5455 6 8 3.5759 -1.1565 0.5450 7 6 2.5538 -1.8865 -1.6822 8 6 1.6201 -2.6643 -2.3416 9 6 1.8245 -3.0187 -3.6617 10 6 2.9639 -2.5979 -4.3221 11 6 3.8981 -1.8219 -3.6624 12 6 5.1399 -1.3627 -4.3824 13 16 6.4552 -2.5926 -4.1639 14 6 7.8424 -1.8748 -5.0863 15 6 9.0329 -2.7948 -4.9998 16 1 8.9619 -3.7192 -4.4457 17 6 10.2127 -2.4565 -5.6281 18 7 10.2993 -1.3307 -6.3024 19 14 11.6885 -3.5966 -5.5202 20 1 11.6529 -4.5604 -6.6494 21 1 12.9379 -2.7970 -5.5912 22 1 11.6480 -4.3386 -4.2345 23 6 3.6928 -1.4655 -2.3425 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 3.2691 1.0696 -0.0005 28 1 1.9342 1.8403 -0.8900 29 1 1.9342 1.8404 0.8900 30 1 0.7304 -2.9936 -1.8255 31 1 1.0941 -3.6248 -4.1774 32 1 3.1237 -2.8752 -5.3535 33 1 4.9226 -1.2478 -5.4442 34 1 5.4649 -0.4065 -3.9724 35 1 7.5573 -1.7474 -6.1306 36 1 8.1000 -0.9056 -4.6591 37 1 11.1292 -1.0929 -6.7446 38 1 4.4249 -0.8629 -1.8256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413011071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:40 Heat of formation + Delta-G solvation = -74.984186 kcal Electronic energy + Delta-G solvation = -21170.936640 eV Core-core repulsion = 17844.607474 eV Total energy + Delta-G solvation = -3326.329167 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39211 -38.48135 -37.14562 -36.95929 -35.31900 -34.04784 -32.31020 -30.71317 -28.98532 -28.27544 -25.61776 -25.22225 -24.29967 -22.89467 -20.03546 -18.96578 -18.59484 -18.44721 -17.35987 -17.16731 -17.12911 -16.44758 -16.44092 -15.66472 -15.39016 -15.24699 -14.95401 -14.67066 -14.57608 -14.25753 -14.10513 -13.76668 -13.63706 -13.50551 -13.36854 -13.34150 -13.23085 -12.76217 -12.70019 -12.66579 -12.54266 -12.35256 -12.14322 -11.83465 -11.60555 -10.81456 -10.76893 -10.40854 -10.05653 -9.85318 -8.54387 -8.35994 -6.49151 -0.75265 -0.26885 0.04445 1.10818 1.38598 1.39513 1.52283 1.89294 1.97444 2.34766 2.50294 2.71283 2.98604 3.14014 3.54936 3.72429 3.83873 3.95461 4.07200 4.17645 4.34019 4.47656 4.52250 4.59733 4.69277 4.76223 4.84917 4.91154 4.91885 4.94732 4.96831 4.98203 5.04487 5.21094 5.36471 5.54272 5.54415 5.77382 5.86089 6.57814 7.18960 8.75876 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.002844 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.322830 B = 9841.983949 C =10202.217018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.001 6.001 3 C 0.075 3.925 4 S 2.706 3.294 5 O -0.975 6.975 6 O -0.987 6.987 7 C -0.681 4.681 8 C -0.025 4.025 9 C -0.132 4.132 10 C -0.052 4.052 11 C -0.095 4.095 12 C -0.042 4.042 13 S -0.315 6.315 14 C 0.094 3.906 15 C -0.539 4.539 16 H 0.059 0.941 17 C 0.016 3.984 18 N -0.924 5.924 19 Si 0.975 3.025 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.268 1.268 23 C -0.020 4.020 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.147 0.853 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.019 0.981 36 H 0.016 0.984 37 H 0.271 0.729 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.719 4.909 8.266 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.842 5.842 3 C -0.070 4.070 4 S 2.797 3.203 5 O -0.965 6.965 6 O -0.978 6.978 7 C -0.768 4.768 8 C -0.045 4.045 9 C -0.150 4.150 10 C -0.072 4.072 11 C -0.097 4.097 12 C -0.189 4.189 13 S -0.086 6.086 14 C -0.053 4.053 15 C -0.577 4.577 16 H 0.077 0.923 17 C -0.185 4.185 18 N -0.562 5.562 19 Si 0.799 3.201 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.192 1.192 23 C -0.041 4.041 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.180 0.820 31 H 0.187 0.813 32 H 0.165 0.835 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.343 3.657 9.437 26.363 hybrid contribution 1.286 0.912 -1.589 2.239 sum -23.057 4.570 7.848 24.781 Atomic orbital electron populations 1.21795 0.76234 1.04869 1.03426 1.57138 1.16396 1.20921 1.89718 1.21828 0.96487 0.84345 1.04300 1.01413 0.72360 0.72740 0.73779 1.93533 1.66314 1.59760 1.76918 1.93554 1.42006 1.84865 1.77334 1.30905 1.04464 1.15087 1.26356 1.21272 0.97119 0.91373 0.94777 1.21646 0.98093 1.00599 0.94657 1.21683 0.92407 0.92054 1.01067 1.19443 0.94916 1.00646 0.94657 1.22253 0.93274 0.99628 1.03746 1.86797 1.11781 1.36551 1.73458 1.20750 0.92170 0.97286 0.95131 1.20987 0.96304 1.06278 1.34173 0.92263 1.25889 1.01586 0.97055 0.93937 1.70044 1.28449 1.24058 1.33695 0.85291 0.77451 0.78365 0.79038 1.19233 1.19869 1.19243 1.20820 0.94444 0.95434 0.93451 0.91544 0.88273 0.90289 0.90777 0.89875 0.89799 0.81980 0.81322 0.83548 0.88278 0.89138 0.96284 0.96616 0.91989 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.33 127.77 1.32 2.11 16 2 N -1.00 -15.59 3.58 -562.68 -2.02 -17.60 16 3 C 0.08 0.96 10.67 127.77 1.36 2.32 16 4 S 2.71 63.08 5.64 -56.49 -0.32 62.76 16 5 O -0.98 -25.61 16.35 -128.00 -2.09 -27.71 16 6 O -0.99 -30.22 15.84 -128.00 -2.03 -32.25 16 7 C -0.68 -16.08 5.97 22.27 0.13 -15.94 16 8 C -0.03 -0.49 9.52 22.27 0.21 -0.28 16 9 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 10 C -0.05 -1.20 9.70 22.27 0.22 -0.98 16 11 C -0.09 -2.66 5.14 -19.87 -0.10 -2.77 16 12 C -0.04 -1.37 6.07 71.24 0.43 -0.94 16 13 S -0.32 -14.02 21.64 -56.49 -1.22 -15.24 16 14 C 0.09 5.04 5.70 71.24 0.41 5.44 16 15 C -0.54 -31.30 9.13 25.60 0.23 -31.06 16 16 H 0.06 3.46 7.71 -2.91 -0.02 3.44 16 17 C 0.02 0.92 5.46 84.66 0.46 1.39 16 18 N -0.92 -54.39 13.29 21.45 0.28 -54.10 16 19 Si 0.98 44.17 29.54 68.60 2.03 46.20 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 C -0.02 -0.56 9.18 22.27 0.20 -0.35 16 24 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.10 0.48 8.07 -2.38 -0.02 0.46 16 26 H 0.08 0.67 7.79 -2.39 -0.02 0.65 16 27 H 0.07 1.18 6.91 -2.39 -0.02 1.16 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.16 2.27 7.62 -2.91 -0.02 2.25 16 31 H 0.17 1.82 8.06 -2.90 -0.02 1.80 16 32 H 0.15 2.91 8.06 -2.92 -0.02 2.88 16 33 H 0.10 2.96 8.08 -2.39 -0.02 2.95 16 34 H 0.09 2.85 8.09 -2.39 -0.02 2.84 16 35 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.13 3.75 7.61 -2.91 -0.02 3.73 16 Total: -1.00 -75.11 351.15 0.78 -74.33 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.05 Total: 6.84 kcal Atomic # 6 Polarization: -48.33 SS G_CDS: 5.10 Total: -43.23 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -1.73 Total: -71.71 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -4.12 Total: -59.96 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 49.06 SS G_CDS: -1.54 Total: 47.52 kcal Total: -75.11 0.78 -74.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.655 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds