Wall clock time and date at job start Tue Mar 31 2020 10:40:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52998 * 109.47032 * 2 1
4 4 N 1.46504 * 109.46843 * 179.97438 * 3 2 1
5 5 C 1.36892 * 120.00170 * 289.10212 * 4 3 2
6 6 H 1.08006 * 119.99681 * 41.45858 * 5 4 3
7 7 C 1.39031 * 120.00200 * 221.45897 * 5 4 3
8 8 N 1.31365 * 120.00115 * 22.69268 * 7 5 4
9 9 Si 1.86800 * 119.99899 * 202.69513 * 7 5 4
10 10 H 1.48502 * 109.47215 * 359.97438 * 9 7 5
11 11 H 1.48495 * 109.47150 * 119.99719 * 9 7 5
12 12 H 1.48499 * 109.47039 * 240.00062 * 9 7 5
13 13 C 1.34781 * 120.00155 * 109.10215 * 4 3 2
14 14 O 1.21604 * 119.99913 * 186.87237 * 13 4 3
15 15 C 1.47589 * 119.99688 * 6.87522 * 13 4 3
16 16 C 1.39707 * 120.14297 * 324.75185 * 15 13 4
17 17 C 1.38322 * 119.83911 * 180.29578 * 16 15 13
18 18 O 1.35947 * 119.94232 * 179.74783 * 17 16 15
19 19 C 1.42898 * 117.00496 * 179.72282 * 18 17 16
20 20 C 1.38911 * 120.11968 * 359.47400 * 17 16 15
21 21 C 1.38263 * 120.28454 * 0.27208 * 20 17 16
22 22 Cl 1.73595 * 119.92036 * 179.97438 * 21 20 17
23 23 C 1.38414 * 120.16391 * 0.02562 * 21 20 17
24 24 F 1.35095 * 120.06448 * 180.02562 * 23 21 20
25 25 H 1.09004 * 109.47036 * 300.00936 * 1 2 3
26 26 H 1.08999 * 109.46874 * 59.99917 * 1 2 3
27 27 H 1.08992 * 109.47175 * 180.02562 * 1 2 3
28 28 H 1.08995 * 109.46979 * 239.99242 * 2 1 3
29 29 H 1.08999 * 109.46642 * 119.99583 * 2 1 3
30 30 H 1.08995 * 109.47857 * 59.99780 * 3 2 1
31 31 H 1.08999 * 109.47066 * 299.99323 * 3 2 1
32 32 H 0.96998 * 120.00122 * 184.95023 * 8 7 5
33 33 H 1.07997 * 120.08434 * 0.04613 * 16 15 13
34 34 H 1.09002 * 109.47064 * 300.00346 * 19 18 17
35 35 H 1.09005 * 109.46773 * 59.99754 * 19 18 17
36 36 H 1.09000 * 109.47634 * 179.97438 * 19 18 17
37 37 H 1.07993 * 119.85482 * 180.25932 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5051 1.4424 0.0006
5 6 4.1891 1.0546 1.1212
6 1 3.8517 0.2018 1.6916
7 6 5.3180 1.7585 1.5250
8 7 5.4861 3.0046 1.1445
9 14 6.5957 0.9324 2.6086
10 1 6.1743 -0.4623 2.8956
11 1 7.9052 0.9201 1.9084
12 1 6.7232 1.6828 3.8837
13 6 4.1795 1.8242 -1.1021
14 8 5.3890 1.7063 -1.1463
15 6 3.4499 2.3854 -2.2558
16 6 2.1794 1.9056 -2.5833
17 6 1.5039 2.4318 -3.6696
18 8 0.2696 1.9628 -3.9933
19 6 -0.3738 2.5552 -5.1234
20 6 2.0820 3.4426 -4.4271
21 6 3.3369 3.9249 -4.1044
22 17 4.0507 5.1878 -5.0578
23 6 4.0260 3.4026 -3.0235
24 9 5.2518 3.8757 -2.7096
25 1 -0.3633 0.5140 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0276 0.0005
28 1 1.8933 -0.5139 -0.8899
29 1 1.8933 -0.5138 0.8900
30 1 1.6767 1.9564 0.8899
31 1 1.6768 1.9563 -0.8900
32 1 6.3063 3.4728 1.3656
33 1 1.7274 1.1229 -1.9922
34 1 -0.5027 3.6235 -4.9494
35 1 0.2395 2.4031 -6.0116
36 1 -1.3486 2.0905 -5.2714
37 1 1.5490 3.8532 -5.2718
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000413211772.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:40:22
Heat of formation + Delta-G solvation = -64.860441 kcal
Electronic energy + Delta-G solvation = -24957.377920 eV
Core-core repulsion = 21063.230869 eV
Total energy + Delta-G solvation = -3894.147051 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.082 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-48.24151 -40.29359 -38.68909 -37.14229 -36.04170 -35.22310 -32.88178 -31.48339
-30.70850 -29.66661 -27.34900 -25.90140 -25.00978 -23.09537 -22.34899 -20.95466
-20.00776 -18.05575 -17.21693 -16.86215 -16.52210 -15.98781 -15.81446 -15.24562
-15.07248 -14.71646 -14.53236 -13.98925 -13.77656 -13.54064 -13.27328 -12.90607
-12.82631 -12.74189 -12.15686 -12.01423 -11.91128 -11.71060 -11.48747 -11.34645
-10.99643 -10.92850 -10.90095 -10.75505 -10.64828 -10.37963 -10.18341 -9.95497
-8.80902 -8.71838 -8.23958 -7.94812 -7.26620 -6.21793 -3.91439 0.94852
1.24550 2.04454 3.14002 3.28560 3.38554 3.41411 3.43389 4.11467
4.37801 4.49709 4.74829 4.81441 4.91657 5.00451 5.05135 5.20312
5.25821 5.31090 5.44238 5.49507 5.62213 5.70287 5.85450 5.90161
6.06939 6.12094 6.20273 6.28990 6.30561 6.39298 6.65278 6.69668
6.86459 7.24947 7.55594 8.14907 8.91495 9.05936 9.51686 10.13275
10.85358
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.013067 B = 0.005928 C = 0.004212
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2142.351033 B = 4721.888855 C = 6646.525528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.139 4.139
3 C 0.065 3.935
4 N -0.430 5.430
5 C -0.342 4.342
6 H 0.086 0.914
7 C 0.073 3.927
8 N -0.823 5.823
9 Si 0.909 3.091
10 H -0.269 1.269
11 H -0.279 1.279
12 H -0.285 1.285
13 C 0.507 3.493
14 O -0.528 6.528
15 C -0.081 4.081
16 C -0.121 4.121
17 C 0.117 3.883
18 O -0.309 6.309
19 C 0.025 3.975
20 C -0.176 4.176
21 C -0.047 4.047
22 Cl -0.055 7.055
23 C 0.123 3.877
24 F -0.105 7.105
25 H 0.053 0.947
26 H 0.053 0.947
27 H 0.050 0.950
28 H 0.059 0.941
29 H 0.071 0.929
30 H 0.062 0.938
31 H 0.089 0.911
32 H 0.269 0.731
33 H 0.171 0.829
34 H 0.056 0.944
35 H 0.056 0.944
36 H 0.101 0.899
37 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.725 0.477 -10.879 16.748
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.178 4.178
3 C -0.058 4.058
4 N -0.150 5.150
5 C -0.468 4.468
6 H 0.104 0.896
7 C -0.138 4.138
8 N -0.455 5.455
9 Si 0.735 3.265
10 H -0.194 1.194
11 H -0.204 1.204
12 H -0.212 1.212
13 C 0.294 3.706
14 O -0.406 6.406
15 C -0.086 4.086
16 C -0.140 4.140
17 C 0.072 3.928
18 O -0.222 6.222
19 C -0.071 4.071
20 C -0.196 4.196
21 C -0.075 4.075
22 Cl -0.026 7.026
23 C 0.101 3.899
24 F -0.083 7.083
25 H 0.072 0.928
26 H 0.072 0.928
27 H 0.069 0.931
28 H 0.078 0.922
29 H 0.090 0.910
30 H 0.081 0.919
31 H 0.106 0.894
32 H 0.079 0.921
33 H 0.188 0.812
34 H 0.075 0.925
35 H 0.074 0.926
36 H 0.119 0.881
37 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -11.999 0.586 -10.772 16.136
hybrid contribution 0.856 0.294 0.186 0.924
sum -11.144 0.880 -10.586 15.395
Atomic orbital electron populations
1.21743 0.96087 1.01200 1.01701 1.21872 0.94861 0.98322 1.02724
1.22535 0.84398 0.96026 1.02856 1.43140 1.02923 1.58708 1.10229
1.19043 1.11607 1.12201 1.03992 0.89643 1.25231 0.99103 0.93478
0.96037 1.69872 1.25066 1.08174 1.42418 0.86213 0.81742 0.79628
0.78893 1.19374 1.20421 1.21189 1.17347 0.87251 0.84659 0.81327
1.90657 1.13204 1.56302 1.80470 1.20532 0.94114 0.95687 0.98276
1.21273 0.93348 1.03421 0.95935 1.18645 0.85708 0.94063 0.94412
1.86112 1.27741 1.60426 1.47938 1.23090 0.97777 0.98870 0.87314
1.20878 0.95193 1.00345 1.03200 1.20520 0.95393 0.96120 0.95424
1.98361 1.83516 1.50096 1.70603 1.17279 0.82662 0.95517 0.94465
1.91609 1.38512 1.86297 1.91892 0.92765 0.92768 0.93052 0.92226
0.91012 0.91919 0.89403 0.92105 0.81237 0.92531 0.92576 0.88104
0.83874
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16
2 C -0.14 -2.25 5.28 -26.73 -0.14 -2.39 16
3 C 0.07 1.26 4.91 -4.04 -0.02 1.24 16
4 N -0.43 -10.72 2.60 -115.97 -0.30 -11.03 16
5 C -0.34 -9.26 8.92 -15.00 -0.13 -9.40 16
6 H 0.09 2.20 7.39 -52.48 -0.39 1.81 16
7 C 0.07 2.06 4.24 -17.46 -0.07 1.99 16
8 N -0.82 -24.49 12.05 55.50 0.67 -23.82 16
9 Si 0.91 21.85 29.61 -169.99 -5.03 16.82 16
10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
13 C 0.51 13.27 6.45 -12.44 -0.08 13.19 16
14 O -0.53 -16.00 14.16 5.27 0.07 -15.92 16
15 C -0.08 -1.74 5.52 -104.93 -0.58 -2.31 16
16 C -0.12 -2.08 7.37 -39.00 -0.29 -2.37 16
17 C 0.12 1.70 6.68 -39.30 -0.26 1.44 16
18 O -0.31 -3.76 10.49 -19.57 -0.21 -3.97 16
19 C 0.02 0.19 9.81 101.05 0.99 1.18 16
20 C -0.18 -2.44 8.81 -39.32 -0.35 -2.79 16
21 C -0.05 -0.78 6.32 -39.51 -0.25 -1.03 16
22 Cl -0.05 -0.81 28.60 -51.86 -1.48 -2.30 16
23 C 0.12 2.56 7.21 -38.92 -0.28 2.28 16
24 F -0.11 -2.51 15.68 2.25 0.04 -2.48 16
25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
28 H 0.06 0.96 7.46 -51.93 -0.39 0.58 16
29 H 0.07 1.24 7.50 -51.93 -0.39 0.85 16
30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
31 H 0.09 1.57 3.46 -56.26 -0.19 1.37 16
32 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16
33 H 0.17 2.76 3.91 -52.49 -0.21 2.56 16
34 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16
35 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16
36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16
37 H 0.14 1.50 6.27 -52.49 -0.33 1.17 16
LS Contribution 326.26 15.07 4.92 4.92
Total: -1.00 -33.32 326.26 -6.36 -39.68
By element:
Atomic # 1 Polarization: 2.51 SS G_CDS: -3.94 Total: -1.42 kcal
Atomic # 6 Polarization: 0.61 SS G_CDS: -1.10 Total: -0.48 kcal
Atomic # 7 Polarization: -35.21 SS G_CDS: 0.37 Total: -34.84 kcal
Atomic # 8 Polarization: -19.76 SS G_CDS: -0.13 Total: -19.89 kcal
Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.48 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal
Atomic # 17 Polarization: -0.81 SS G_CDS: -1.48 Total: -2.30 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -33.32 -6.36 -39.68 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000413211772.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.182 kcal
(2) G-P(sol) polarization free energy of solvation -33.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.860 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds