Wall clock time and date at job start Tue Mar 31 2020 10:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 N 1.46504 * 109.46843 * 179.97438 * 3 2 1 5 5 C 1.36892 * 120.00170 * 289.10212 * 4 3 2 6 6 H 1.08006 * 119.99681 * 41.45858 * 5 4 3 7 7 C 1.39031 * 120.00200 * 221.45897 * 5 4 3 8 8 N 1.31365 * 120.00115 * 22.69268 * 7 5 4 9 9 Si 1.86800 * 119.99899 * 202.69513 * 7 5 4 10 10 H 1.48502 * 109.47215 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47150 * 119.99719 * 9 7 5 12 12 H 1.48499 * 109.47039 * 240.00062 * 9 7 5 13 13 C 1.34781 * 120.00155 * 109.10215 * 4 3 2 14 14 O 1.21604 * 119.99913 * 186.87237 * 13 4 3 15 15 C 1.47589 * 119.99688 * 6.87522 * 13 4 3 16 16 C 1.39707 * 120.14297 * 324.75185 * 15 13 4 17 17 C 1.38322 * 119.83911 * 180.29578 * 16 15 13 18 18 O 1.35947 * 119.94232 * 179.74783 * 17 16 15 19 19 C 1.42898 * 117.00496 * 179.72282 * 18 17 16 20 20 C 1.38911 * 120.11968 * 359.47400 * 17 16 15 21 21 C 1.38263 * 120.28454 * 0.27208 * 20 17 16 22 22 Cl 1.73595 * 119.92036 * 179.97438 * 21 20 17 23 23 C 1.38414 * 120.16391 * 0.02562 * 21 20 17 24 24 F 1.35095 * 120.06448 * 180.02562 * 23 21 20 25 25 H 1.09004 * 109.47036 * 300.00936 * 1 2 3 26 26 H 1.08999 * 109.46874 * 59.99917 * 1 2 3 27 27 H 1.08992 * 109.47175 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46979 * 239.99242 * 2 1 3 29 29 H 1.08999 * 109.46642 * 119.99583 * 2 1 3 30 30 H 1.08995 * 109.47857 * 59.99780 * 3 2 1 31 31 H 1.08999 * 109.47066 * 299.99323 * 3 2 1 32 32 H 0.96998 * 120.00122 * 184.95023 * 8 7 5 33 33 H 1.07997 * 120.08434 * 0.04613 * 16 15 13 34 34 H 1.09002 * 109.47064 * 300.00346 * 19 18 17 35 35 H 1.09005 * 109.46773 * 59.99754 * 19 18 17 36 36 H 1.09000 * 109.47634 * 179.97438 * 19 18 17 37 37 H 1.07993 * 119.85482 * 180.25932 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1891 1.0546 1.1212 6 1 3.8517 0.2018 1.6916 7 6 5.3180 1.7585 1.5250 8 7 5.4861 3.0046 1.1445 9 14 6.5957 0.9324 2.6086 10 1 6.1743 -0.4623 2.8956 11 1 7.9052 0.9201 1.9084 12 1 6.7232 1.6828 3.8837 13 6 4.1795 1.8242 -1.1021 14 8 5.3890 1.7063 -1.1463 15 6 3.4499 2.3854 -2.2558 16 6 2.1794 1.9056 -2.5833 17 6 1.5039 2.4318 -3.6696 18 8 0.2696 1.9628 -3.9933 19 6 -0.3738 2.5552 -5.1234 20 6 2.0820 3.4426 -4.4271 21 6 3.3369 3.9249 -4.1044 22 17 4.0507 5.1878 -5.0578 23 6 4.0260 3.4026 -3.0235 24 9 5.2518 3.8757 -2.7096 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 6.3063 3.4728 1.3656 33 1 1.7274 1.1229 -1.9922 34 1 -0.5027 3.6235 -4.9494 35 1 0.2395 2.4031 -6.0116 36 1 -1.3486 2.0905 -5.2714 37 1 1.5490 3.8532 -5.2718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413211772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:22 Heat of formation + Delta-G solvation = -64.860441 kcal Electronic energy + Delta-G solvation = -24957.377920 eV Core-core repulsion = 21063.230869 eV Total energy + Delta-G solvation = -3894.147051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.24151 -40.29359 -38.68909 -37.14229 -36.04170 -35.22310 -32.88178 -31.48339 -30.70850 -29.66661 -27.34900 -25.90140 -25.00978 -23.09537 -22.34899 -20.95466 -20.00776 -18.05575 -17.21693 -16.86215 -16.52210 -15.98781 -15.81446 -15.24562 -15.07248 -14.71646 -14.53236 -13.98925 -13.77656 -13.54064 -13.27328 -12.90607 -12.82631 -12.74189 -12.15686 -12.01423 -11.91128 -11.71060 -11.48747 -11.34645 -10.99643 -10.92850 -10.90095 -10.75505 -10.64828 -10.37963 -10.18341 -9.95497 -8.80902 -8.71838 -8.23958 -7.94812 -7.26620 -6.21793 -3.91439 0.94852 1.24550 2.04454 3.14002 3.28560 3.38554 3.41411 3.43389 4.11467 4.37801 4.49709 4.74829 4.81441 4.91657 5.00451 5.05135 5.20312 5.25821 5.31090 5.44238 5.49507 5.62213 5.70287 5.85450 5.90161 6.06939 6.12094 6.20273 6.28990 6.30561 6.39298 6.65278 6.69668 6.86459 7.24947 7.55594 8.14907 8.91495 9.05936 9.51686 10.13275 10.85358 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013067 B = 0.005928 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.351033 B = 4721.888855 C = 6646.525528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.065 3.935 4 N -0.430 5.430 5 C -0.342 4.342 6 H 0.086 0.914 7 C 0.073 3.927 8 N -0.823 5.823 9 Si 0.909 3.091 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.285 1.285 13 C 0.507 3.493 14 O -0.528 6.528 15 C -0.081 4.081 16 C -0.121 4.121 17 C 0.117 3.883 18 O -0.309 6.309 19 C 0.025 3.975 20 C -0.176 4.176 21 C -0.047 4.047 22 Cl -0.055 7.055 23 C 0.123 3.877 24 F -0.105 7.105 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.269 0.731 33 H 0.171 0.829 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 0.477 -10.879 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.058 4.058 4 N -0.150 5.150 5 C -0.468 4.468 6 H 0.104 0.896 7 C -0.138 4.138 8 N -0.455 5.455 9 Si 0.735 3.265 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.212 1.212 13 C 0.294 3.706 14 O -0.406 6.406 15 C -0.086 4.086 16 C -0.140 4.140 17 C 0.072 3.928 18 O -0.222 6.222 19 C -0.071 4.071 20 C -0.196 4.196 21 C -0.075 4.075 22 Cl -0.026 7.026 23 C 0.101 3.899 24 F -0.083 7.083 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.188 0.812 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.999 0.586 -10.772 16.136 hybrid contribution 0.856 0.294 0.186 0.924 sum -11.144 0.880 -10.586 15.395 Atomic orbital electron populations 1.21743 0.96087 1.01200 1.01701 1.21872 0.94861 0.98322 1.02724 1.22535 0.84398 0.96026 1.02856 1.43140 1.02923 1.58708 1.10229 1.19043 1.11607 1.12201 1.03992 0.89643 1.25231 0.99103 0.93478 0.96037 1.69872 1.25066 1.08174 1.42418 0.86213 0.81742 0.79628 0.78893 1.19374 1.20421 1.21189 1.17347 0.87251 0.84659 0.81327 1.90657 1.13204 1.56302 1.80470 1.20532 0.94114 0.95687 0.98276 1.21273 0.93348 1.03421 0.95935 1.18645 0.85708 0.94063 0.94412 1.86112 1.27741 1.60426 1.47938 1.23090 0.97777 0.98870 0.87314 1.20878 0.95193 1.00345 1.03200 1.20520 0.95393 0.96120 0.95424 1.98361 1.83516 1.50096 1.70603 1.17279 0.82662 0.95517 0.94465 1.91609 1.38512 1.86297 1.91892 0.92765 0.92768 0.93052 0.92226 0.91012 0.91919 0.89403 0.92105 0.81237 0.92531 0.92576 0.88104 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.14 -2.25 5.28 -26.73 -0.14 -2.39 16 3 C 0.07 1.26 4.91 -4.04 -0.02 1.24 16 4 N -0.43 -10.72 2.60 -115.97 -0.30 -11.03 16 5 C -0.34 -9.26 8.92 -15.00 -0.13 -9.40 16 6 H 0.09 2.20 7.39 -52.48 -0.39 1.81 16 7 C 0.07 2.06 4.24 -17.46 -0.07 1.99 16 8 N -0.82 -24.49 12.05 55.50 0.67 -23.82 16 9 Si 0.91 21.85 29.61 -169.99 -5.03 16.82 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.51 13.27 6.45 -12.44 -0.08 13.19 16 14 O -0.53 -16.00 14.16 5.27 0.07 -15.92 16 15 C -0.08 -1.74 5.52 -104.93 -0.58 -2.31 16 16 C -0.12 -2.08 7.37 -39.00 -0.29 -2.37 16 17 C 0.12 1.70 6.68 -39.30 -0.26 1.44 16 18 O -0.31 -3.76 10.49 -19.57 -0.21 -3.97 16 19 C 0.02 0.19 9.81 101.05 0.99 1.18 16 20 C -0.18 -2.44 8.81 -39.32 -0.35 -2.79 16 21 C -0.05 -0.78 6.32 -39.51 -0.25 -1.03 16 22 Cl -0.05 -0.81 28.60 -51.86 -1.48 -2.30 16 23 C 0.12 2.56 7.21 -38.92 -0.28 2.28 16 24 F -0.11 -2.51 15.68 2.25 0.04 -2.48 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.96 7.46 -51.93 -0.39 0.58 16 29 H 0.07 1.24 7.50 -51.93 -0.39 0.85 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.57 3.46 -56.26 -0.19 1.37 16 32 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.17 2.76 3.91 -52.49 -0.21 2.56 16 34 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 35 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.14 1.50 6.27 -52.49 -0.33 1.17 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -33.32 326.26 -6.36 -39.68 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -3.94 Total: -1.42 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.10 Total: -0.48 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.37 Total: -34.84 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.13 Total: -19.89 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.48 Total: -2.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.32 -6.36 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413211772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.182 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds