Wall clock time and date at job start Tue Mar 31 2020 10:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 N 1.46504 * 109.46843 * 179.97438 * 3 2 1 5 5 C 1.36892 * 120.00170 * 289.10212 * 4 3 2 6 6 H 1.08006 * 119.99681 * 41.45858 * 5 4 3 7 7 C 1.39031 * 120.00200 * 221.45897 * 5 4 3 8 8 N 1.31365 * 120.00115 * 22.69268 * 7 5 4 9 9 Si 1.86800 * 119.99899 * 202.69513 * 7 5 4 10 10 H 1.48502 * 109.47215 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47150 * 119.99719 * 9 7 5 12 12 H 1.48499 * 109.47039 * 240.00062 * 9 7 5 13 13 C 1.34781 * 120.00155 * 109.10215 * 4 3 2 14 14 O 1.21604 * 119.99913 * 186.87237 * 13 4 3 15 15 C 1.47589 * 119.99688 * 6.87522 * 13 4 3 16 16 C 1.39707 * 120.14297 * 324.75185 * 15 13 4 17 17 C 1.38322 * 119.83911 * 180.29578 * 16 15 13 18 18 O 1.35947 * 119.94232 * 179.74783 * 17 16 15 19 19 C 1.42898 * 117.00496 * 179.72282 * 18 17 16 20 20 C 1.38911 * 120.11968 * 359.47400 * 17 16 15 21 21 C 1.38263 * 120.28454 * 0.27208 * 20 17 16 22 22 Cl 1.73595 * 119.92036 * 179.97438 * 21 20 17 23 23 C 1.38414 * 120.16391 * 0.02562 * 21 20 17 24 24 F 1.35095 * 120.06448 * 180.02562 * 23 21 20 25 25 H 1.09004 * 109.47036 * 300.00936 * 1 2 3 26 26 H 1.08999 * 109.46874 * 59.99917 * 1 2 3 27 27 H 1.08992 * 109.47175 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46979 * 239.99242 * 2 1 3 29 29 H 1.08999 * 109.46642 * 119.99583 * 2 1 3 30 30 H 1.08995 * 109.47857 * 59.99780 * 3 2 1 31 31 H 1.08999 * 109.47066 * 299.99323 * 3 2 1 32 32 H 0.96998 * 120.00122 * 184.95023 * 8 7 5 33 33 H 1.07997 * 120.08434 * 0.04613 * 16 15 13 34 34 H 1.09002 * 109.47064 * 300.00346 * 19 18 17 35 35 H 1.09005 * 109.46773 * 59.99754 * 19 18 17 36 36 H 1.09000 * 109.47634 * 179.97438 * 19 18 17 37 37 H 1.07993 * 119.85482 * 180.25932 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1891 1.0546 1.1212 6 1 3.8517 0.2018 1.6916 7 6 5.3180 1.7585 1.5250 8 7 5.4861 3.0046 1.1445 9 14 6.5957 0.9324 2.6086 10 1 6.1743 -0.4623 2.8956 11 1 7.9052 0.9201 1.9084 12 1 6.7232 1.6828 3.8837 13 6 4.1795 1.8242 -1.1021 14 8 5.3890 1.7063 -1.1463 15 6 3.4499 2.3854 -2.2558 16 6 2.1794 1.9056 -2.5833 17 6 1.5039 2.4318 -3.6696 18 8 0.2696 1.9628 -3.9933 19 6 -0.3738 2.5552 -5.1234 20 6 2.0820 3.4426 -4.4271 21 6 3.3369 3.9249 -4.1044 22 17 4.0507 5.1878 -5.0578 23 6 4.0260 3.4026 -3.0235 24 9 5.2518 3.8757 -2.7096 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 6.3063 3.4728 1.3656 33 1 1.7274 1.1229 -1.9922 34 1 -0.5027 3.6235 -4.9494 35 1 0.2395 2.4031 -6.0116 36 1 -1.3486 2.0905 -5.2714 37 1 1.5490 3.8532 -5.2718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413211772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:21 Heat of formation + Delta-G solvation = -86.283943 kcal Electronic energy + Delta-G solvation = -24958.306912 eV Core-core repulsion = 21063.230869 eV Total energy + Delta-G solvation = -3895.076043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.89545 -41.62617 -40.25501 -38.41756 -37.37361 -36.98783 -34.72863 -33.04085 -32.28675 -30.94282 -28.26353 -27.49769 -26.68012 -24.51070 -23.81231 -22.32778 -21.65217 -19.52105 -18.66240 -18.29651 -18.19705 -17.53599 -17.00868 -16.89588 -16.45289 -16.26312 -15.96573 -15.82509 -15.31703 -14.95353 -14.76166 -14.26079 -14.13084 -14.00815 -13.62236 -13.54014 -13.37596 -13.01049 -12.95504 -12.78063 -12.56121 -12.52506 -12.21099 -12.17035 -12.11128 -11.84686 -11.65680 -11.37754 -10.82990 -10.38409 -9.99535 -9.32489 -9.21103 -8.30939 -6.04735 -0.42091 -0.14277 0.74767 1.35005 1.43704 1.52099 1.93018 2.15596 2.25363 2.57647 2.94250 3.07690 3.23908 3.56883 3.66865 3.83143 4.09774 4.17089 4.28015 4.32372 4.43228 4.50419 4.56460 4.64098 4.73096 4.79258 4.84154 4.87695 4.91366 5.11844 5.25283 5.27574 5.33955 5.45550 5.57977 6.10089 6.22211 6.89497 7.07964 7.52002 8.16486 8.76169 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013067 B = 0.005928 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.351033 B = 4721.888855 C = 6646.525528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C 0.063 3.937 4 N -0.445 5.445 5 C -0.357 4.357 6 H 0.093 0.907 7 C 0.022 3.978 8 N -0.867 5.867 9 Si 0.968 3.032 10 H -0.251 1.251 11 H -0.296 1.296 12 H -0.272 1.272 13 C 0.497 3.503 14 O -0.586 6.586 15 C -0.109 4.109 16 C -0.119 4.119 17 C 0.142 3.858 18 O -0.309 6.309 19 C 0.007 3.993 20 C -0.150 4.150 21 C -0.040 4.040 22 Cl -0.036 7.036 23 C 0.081 3.919 24 F -0.136 7.136 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.262 0.738 33 H 0.178 0.822 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.373 0.046 -12.957 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C -0.059 4.059 4 N -0.164 5.164 5 C -0.484 4.484 6 H 0.110 0.890 7 C -0.185 4.185 8 N -0.502 5.502 9 Si 0.792 3.208 10 H -0.175 1.175 11 H -0.223 1.223 12 H -0.198 1.198 13 C 0.286 3.714 14 O -0.469 6.469 15 C -0.114 4.114 16 C -0.138 4.138 17 C 0.095 3.905 18 O -0.222 6.222 19 C -0.086 4.086 20 C -0.170 4.170 21 C -0.068 4.068 22 Cl -0.007 7.007 23 C 0.060 3.940 24 F -0.115 7.115 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.195 0.805 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.726 0.137 -12.845 20.306 hybrid contribution 1.754 0.436 0.588 1.900 sum -13.973 0.573 -12.257 18.596 Atomic orbital electron populations 1.21688 0.92623 1.02825 1.02678 1.21789 0.97692 0.95553 1.01920 1.22771 0.81186 0.98525 1.03403 1.43387 1.05164 1.58411 1.09446 1.19365 1.12356 1.12341 1.04333 0.88950 1.26115 1.01057 0.93853 0.97476 1.69983 1.25216 1.09710 1.45292 0.85303 0.78304 0.79717 0.77432 1.17472 1.22317 1.19790 1.18084 0.87039 0.83618 0.82627 1.90587 1.15845 1.58379 1.82086 1.20134 0.96019 0.97539 0.97663 1.21189 0.91920 1.03494 0.97225 1.18502 0.86413 0.92804 0.92767 1.86148 1.25956 1.60481 1.49646 1.23585 0.98886 1.00091 0.86075 1.21344 0.93567 0.98693 1.03364 1.20586 0.95848 0.96119 0.94214 1.98369 1.83589 1.49133 1.69648 1.17672 0.82440 0.97186 0.96711 1.91517 1.40591 1.86875 1.92495 0.92287 0.91302 0.91110 0.92346 0.92568 0.92612 0.87590 0.92902 0.80491 0.90930 0.91009 0.85324 0.79327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.91 71.98 0.71 -2.39 16 2 C -0.13 -4.11 5.28 30.59 0.16 -3.95 16 3 C 0.06 2.45 4.91 86.38 0.42 2.88 16 4 N -0.45 -23.05 2.60 -639.08 -1.66 -24.71 16 5 C -0.36 -20.08 8.92 84.09 0.75 -19.34 16 6 H 0.09 4.88 7.39 -2.91 -0.02 4.86 16 7 C 0.02 1.28 4.24 84.95 0.36 1.64 16 8 N -0.87 -54.72 12.05 21.68 0.26 -54.46 16 9 Si 0.97 46.77 29.61 68.60 2.03 48.80 16 10 H -0.25 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.50 27.38 6.45 86.71 0.56 27.94 16 14 O -0.59 -37.96 14.16 -4.04 -0.06 -38.02 16 15 C -0.11 -4.79 5.52 -20.07 -0.11 -4.90 16 16 C -0.12 -3.95 7.37 22.64 0.17 -3.78 16 17 C 0.14 3.59 6.68 22.45 0.15 3.74 16 18 O -0.31 -5.92 10.49 -92.95 -0.98 -6.90 16 19 C 0.01 0.07 9.81 113.37 1.11 1.18 16 20 C -0.15 -3.55 8.81 22.44 0.20 -3.35 16 21 C -0.04 -1.27 6.32 22.32 0.14 -1.12 16 22 Cl -0.04 -1.02 28.60 -2.72 -0.08 -1.10 16 23 C 0.08 3.49 7.21 22.70 0.16 3.65 16 24 F -0.14 -6.94 15.68 44.97 0.70 -6.23 16 25 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.83 7.46 -2.39 -0.02 1.82 16 29 H 0.06 1.92 7.50 -2.39 -0.02 1.91 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.11 3.71 3.46 -6.45 -0.02 3.69 16 32 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 33 H 0.18 5.48 3.91 -2.91 -0.01 5.46 16 34 H 0.07 0.51 7.66 -2.39 -0.02 0.50 16 35 H 0.07 0.51 7.65 -2.38 -0.02 0.50 16 36 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.19 2.74 6.27 -2.91 -0.02 2.72 16 Total: -1.00 -79.78 326.26 6.12 -73.66 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.11 Total: 6.76 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 4.79 Total: 2.20 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -1.40 Total: -79.17 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.03 Total: -44.91 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.70 Total: -6.23 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -79.78 6.12 -73.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413211772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.623 kcal (2) G-P(sol) polarization free energy of solvation -79.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds