Wall clock time and date at job start Tue Mar 31 2020 11:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99898 * 2 1 4 4 N 1.46891 * 109.47412 * 124.15752 * 3 2 1 5 5 C 1.46902 * 111.00106 * 300.34917 * 4 3 2 6 6 C 1.50698 * 109.47245 * 288.26507 * 5 4 3 7 7 H 1.08002 * 119.99875 * 354.76080 * 6 5 4 8 8 C 1.37871 * 120.00248 * 174.76319 * 6 5 4 9 9 N 1.31513 * 120.00068 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00285 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47241 * 59.99984 * 10 8 6 12 12 H 1.48497 * 109.47375 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46888 * 300.00200 * 10 8 6 14 14 C 1.46899 * 111.00072 * 64.30262 * 4 3 2 15 15 C 1.50700 * 109.46975 * 66.05046 * 14 4 3 16 16 C 1.33383 * 125.20494 * 90.00386 * 15 14 4 17 17 C 1.38430 * 114.91987 * 179.78941 * 16 15 14 18 18 C 1.33389 * 114.91683 * 0.43085 * 17 16 15 19 19 S 1.76209 * 125.20050 * 179.85940 * 18 17 16 20 20 C 1.81401 * 104.44835 * 89.71566 * 19 18 17 21 21 O 1.42101 * 104.27366 * 333.64552 * 19 18 17 22 22 O 1.42096 * 104.27901 * 205.78886 * 19 18 17 23 23 S 1.75875 * 109.59717 * 359.59092 * 18 17 16 24 24 H 1.07997 * 119.99595 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.00453 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00453 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46916 * 4.15307 * 3 2 1 28 28 H 1.08997 * 109.47111 * 244.15979 * 3 2 1 29 29 H 1.09001 * 109.46973 * 48.25996 * 5 4 3 30 30 H 1.08999 * 109.47379 * 168.26201 * 5 4 3 31 31 H 0.97001 * 120.00399 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.47311 * 306.04899 * 14 4 3 33 33 H 1.09003 * 109.47100 * 186.04467 * 14 4 3 34 34 H 1.07994 * 122.54140 * 0.02562 * 16 15 14 35 35 H 1.07998 * 122.54314 * 180.26684 * 17 16 15 36 36 H 1.09000 * 109.47068 * 300.00013 * 20 19 18 37 37 H 1.08993 * 109.47250 * 59.99926 * 20 19 18 38 38 H 1.09002 * 109.47320 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9817 1.3405 1.1460 5 6 2.2484 1.2122 2.4124 6 6 1.4856 2.4835 2.6823 7 1 1.6061 3.3347 2.0284 8 6 0.6341 2.5602 3.7638 9 7 0.4877 1.5240 4.5603 10 14 -0.3109 4.1364 4.0988 11 1 -1.1792 4.4497 2.9356 12 1 -1.1504 3.9622 5.3111 13 1 0.6465 5.2508 4.3161 14 6 4.0125 0.3007 1.0269 15 6 4.8995 0.6054 -0.1527 16 6 6.0116 1.3406 -0.1089 17 6 6.6662 1.4808 -1.3205 18 6 6.0807 0.8669 -2.3499 19 16 6.6774 0.8710 -4.0079 20 6 7.7722 -0.5726 -4.0985 21 8 7.4283 2.0733 -4.1071 22 8 5.5151 0.6658 -4.7992 23 16 4.6264 0.0464 -1.7978 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3574 2.1323 0.0744 28 1 2.6330 1.3958 -0.9249 29 1 1.5508 0.3773 2.3453 30 1 2.9534 1.0322 3.2239 31 1 -0.1111 1.5781 5.3215 32 1 3.5357 -0.6688 0.8821 33 1 4.6127 0.2782 1.9365 34 1 6.3758 1.7892 0.8035 35 1 7.5801 2.0467 -1.4250 36 1 8.5800 -0.4619 -3.3751 37 1 7.2035 -1.4746 -3.8729 38 1 8.1914 -0.6483 -5.1018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414458642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:17 Heat of formation + Delta-G solvation = -4.045574 kcal Electronic energy + Delta-G solvation = -21592.738057 eV Core-core repulsion = 18269.485019 eV Total energy + Delta-G solvation = -3323.253038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.43561 -37.29537 -36.95343 -36.11496 -32.87663 -32.54938 -30.49295 -29.79081 -27.33731 -26.35032 -24.52682 -22.79413 -21.06456 -20.32077 -19.21196 -18.64302 -17.61752 -16.44182 -16.32506 -16.22191 -15.62808 -15.24352 -14.94050 -14.60342 -14.37349 -13.88695 -13.60661 -13.54256 -13.20277 -12.83623 -12.67486 -12.30313 -12.23207 -12.19206 -11.99665 -11.84749 -11.35919 -11.26401 -11.06163 -11.02987 -10.81422 -10.77962 -10.66358 -10.52432 -10.02264 -9.38093 -9.05218 -8.81908 -8.45394 -8.42355 -7.41131 -6.06044 -4.07291 -0.16922 0.54442 1.43556 1.81798 2.52205 2.71348 2.83155 3.31587 3.35724 3.39002 3.67890 3.99010 4.39394 4.44165 4.70358 4.77473 5.00793 5.25564 5.28352 5.29802 5.38018 5.44541 5.48344 5.74073 5.82274 5.91663 6.04337 6.21221 6.35124 6.38902 6.59148 7.06752 7.12731 7.23919 7.34816 7.73552 7.95009 8.07383 8.43786 8.99869 9.56856 11.04403 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.024967 B = 0.003244 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.213871 B = 8630.501490 C = 8898.740871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.186 4.186 3 C 0.080 3.920 4 N -0.521 5.521 5 C 0.192 3.808 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.106 3.894 15 C -0.100 4.100 16 C -0.163 4.163 17 C 0.014 3.986 18 C -0.797 4.797 19 S 2.530 3.470 20 C -0.650 4.650 21 O -0.935 6.935 22 O -0.935 6.935 23 S 0.201 5.799 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.009 0.991 30 H 0.024 0.976 31 H 0.262 0.738 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.667 -7.278 -14.317 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.206 4.206 3 C -0.048 4.048 4 N -0.244 5.244 5 C 0.067 3.933 6 C -0.543 4.543 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.024 4.024 15 C -0.220 4.220 16 C -0.193 4.193 17 C -0.022 4.022 18 C -0.998 4.998 19 S 2.706 3.294 20 C -0.800 4.800 21 O -0.933 6.933 22 O -0.932 6.932 23 S 0.468 5.532 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.027 0.973 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.475 -7.183 -15.461 21.125 hybrid contribution 0.211 0.304 1.846 1.883 sum 12.687 -6.879 -13.615 19.841 Atomic orbital electron populations 1.23718 0.95948 1.01324 0.99820 1.23455 0.96850 0.99387 1.00909 1.21421 0.94902 0.94883 0.93574 1.62516 1.13803 1.43370 1.04746 1.19815 0.92272 0.97554 0.83643 1.21047 1.23839 0.98559 1.10878 0.91967 1.24948 0.96850 0.96500 0.96091 1.69938 1.37986 1.29720 1.16143 0.86583 0.79825 0.83591 0.77555 1.20251 1.21396 1.20175 1.20796 0.93603 0.94765 0.93266 1.25318 0.98496 0.99900 0.98326 1.20323 0.96713 1.02655 0.99614 1.19972 0.98780 0.93018 0.90412 1.35254 1.14041 1.23481 1.27048 1.04388 0.75617 0.76525 0.72858 1.30238 1.16985 1.21156 1.11626 1.93580 1.73192 1.41291 1.85204 1.93597 1.46336 1.86649 1.66642 1.84227 1.20130 1.48611 1.00267 0.89509 0.88303 0.88830 0.89253 0.91771 0.97274 0.95748 0.92882 0.93803 0.88765 0.83172 0.83100 0.84909 0.84946 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 14.32 29.01 0.42 -2.55 16 2 C -0.19 -3.31 7.42 -36.02 -0.27 -3.58 16 3 C 0.08 1.53 5.46 -4.98 -0.03 1.50 16 4 N -0.52 -10.60 4.65 -238.97 -1.11 -11.71 16 5 C 0.19 4.71 4.58 -4.98 -0.02 4.69 16 6 C -0.50 -13.71 8.52 -34.44 -0.29 -14.01 16 7 H 0.06 1.70 7.66 -52.49 -0.40 1.30 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 10 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.11 1.75 5.29 -4.98 -0.03 1.72 16 15 C -0.10 -1.45 5.25 -36.01 -0.19 -1.64 16 16 C -0.16 -2.13 10.05 -41.21 -0.41 -2.54 16 17 C 0.01 0.16 9.78 -41.21 -0.40 -0.24 16 18 C -0.80 -9.30 6.22 29.04 0.18 -9.12 16 19 S 2.53 24.78 5.94 -107.50 -0.64 24.14 16 20 C -0.65 -3.20 10.80 101.05 1.09 -2.11 16 21 O -0.94 -11.79 17.64 -57.54 -1.02 -12.81 16 22 O -0.93 -12.35 17.77 -57.54 -1.02 -13.38 16 23 S 0.20 2.65 21.58 -107.50 -2.32 0.33 16 24 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.10 1.77 7.84 -52.49 -0.41 1.36 16 26 H 0.09 1.54 6.80 -52.49 -0.36 1.18 16 27 H 0.09 1.86 7.03 -51.93 -0.37 1.50 16 28 H 0.06 1.13 5.81 -51.93 -0.30 0.82 16 29 H 0.01 0.25 6.71 -51.93 -0.35 -0.10 16 30 H 0.02 0.64 7.81 -51.93 -0.41 0.23 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 0.70 6.35 -51.93 -0.33 0.37 16 33 H 0.09 1.50 7.86 -51.93 -0.41 1.09 16 34 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.15 1.36 8.01 -52.49 -0.42 0.94 16 36 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -33.94 345.62 -10.24 -44.17 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.00 Total: -0.69 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.37 Total: -36.97 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -2.04 Total: -26.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 27.43 SS G_CDS: -2.96 Total: 24.47 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.94 -10.24 -44.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414458642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.127 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds