Wall clock time and date at job start Tue Mar 31 2020 10:55:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 O 1.45197 * 109.46838 * 2 1
4 4 C 1.34800 * 116.99816 * 179.97438 * 3 2 1
5 5 O 1.21552 * 120.00017 * 359.97438 * 4 3 2
6 6 C 1.47108 * 120.00154 * 179.97438 * 4 3 2
7 7 C 1.35296 * 123.15883 * 179.97438 * 6 4 3
8 8 S 1.70939 * 108.82058 * 179.77616 * 7 6 4
9 9 C 1.70765 * 91.13910 * 0.33044 * 8 7 6
10 10 C 1.50701 * 124.70929 * 179.91690 * 9 8 7
11 11 S 1.81393 * 109.47519 * 269.70580 * 10 9 8
12 12 C 1.81399 * 103.00238 * 180.02562 * 11 10 9
13 13 C 1.53006 * 109.47007 * 179.97438 * 12 11 10
14 14 C 1.52999 * 109.46623 * 179.97438 * 13 12 11
15 15 C 1.50706 * 109.46953 * 179.97438 * 14 13 12
16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13
17 17 C 1.37876 * 120.00344 * 180.02562 * 15 14 13
18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14
19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14
20 20 H 1.48498 * 109.46691 * 0.02562 * 19 17 15
21 21 H 1.48500 * 109.46740 * 119.99592 * 19 17 15
22 22 H 1.48497 * 109.47025 * 239.99950 * 19 17 15
23 23 N 1.28628 * 110.58129 * 359.65957 * 9 8 7
24 24 H 1.09006 * 109.47053 * 60.00692 * 1 2 3
25 25 H 1.09007 * 109.47001 * 180.02562 * 1 2 3
26 26 H 1.08998 * 109.47873 * 300.00444 * 1 2 3
27 27 H 1.08997 * 109.47390 * 239.99343 * 2 1 3
28 28 H 1.09005 * 109.46568 * 119.99515 * 2 1 3
29 29 H 1.08000 * 125.58679 * 0.03196 * 7 6 4
30 30 H 1.08997 * 109.46788 * 149.70074 * 10 9 8
31 31 H 1.09001 * 109.47187 * 29.70694 * 10 9 8
32 32 H 1.08993 * 109.47659 * 59.99879 * 12 11 10
33 33 H 1.09000 * 109.46960 * 299.99674 * 12 11 10
34 34 H 1.09000 * 109.47050 * 299.99686 * 13 12 11
35 35 H 1.09001 * 109.46801 * 59.99798 * 13 12 11
36 36 H 1.09000 * 109.47486 * 299.99829 * 14 13 12
37 37 H 1.09001 * 109.47362 * 60.00551 * 14 13 12
38 38 H 0.97000 * 120.00540 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3503 1.5456 0.0005
5 8 4.0908 0.5816 0.0015
6 6 3.9126 2.9050 0.0000
7 6 5.2421 3.1559 0.0010
8 16 5.4839 4.8481 -0.0064
9 6 3.7986 5.1232 -0.0005
10 6 3.1514 6.4842 -0.0013
11 16 2.8903 7.0306 1.7086
12 6 2.1156 8.6579 1.5033
13 6 1.8264 9.2623 2.8788
14 6 1.1735 10.6351 2.7055
15 6 0.8881 11.2302 4.0604
16 1 1.1468 10.6840 4.9554
17 6 0.2966 12.4719 4.1573
18 7 -0.0180 13.1372 3.0673
19 14 -0.0579 13.2092 5.8366
20 1 0.3889 12.2679 6.8947
21 1 0.6729 14.4942 5.9772
22 1 -1.5166 13.4517 5.9728
23 7 3.1583 4.0077 -0.0009
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3635 0.5139 0.8899
27 1 1.8934 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 6.0225 2.4094 0.0018
30 1 2.1921 6.4299 -0.5159
31 1 3.7994 7.1945 -0.5147
32 1 1.1821 8.5490 0.9512
33 1 2.7892 9.3140 0.9521
34 1 1.1525 8.6060 3.4296
35 1 2.7597 9.3712 3.4313
36 1 1.8477 11.2912 2.1549
37 1 0.2403 10.5265 2.1529
38 1 -0.4338 14.0109 3.1354
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000419483357.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:55:57
Heat of formation + Delta-G solvation = -63.051700 kcal
Electronic energy + Delta-G solvation = -19887.629742 eV
Core-core repulsion = 16561.818007 eV
Total energy + Delta-G solvation = -3325.811735 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 315.075 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.07245 -39.63327 -36.92450 -34.49823 -32.88163 -32.05698 -31.95786 -28.90562
-27.50621 -26.45060 -23.64110 -23.24343 -22.05351 -20.43275 -20.20846 -19.38518
-17.26369 -16.96533 -16.79521 -16.54265 -16.04983 -15.43682 -15.05430 -14.72582
-14.55673 -14.30157 -14.07707 -13.75873 -13.23920 -13.15519 -13.00464 -12.52590
-12.34374 -12.27603 -11.92946 -11.77753 -11.76598 -11.08121 -10.97499 -10.91452
-10.85778 -10.56704 -10.20921 -10.17203 -9.87471 -9.83258 -9.41066 -9.25346
-9.09837 -8.39261 -7.56796 -6.04092 -4.06513 -0.04549 0.74858 1.09372
1.17135 1.93424 2.37346 2.67767 2.82679 3.29869 3.37489 3.42188
3.50466 4.28349 4.43841 4.59132 4.59717 4.64728 4.71671 4.80898
4.91193 5.16444 5.29206 5.32096 5.44178 5.45370 5.46706 5.56216
5.66327 6.02919 6.06011 6.50546 6.66741 6.96726 6.97619 7.44550
7.60646 7.72108 7.94805 8.36409 9.00119 9.57972 11.07249
Molecular weight = 315.07amu
Principal moments of inertia in cm(-1)
A = 0.018674 B = 0.002168 C = 0.002010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1499.082758 B =12910.537984 C =13929.335430
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.061 3.939
3 O -0.333 6.333
4 C 0.551 3.449
5 O -0.504 6.504
6 C 0.024 3.976
7 C -0.225 4.225
8 S 0.261 5.739
9 C 0.044 3.956
10 C -0.023 4.023
11 S -0.248 6.248
12 C -0.074 4.074
13 C -0.095 4.095
14 C 0.028 3.972
15 C -0.520 4.520
16 H 0.057 0.943
17 C 0.056 3.944
18 N -0.896 5.896
19 Si 0.893 3.107
20 H -0.272 1.272
21 H -0.284 1.284
22 H -0.284 1.284
23 N -0.412 5.412
24 H 0.068 0.932
25 H 0.080 0.920
26 H 0.070 0.930
27 H 0.071 0.929
28 H 0.071 0.929
29 H 0.194 0.806
30 H 0.114 0.886
31 H 0.105 0.895
32 H 0.080 0.920
33 H 0.080 0.920
34 H 0.059 0.941
35 H 0.058 0.942
36 H 0.018 0.982
37 H 0.018 0.982
38 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.320 -22.964 -10.844 27.052
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.013 4.013
3 O -0.248 6.248
4 C 0.393 3.607
5 O -0.392 6.392
6 C -0.111 4.111
7 C -0.368 4.368
8 S 0.519 5.481
9 C -0.237 4.237
10 C -0.173 4.173
11 S -0.021 6.021
12 C -0.222 4.222
13 C -0.134 4.134
14 C -0.011 4.011
15 C -0.558 4.558
16 H 0.075 0.925
17 C -0.145 4.145
18 N -0.535 5.535
19 Si 0.721 3.279
20 H -0.197 1.197
21 H -0.210 1.210
22 H -0.210 1.210
23 N -0.128 5.128
24 H 0.087 0.913
25 H 0.099 0.901
26 H 0.089 0.911
27 H 0.089 0.911
28 H 0.090 0.910
29 H 0.211 0.789
30 H 0.132 0.868
31 H 0.123 0.877
32 H 0.099 0.901
33 H 0.098 0.902
34 H 0.078 0.922
35 H 0.077 0.923
36 H 0.036 0.964
37 H 0.037 0.963
38 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 9.961 -23.015 -10.005 27.000
hybrid contribution -0.946 -0.002 -0.250 0.978
sum 9.015 -23.017 -10.255 26.762
Atomic orbital electron populations
1.21811 0.92203 1.02988 1.04012 1.23129 0.95786 0.79734 1.02641
1.86712 1.22627 1.32262 1.83227 1.19762 0.81121 0.87322 0.72503
1.90877 1.60764 1.41100 1.46507 1.19217 0.89026 0.91577 1.11271
1.26751 1.00506 1.03210 1.06359 1.83048 1.07254 0.95743 1.62055
1.26272 0.94964 0.97400 1.05031 1.21815 1.04518 0.90922 1.00079
1.87199 1.81891 1.25556 1.07445 1.23720 1.02006 0.91992 1.04475
1.21482 1.01161 0.99257 0.91536 1.19110 0.95569 0.88985 0.97468
1.21254 1.39658 1.02329 0.92603 0.92475 1.25022 0.95666 0.97128
0.96651 1.69966 1.42467 1.13644 1.27420 0.86516 0.77959 0.79097
0.84344 1.19673 1.20992 1.20974 1.66952 1.36620 0.96455 1.12740
0.91286 0.90099 0.91133 0.91095 0.91015 0.78870 0.86786 0.87652
0.90095 0.90172 0.92240 0.92292 0.96359 0.96345 0.93001
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.01 10.29 37.16 0.38 -0.63 16
2 C 0.06 0.53 6.20 37.16 0.23 0.76 16
3 O -0.33 -4.06 10.16 -40.76 -0.41 -4.47 16
4 C 0.55 7.01 7.94 34.33 0.27 7.28 16
5 O -0.50 -6.80 16.50 -19.31 -0.32 -7.12 16
6 C 0.02 0.29 6.71 -84.55 -0.57 -0.28 16
7 C -0.23 -2.10 10.62 29.68 0.32 -1.79 16
8 S 0.26 2.15 22.92 -107.50 -2.46 -0.31 16
9 C 0.04 0.49 6.60 -13.62 -0.09 0.40 16
10 C -0.02 -0.25 6.51 36.01 0.23 -0.01 16
11 S -0.25 -3.61 21.72 -107.50 -2.33 -5.94 16
12 C -0.07 -1.18 5.94 37.16 0.22 -0.96 16
13 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16
14 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16
15 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16
16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16
17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16
18 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16
19 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16
20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
23 N -0.41 -5.43 10.60 -8.53 -0.09 -5.52 16
24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16
26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16
28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
29 H 0.19 1.39 8.03 -52.49 -0.42 0.97 16
30 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16
31 H 0.11 0.89 8.14 -51.92 -0.42 0.47 16
32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
33 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16
34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
LS Contribution 361.46 15.07 5.45 5.45
Total: -1.00 -32.47 361.46 -9.61 -42.07
By element:
Atomic # 1 Polarization: 0.65 SS G_CDS: -5.46 Total: -4.81 kcal
Atomic # 6 Polarization: -10.35 SS G_CDS: 0.31 Total: -10.04 kcal
Atomic # 7 Polarization: -31.93 SS G_CDS: 0.65 Total: -31.28 kcal
Atomic # 8 Polarization: -10.86 SS G_CDS: -0.73 Total: -11.59 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal
Atomic # 16 Polarization: -1.45 SS G_CDS: -4.80 Total: -6.25 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -32.47 -9.61 -42.07 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000419483357.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.977 kcal
(2) G-P(sol) polarization free energy of solvation -32.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.446 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.052 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds