Wall clock time and date at job start Tue Mar 31 2020 10:55:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 O 1.45197 * 109.46838 * 2 1
4 4 C 1.34800 * 116.99816 * 179.97438 * 3 2 1
5 5 O 1.21552 * 120.00017 * 359.97438 * 4 3 2
6 6 C 1.47108 * 120.00154 * 179.97438 * 4 3 2
7 7 C 1.35296 * 123.15883 * 179.97438 * 6 4 3
8 8 S 1.70939 * 108.82058 * 179.77616 * 7 6 4
9 9 C 1.70765 * 91.13910 * 0.33044 * 8 7 6
10 10 C 1.50701 * 124.70929 * 179.91690 * 9 8 7
11 11 S 1.81393 * 109.47519 * 269.70580 * 10 9 8
12 12 C 1.81399 * 103.00238 * 180.02562 * 11 10 9
13 13 C 1.53006 * 109.47007 * 179.97438 * 12 11 10
14 14 C 1.52999 * 109.46623 * 179.97438 * 13 12 11
15 15 C 1.50706 * 109.46953 * 179.97438 * 14 13 12
16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13
17 17 C 1.37876 * 120.00344 * 180.02562 * 15 14 13
18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14
19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14
20 20 H 1.48498 * 109.46691 * 0.02562 * 19 17 15
21 21 H 1.48500 * 109.46740 * 119.99592 * 19 17 15
22 22 H 1.48497 * 109.47025 * 239.99950 * 19 17 15
23 23 N 1.28628 * 110.58129 * 359.65957 * 9 8 7
24 24 H 1.09006 * 109.47053 * 60.00692 * 1 2 3
25 25 H 1.09007 * 109.47001 * 180.02562 * 1 2 3
26 26 H 1.08998 * 109.47873 * 300.00444 * 1 2 3
27 27 H 1.08997 * 109.47390 * 239.99343 * 2 1 3
28 28 H 1.09005 * 109.46568 * 119.99515 * 2 1 3
29 29 H 1.08000 * 125.58679 * 0.03196 * 7 6 4
30 30 H 1.08997 * 109.46788 * 149.70074 * 10 9 8
31 31 H 1.09001 * 109.47187 * 29.70694 * 10 9 8
32 32 H 1.08993 * 109.47659 * 59.99879 * 12 11 10
33 33 H 1.09000 * 109.46960 * 299.99674 * 12 11 10
34 34 H 1.09000 * 109.47050 * 299.99686 * 13 12 11
35 35 H 1.09001 * 109.46801 * 59.99798 * 13 12 11
36 36 H 1.09000 * 109.47486 * 299.99829 * 14 13 12
37 37 H 1.09001 * 109.47362 * 60.00551 * 14 13 12
38 38 H 0.97000 * 120.00540 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3503 1.5456 0.0005
5 8 4.0908 0.5816 0.0015
6 6 3.9126 2.9050 0.0000
7 6 5.2421 3.1559 0.0010
8 16 5.4839 4.8481 -0.0064
9 6 3.7986 5.1232 -0.0005
10 6 3.1514 6.4842 -0.0013
11 16 2.8903 7.0306 1.7086
12 6 2.1156 8.6579 1.5033
13 6 1.8264 9.2623 2.8788
14 6 1.1735 10.6351 2.7055
15 6 0.8881 11.2302 4.0604
16 1 1.1468 10.6840 4.9554
17 6 0.2966 12.4719 4.1573
18 7 -0.0180 13.1372 3.0673
19 14 -0.0579 13.2092 5.8366
20 1 0.3889 12.2679 6.8947
21 1 0.6729 14.4942 5.9772
22 1 -1.5166 13.4517 5.9728
23 7 3.1583 4.0077 -0.0009
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3635 0.5139 0.8899
27 1 1.8934 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 6.0225 2.4094 0.0018
30 1 2.1921 6.4299 -0.5159
31 1 3.7994 7.1945 -0.5147
32 1 1.1821 8.5490 0.9512
33 1 2.7892 9.3140 0.9521
34 1 1.1525 8.6060 3.4296
35 1 2.7597 9.3712 3.4313
36 1 1.8477 11.2912 2.1549
37 1 0.2403 10.5265 2.1529
38 1 -0.4338 14.0109 3.1354
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000419483357.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:55:56
Heat of formation + Delta-G solvation = -81.247847 kcal
Electronic energy + Delta-G solvation = -19888.418787 eV
Core-core repulsion = 16561.818007 eV
Total energy + Delta-G solvation = -3326.600779 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 315.075 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.93375 -40.48021 -37.80930 -36.33850 -34.02726 -33.69880 -32.60813 -29.80782
-29.29963 -27.26136 -25.38889 -24.06170 -22.97282 -22.00623 -21.14858 -20.22537
-18.56688 -18.11112 -17.81092 -17.57575 -17.23578 -16.58237 -16.32210 -16.19348
-15.80701 -15.21191 -14.97740 -14.60486 -14.51546 -14.34558 -13.96482 -13.68963
-13.50399 -13.36922 -13.08575 -13.00996 -12.75177 -12.74723 -12.56929 -12.36483
-11.98180 -11.62971 -11.60757 -11.52280 -11.22293 -11.06582 -10.90637 -10.74176
-10.55142 -10.07173 -8.70575 -8.20108 -6.30381 -0.83378 0.01002 0.18462
0.36963 0.93123 1.40966 1.41771 1.54480 1.55870 1.60623 1.95427
2.42055 2.69595 3.13586 3.45947 3.86509 3.96043 4.00738 4.01219
4.04054 4.08840 4.12648 4.28169 4.39243 4.57489 4.63075 4.79484
4.85572 4.87551 5.00675 5.03524 5.16504 5.29948 5.51634 5.71560
5.84667 6.15279 6.24433 6.58632 6.85671 7.38710 8.91651
Molecular weight = 315.07amu
Principal moments of inertia in cm(-1)
A = 0.018674 B = 0.002168 C = 0.002010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1499.082758 B =12910.537984 C =13929.335430
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.052 3.948
3 O -0.349 6.349
4 C 0.549 3.451
5 O -0.521 6.521
6 C -0.008 4.008
7 C -0.217 4.217
8 S 0.346 5.654
9 C 0.012 3.988
10 C -0.011 4.011
11 S -0.271 6.271
12 C -0.066 4.066
13 C -0.082 4.082
14 C 0.031 3.969
15 C -0.543 4.543
16 H 0.057 0.943
17 C 0.001 3.999
18 N -0.931 5.931
19 Si 0.963 3.037
20 H -0.264 1.264
21 H -0.277 1.277
22 H -0.278 1.278
23 N -0.440 5.440
24 H 0.066 0.934
25 H 0.106 0.894
26 H 0.062 0.938
27 H 0.078 0.922
28 H 0.074 0.926
29 H 0.215 0.785
30 H 0.115 0.885
31 H 0.136 0.864
32 H 0.082 0.918
33 H 0.092 0.908
34 H 0.051 0.949
35 H 0.057 0.943
36 H 0.001 0.999
37 H -0.003 1.003
38 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.601 -23.532 -10.795 27.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.021 4.021
3 O -0.265 6.265
4 C 0.392 3.608
5 O -0.411 6.411
6 C -0.143 4.143
7 C -0.360 4.360
8 S 0.604 5.396
9 C -0.267 4.267
10 C -0.161 4.161
11 S -0.045 6.045
12 C -0.214 4.214
13 C -0.121 4.121
14 C -0.008 4.008
15 C -0.581 4.581
16 H 0.076 0.924
17 C -0.197 4.197
18 N -0.571 5.571
19 Si 0.787 3.213
20 H -0.188 1.188
21 H -0.202 1.202
22 H -0.204 1.204
23 N -0.157 5.157
24 H 0.085 0.915
25 H 0.125 0.875
26 H 0.081 0.919
27 H 0.096 0.904
28 H 0.093 0.907
29 H 0.232 0.768
30 H 0.133 0.867
31 H 0.154 0.846
32 H 0.101 0.899
33 H 0.111 0.889
34 H 0.070 0.930
35 H 0.076 0.924
36 H 0.020 0.980
37 H 0.015 0.985
38 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 11.232 -23.576 -9.952 27.947
hybrid contribution -1.261 0.097 -0.329 1.307
sum 9.971 -23.479 -10.281 27.502
Atomic orbital electron populations
1.21838 0.90659 1.04520 1.03470 1.23417 0.97025 0.78499 1.03132
1.86709 1.22578 1.34193 1.83026 1.19970 0.81191 0.87639 0.72029
1.90847 1.61005 1.41622 1.47665 1.19282 0.90045 0.91183 1.13776
1.27155 1.00077 1.04965 1.03828 1.82754 1.03657 0.93771 1.59429
1.26332 0.97162 0.96886 1.06306 1.21866 1.05603 0.91565 0.97068
1.87192 1.81648 1.24228 1.11403 1.23415 1.02798 0.93329 1.01865
1.21171 1.00300 0.96602 0.94030 1.18985 0.94552 0.91500 0.95781
1.21700 1.39723 1.02870 0.93836 0.92444 1.25929 0.95414 0.97665
1.00666 1.70080 1.43208 1.14139 1.29692 0.85431 0.77917 0.78336
0.79574 1.18844 1.20233 1.20395 1.66899 1.38245 0.97216 1.13337
0.91540 0.87503 0.91884 0.90381 0.90749 0.76830 0.86710 0.84635
0.89885 0.88906 0.93009 0.92377 0.98050 0.98488 0.92716
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.87 10.29 71.98 0.74 -1.13 16
2 C 0.05 0.90 6.20 71.98 0.45 1.35 16
3 O -0.35 -8.65 10.16 -57.12 -0.58 -9.23 16
4 C 0.55 13.96 7.94 70.15 0.56 14.52 16
5 O -0.52 -13.97 16.50 19.67 0.32 -13.65 16
6 C -0.01 -0.19 6.71 40.52 0.27 0.08 16
7 C -0.22 -3.60 10.62 67.14 0.71 -2.89 16
8 S 0.35 4.68 22.92 -56.49 -1.29 3.39 16
9 C 0.01 0.25 6.60 88.58 0.58 0.84 16
10 C -0.01 -0.21 6.51 71.24 0.46 0.25 16
11 S -0.27 -7.57 21.72 -56.49 -1.23 -8.80 16
12 C -0.07 -2.06 5.94 71.98 0.43 -1.63 16
13 C -0.08 -3.30 5.16 30.60 0.16 -3.15 16
14 C 0.03 1.57 4.97 29.85 0.15 1.72 16
15 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16
16 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16
17 C 0.00 0.07 5.46 84.65 0.46 0.53 16
18 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16
19 Si 0.96 44.05 29.54 68.60 2.03 46.07 16
20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16
21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16
22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16
23 N -0.44 -11.29 10.60 -180.90 -1.92 -13.21 16
24 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16
25 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16
26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
28 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16
29 H 0.21 2.51 8.03 -2.91 -0.02 2.49 16
30 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16
31 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16
32 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16
33 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16
34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16
35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
36 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16
37 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16
38 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16
Total: -1.00 -70.90 361.46 3.88 -67.02
By element:
Atomic # 1 Polarization: 2.76 SS G_CDS: 1.05 Total: 3.81 kcal
Atomic # 6 Polarization: -25.16 SS G_CDS: 5.21 Total: -19.96 kcal
Atomic # 7 Polarization: -67.03 SS G_CDS: -1.63 Total: -68.66 kcal
Atomic # 8 Polarization: -22.62 SS G_CDS: -0.26 Total: -22.88 kcal
Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal
Atomic # 16 Polarization: -2.89 SS G_CDS: -2.52 Total: -5.41 kcal
Total: -70.90 3.88 -67.02 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000419483357.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.226 kcal
(2) G-P(sol) polarization free energy of solvation -70.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.123 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.248 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds