Wall clock time and date at job start Tue Mar 31 2020 11:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86799 * 119.99722 * 2 1 4 4 H 1.48495 * 109.47334 * 240.00279 * 3 2 1 5 5 H 1.48499 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46950 * 119.99964 * 3 2 1 7 7 C 1.38796 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99504 * 179.97438 * 7 2 1 9 9 S 1.76191 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00056 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47141 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00027 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99939 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99890 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47212 * 325.00087 * 14 13 11 16 16 C 1.53004 * 109.47047 * 84.99666 * 14 13 11 17 17 C 1.52997 * 109.47236 * 295.00151 * 16 14 13 18 18 F 1.39904 * 109.46820 * 184.99787 * 17 16 14 19 19 F 1.39901 * 109.47234 * 65.00191 * 17 16 14 20 20 C 1.50700 * 109.47150 * 204.99801 * 14 13 11 21 21 C 1.38232 * 119.99959 * 319.72812 * 20 14 13 22 22 C 1.38234 * 120.00017 * 179.80585 * 21 20 14 23 23 C 1.38233 * 120.00170 * 0.40434 * 22 21 20 24 24 C 1.38241 * 119.99683 * 359.84734 * 23 22 21 25 25 C 1.38236 * 120.00164 * 359.96423 * 24 23 22 26 26 H 0.96994 * 120.00164 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47461 * 59.99967 * 10 9 7 28 28 H 1.08998 * 109.46955 * 300.00063 * 10 9 7 29 29 H 0.96996 * 119.99769 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.46917 * 174.99584 * 16 14 13 31 31 H 1.09004 * 109.46741 * 55.00262 * 16 14 13 32 32 H 1.09002 * 109.47153 * 304.99767 * 17 16 14 33 33 H 1.07998 * 119.99937 * 359.97438 * 21 20 14 34 34 H 1.08004 * 120.00258 * 180.22740 * 22 21 20 35 35 H 1.08000 * 120.00463 * 179.82833 * 23 22 21 36 36 H 1.07997 * 120.00140 * 179.97438 * 24 23 22 37 37 H 1.07998 * 120.00444 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6966 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7914 -5.5023 -0.0011 13 7 2.8444 -6.3431 -0.0008 14 6 2.3307 -7.7150 -0.0008 15 1 1.4147 -7.7601 0.5883 16 6 2.0346 -8.1487 -1.4379 17 6 0.9012 -7.2921 -2.0059 18 9 0.5533 -7.7622 -3.2768 19 9 1.3244 -5.9619 -2.1004 20 6 3.3603 -8.6370 0.6001 21 6 4.6993 -8.4648 0.3032 22 6 5.6441 -9.3079 0.8575 23 6 5.2492 -10.3285 1.7021 24 6 3.9095 -10.5039 1.9949 25 6 2.9651 -9.6583 1.4436 26 1 -0.4850 0.8400 0.0004 27 1 3.1247 -3.7312 0.8894 28 1 3.1246 -3.7312 -0.8905 29 1 3.8011 -6.1834 -0.0004 30 1 1.7372 -9.1973 -1.4470 31 1 2.9286 -8.0193 -2.0480 32 1 0.0352 -7.3519 -1.3467 33 1 5.0076 -7.6698 -0.3597 34 1 6.6907 -9.1712 0.6285 35 1 5.9870 -10.9890 2.1331 36 1 3.6008 -11.3014 2.6544 37 1 1.9185 -9.7950 1.6726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421697321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:14 Heat of formation + Delta-G solvation = -112.323067 kcal Electronic energy + Delta-G solvation = -23738.404360 eV Core-core repulsion = 19856.615671 eV Total energy + Delta-G solvation = -3881.788689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.65921 -46.66387 -40.17117 -38.77077 -35.68745 -32.39557 -32.22346 -31.19574 -30.73951 -28.88799 -25.64546 -25.32416 -23.07715 -22.60476 -21.25662 -20.17538 -18.09687 -17.43804 -17.34136 -16.89601 -16.37188 -16.31220 -15.65927 -15.30827 -14.93945 -14.78201 -14.70245 -13.94506 -13.75508 -13.72284 -13.50353 -13.34957 -13.15007 -12.82007 -12.72618 -12.48529 -12.30744 -12.03062 -11.61684 -11.37886 -11.29724 -11.01192 -11.01024 -10.74705 -10.64133 -9.78890 -9.44183 -9.25086 -9.10802 -9.02796 -8.94902 -8.18898 -6.44079 -6.18123 -3.87498 0.96596 1.07116 3.01655 3.14642 3.25790 3.28917 3.31808 3.44114 3.71732 3.83227 4.24105 4.39923 4.47234 4.52657 4.64187 4.68786 4.76079 4.84032 5.05660 5.14422 5.16855 5.19848 5.32281 5.33348 5.56368 5.59990 5.65709 5.69901 5.81594 5.94794 6.11355 6.18476 6.18786 6.21032 6.57918 6.64527 7.62415 7.66430 8.38383 8.63220 9.27125 10.89238 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.003437 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.407788 B = 8143.556654 C = 9215.658041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.054 6.054 10 C -0.151 4.151 11 C 0.550 3.450 12 O -0.523 6.523 13 N -0.738 5.738 14 C 0.191 3.809 15 H 0.103 0.897 16 C -0.178 4.178 17 C 0.266 3.734 18 F -0.215 7.215 19 F -0.185 7.185 20 C -0.088 4.088 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.106 4.106 26 H 0.268 0.732 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.976 -22.505 1.282 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.089 0.911 9 S 0.172 5.828 10 C -0.302 4.302 11 C 0.338 3.662 12 O -0.397 6.397 13 N -0.393 5.393 14 C 0.085 3.915 15 H 0.121 0.879 16 C -0.217 4.217 17 C 0.213 3.787 18 F -0.197 7.197 19 F -0.167 7.167 20 C -0.089 4.089 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.138 4.138 24 C -0.135 4.135 25 C -0.124 4.124 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.233 0.767 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.794 -22.680 1.246 24.014 hybrid contribution 2.565 1.387 -0.152 2.920 sum 10.359 -21.293 1.094 23.704 Atomic orbital electron populations 1.70007 1.05928 1.27502 1.46920 1.24976 0.95011 0.98960 0.94593 0.86241 0.79250 0.81330 0.78777 1.19955 1.20838 1.19973 1.22846 0.94894 0.91848 1.58881 0.91066 1.85349 1.04744 0.95997 1.96668 1.23492 1.06617 0.95340 1.04702 1.20106 0.86448 0.86124 0.73497 1.90634 1.15534 1.85383 1.48197 1.46175 1.10184 1.04399 1.78531 1.19571 0.96636 0.81103 0.94173 0.87908 1.23147 0.99795 1.01085 0.97722 1.21812 0.98146 0.77511 0.81277 1.92952 1.93428 1.88539 1.44758 1.93004 1.91315 1.36306 1.96030 1.19805 0.94094 0.96728 0.98232 1.20987 0.92454 0.99535 0.99934 1.21153 0.99547 0.95365 0.97381 1.21208 0.96142 0.98144 0.98265 1.21158 0.93150 0.99397 0.99833 1.21049 1.00057 0.94777 0.96518 0.92175 0.89497 0.89293 0.76654 0.88112 0.89257 0.86829 0.85885 0.85839 0.86029 0.85814 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.05 -1.48 20.57 -107.50 -2.21 -3.69 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.55 9.92 5.35 -10.98 -0.06 9.86 16 12 O -0.52 -10.93 12.37 5.56 0.07 -10.86 16 13 N -0.74 -9.52 4.79 -54.93 -0.26 -9.79 16 14 C 0.19 2.06 2.46 -69.08 -0.17 1.89 16 15 H 0.10 1.20 7.44 -51.93 -0.39 0.81 16 16 C -0.18 -1.83 5.16 -26.73 -0.14 -1.97 16 17 C 0.27 3.72 4.47 37.16 0.17 3.88 16 18 F -0.22 -3.15 17.34 2.25 0.04 -3.11 16 19 F -0.19 -3.38 12.37 2.25 0.03 -3.35 16 20 C -0.09 -0.80 4.95 -104.62 -0.52 -1.32 16 21 C -0.11 -0.93 9.05 -39.58 -0.36 -1.29 16 22 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 23 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 24 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 25 C -0.11 -0.87 9.67 -39.58 -0.38 -1.26 16 26 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 28 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 29 H 0.40 4.23 6.89 -40.82 -0.28 3.95 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.11 1.55 7.57 -51.93 -0.39 1.15 16 33 H 0.12 0.90 6.93 -52.49 -0.36 0.54 16 34 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 35 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.87 8.04 -52.49 -0.42 0.45 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -34.77 333.65 -8.18 -42.95 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.35 Total: 1.86 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -2.23 Total: -9.97 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.47 Total: -35.45 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.07 Total: -6.46 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.77 -8.18 -42.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421697321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.369 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds