Wall clock time and date at job start Tue Mar 31 2020 11:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86799 * 119.99722 * 2 1 4 4 H 1.48495 * 109.47334 * 240.00279 * 3 2 1 5 5 H 1.48499 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46950 * 119.99964 * 3 2 1 7 7 C 1.38796 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99504 * 179.97438 * 7 2 1 9 9 S 1.76191 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00056 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47141 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00027 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99939 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99890 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47212 * 325.00087 * 14 13 11 16 16 C 1.53004 * 109.47047 * 84.99666 * 14 13 11 17 17 C 1.52997 * 109.47236 * 295.00151 * 16 14 13 18 18 F 1.39904 * 109.46820 * 184.99787 * 17 16 14 19 19 F 1.39901 * 109.47234 * 65.00191 * 17 16 14 20 20 C 1.50700 * 109.47150 * 204.99801 * 14 13 11 21 21 C 1.38232 * 119.99959 * 319.72812 * 20 14 13 22 22 C 1.38234 * 120.00017 * 179.80585 * 21 20 14 23 23 C 1.38233 * 120.00170 * 0.40434 * 22 21 20 24 24 C 1.38241 * 119.99683 * 359.84734 * 23 22 21 25 25 C 1.38236 * 120.00164 * 359.96423 * 24 23 22 26 26 H 0.96994 * 120.00164 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47461 * 59.99967 * 10 9 7 28 28 H 1.08998 * 109.46955 * 300.00063 * 10 9 7 29 29 H 0.96996 * 119.99769 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.46917 * 174.99584 * 16 14 13 31 31 H 1.09004 * 109.46741 * 55.00262 * 16 14 13 32 32 H 1.09002 * 109.47153 * 304.99767 * 17 16 14 33 33 H 1.07998 * 119.99937 * 359.97438 * 21 20 14 34 34 H 1.08004 * 120.00258 * 180.22740 * 22 21 20 35 35 H 1.08000 * 120.00463 * 179.82833 * 23 22 21 36 36 H 1.07997 * 120.00140 * 179.97438 * 24 23 22 37 37 H 1.07998 * 120.00444 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6966 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7914 -5.5023 -0.0011 13 7 2.8444 -6.3431 -0.0008 14 6 2.3307 -7.7150 -0.0008 15 1 1.4147 -7.7601 0.5883 16 6 2.0346 -8.1487 -1.4379 17 6 0.9012 -7.2921 -2.0059 18 9 0.5533 -7.7622 -3.2768 19 9 1.3244 -5.9619 -2.1004 20 6 3.3603 -8.6370 0.6001 21 6 4.6993 -8.4648 0.3032 22 6 5.6441 -9.3079 0.8575 23 6 5.2492 -10.3285 1.7021 24 6 3.9095 -10.5039 1.9949 25 6 2.9651 -9.6583 1.4436 26 1 -0.4850 0.8400 0.0004 27 1 3.1247 -3.7312 0.8894 28 1 3.1246 -3.7312 -0.8905 29 1 3.8011 -6.1834 -0.0004 30 1 1.7372 -9.1973 -1.4470 31 1 2.9286 -8.0193 -2.0480 32 1 0.0352 -7.3519 -1.3467 33 1 5.0076 -7.6698 -0.3597 34 1 6.6907 -9.1712 0.6285 35 1 5.9870 -10.9890 2.1331 36 1 3.6008 -11.3014 2.6544 37 1 1.9185 -9.7950 1.6726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421697321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:13 Heat of formation + Delta-G solvation = -133.989728 kcal Electronic energy + Delta-G solvation = -23739.343897 eV Core-core repulsion = 19856.615671 eV Total energy + Delta-G solvation = -3882.728225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.86061 -47.89636 -41.10682 -39.80220 -36.71799 -34.57473 -33.39648 -31.78255 -31.46451 -30.37580 -27.67008 -26.43990 -23.71442 -23.52477 -22.15079 -21.32625 -19.88285 -18.62124 -18.51015 -17.98947 -17.67802 -17.26320 -16.87239 -16.71595 -16.36508 -15.96245 -15.89473 -15.29329 -14.93033 -14.72509 -14.47913 -14.35145 -14.25905 -14.21070 -14.14846 -13.47883 -13.31766 -13.15539 -13.08875 -12.87059 -12.71410 -12.61994 -12.17117 -11.90689 -11.75469 -11.61416 -11.12077 -10.87739 -10.25322 -10.19938 -9.81234 -9.69660 -8.62381 -8.33584 -6.10101 0.35788 0.50803 1.28334 1.43583 1.47231 1.57509 1.73111 2.25683 2.31286 2.75318 2.94976 3.00156 3.33358 3.42852 3.55199 3.66955 3.87984 3.94691 4.03329 4.15366 4.28815 4.30362 4.33113 4.38645 4.51880 4.61395 4.63876 4.72773 4.87382 5.04960 5.15702 5.37747 5.41997 5.56906 5.64522 5.67015 6.09378 6.20184 6.49143 7.07551 7.29257 8.75299 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.003437 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.407788 B = 8143.556654 C = 9215.658041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.550 4.550 8 H 0.080 0.920 9 S -0.140 6.140 10 C -0.130 4.130 11 C 0.553 3.447 12 O -0.557 6.557 13 N -0.717 5.717 14 C 0.194 3.806 15 H 0.093 0.907 16 C -0.164 4.164 17 C 0.256 3.744 18 F -0.220 7.220 19 F -0.212 7.212 20 C -0.099 4.099 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.115 4.115 26 H 0.271 0.729 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.412 0.588 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.628 -23.733 1.734 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.698 4.698 8 H 0.098 0.902 9 S 0.088 5.912 10 C -0.281 4.281 11 C 0.340 3.660 12 O -0.435 6.435 13 N -0.372 5.372 14 C 0.089 3.911 15 H 0.111 0.889 16 C -0.202 4.202 17 C 0.202 3.798 18 F -0.202 7.202 19 F -0.193 7.193 20 C -0.099 4.099 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.133 4.133 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.249 0.751 30 H 0.147 0.853 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.490 -23.952 1.698 26.203 hybrid contribution 1.785 1.596 -0.276 2.411 sum 12.275 -22.355 1.422 25.544 Atomic orbital electron populations 1.70173 1.07923 1.28629 1.48021 1.26105 0.95960 1.03241 0.93770 0.85029 0.77847 0.75812 0.79466 1.18801 1.20324 1.18595 1.23201 0.95333 0.92392 1.58876 0.90193 1.85469 1.10132 0.98676 1.96969 1.23345 1.03653 0.95112 1.06033 1.19688 0.86333 0.86195 0.73737 1.90625 1.17005 1.85694 1.50139 1.45926 1.10281 1.04387 1.76565 1.19641 0.96959 0.79863 0.94596 0.88883 1.23085 0.98531 1.01679 0.96948 1.22186 0.99736 0.76784 0.81051 1.92934 1.93636 1.88415 1.45207 1.92944 1.91594 1.38661 1.96136 1.19629 0.93871 0.97035 0.99385 1.21144 0.92290 1.00083 1.00267 1.21428 1.00365 0.95144 0.97148 1.21552 0.96603 0.98118 0.97694 1.21442 0.93191 0.99625 0.99828 1.21239 1.00923 0.94778 0.96381 0.92011 0.87754 0.88151 0.75082 0.85281 0.88451 0.87108 0.85148 0.84069 0.83960 0.83936 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.55 -32.00 9.50 67.95 0.65 -31.36 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.14 -7.85 20.57 -56.49 -1.16 -9.01 16 10 C -0.13 -5.29 6.16 71.24 0.44 -4.86 16 11 C 0.55 19.94 5.35 87.66 0.47 20.41 16 12 O -0.56 -23.89 12.37 -3.01 -0.04 -23.93 16 13 N -0.72 -17.68 4.79 -446.09 -2.14 -19.81 16 14 C 0.19 3.93 2.46 44.25 0.11 4.04 16 15 H 0.09 2.12 7.44 -2.39 -0.02 2.10 16 16 C -0.16 -3.12 5.16 30.59 0.16 -2.96 16 17 C 0.26 7.13 4.47 71.98 0.32 7.45 16 18 F -0.22 -6.41 17.34 44.97 0.78 -5.63 16 19 F -0.21 -7.85 12.37 44.97 0.56 -7.30 16 20 C -0.10 -1.59 4.95 -19.87 -0.10 -1.69 16 21 C -0.12 -1.70 9.05 22.27 0.20 -1.50 16 22 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16 23 C -0.12 -1.38 10.05 22.27 0.22 -1.15 16 24 C -0.12 -1.48 10.05 22.27 0.22 -1.26 16 25 C -0.11 -1.65 9.67 22.27 0.22 -1.44 16 26 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.10 3.84 8.14 -2.40 -0.02 3.82 16 28 H 0.10 3.83 8.14 -2.40 -0.02 3.81 16 29 H 0.41 7.96 6.89 -92.71 -0.64 7.32 16 30 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 3.10 7.57 -2.39 -0.02 3.09 16 33 H 0.13 1.57 6.93 -2.91 -0.02 1.55 16 34 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.14 0.97 8.06 -2.91 -0.02 0.94 16 36 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.13 1.62 8.04 -2.91 -0.02 1.60 16 Total: -1.00 -77.33 333.65 4.37 -72.96 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.46 Total: 17.14 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 3.60 Total: -14.31 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -1.85 Total: -76.18 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.93 kcal Atomic # 9 Polarization: -14.27 SS G_CDS: 1.34 Total: -12.93 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.01 kcal Total: -77.33 4.37 -72.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421697321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.032 kcal (2) G-P(sol) polarization free energy of solvation -77.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds