Wall clock time and date at job start Tue Mar 31 2020 11:17:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31637 * 1
3 3 Si 1.86799 * 119.99722 * 2 1
4 4 H 1.48495 * 109.47334 * 240.00279 * 3 2 1
5 5 H 1.48499 * 109.47094 * 0.02562 * 3 2 1
6 6 H 1.48503 * 109.46950 * 119.99964 * 3 2 1
7 7 C 1.38796 * 119.99985 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99504 * 179.97438 * 7 2 1
9 9 S 1.76191 * 120.00261 * 359.97438 * 7 2 1
10 10 C 1.80998 * 100.00056 * 180.02562 * 9 7 2
11 11 C 1.50708 * 109.47141 * 180.02562 * 10 9 7
12 12 O 1.21275 * 120.00027 * 359.97438 * 11 10 9
13 13 N 1.34779 * 119.99939 * 180.02562 * 11 10 9
14 14 C 1.46498 * 119.99890 * 179.97438 * 13 11 10
15 15 H 1.08997 * 109.47212 * 325.00087 * 14 13 11
16 16 C 1.53004 * 109.47047 * 84.99666 * 14 13 11
17 17 C 1.52997 * 109.47236 * 295.00151 * 16 14 13
18 18 F 1.39904 * 109.46820 * 184.99787 * 17 16 14
19 19 F 1.39901 * 109.47234 * 65.00191 * 17 16 14
20 20 C 1.50700 * 109.47150 * 204.99801 * 14 13 11
21 21 C 1.38232 * 119.99959 * 319.72812 * 20 14 13
22 22 C 1.38234 * 120.00017 * 179.80585 * 21 20 14
23 23 C 1.38233 * 120.00170 * 0.40434 * 22 21 20
24 24 C 1.38241 * 119.99683 * 359.84734 * 23 22 21
25 25 C 1.38236 * 120.00164 * 359.96423 * 24 23 22
26 26 H 0.96994 * 120.00164 * 359.97438 * 1 2 3
27 27 H 1.09000 * 109.47461 * 59.99967 * 10 9 7
28 28 H 1.08998 * 109.46955 * 300.00063 * 10 9 7
29 29 H 0.96996 * 119.99769 * 359.97438 * 13 11 10
30 30 H 1.09001 * 109.46917 * 174.99584 * 16 14 13
31 31 H 1.09004 * 109.46741 * 55.00262 * 16 14 13
32 32 H 1.09002 * 109.47153 * 304.99767 * 17 16 14
33 33 H 1.07998 * 119.99937 * 359.97438 * 21 20 14
34 34 H 1.08004 * 120.00258 * 180.22740 * 22 21 20
35 35 H 1.08000 * 120.00463 * 179.82833 * 23 22 21
36 36 H 1.07997 * 120.00140 * 179.97438 * 24 23 22
37 37 H 1.07998 * 120.00444 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3164 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.1040 1.6966 -1.2125
5 1 1.2852 2.7464 0.0006
6 1 3.1040 1.6964 1.2125
7 6 2.0103 -1.2020 -0.0005
8 1 3.0904 -1.2019 -0.0010
9 16 1.1295 -2.7279 -0.0005
10 6 2.5160 -3.8913 -0.0005
11 6 1.9876 -5.3027 -0.0012
12 8 0.7914 -5.5023 -0.0011
13 7 2.8444 -6.3431 -0.0008
14 6 2.3307 -7.7150 -0.0008
15 1 1.4147 -7.7601 0.5883
16 6 2.0346 -8.1487 -1.4379
17 6 0.9012 -7.2921 -2.0059
18 9 0.5533 -7.7622 -3.2768
19 9 1.3244 -5.9619 -2.1004
20 6 3.3603 -8.6370 0.6001
21 6 4.6993 -8.4648 0.3032
22 6 5.6441 -9.3079 0.8575
23 6 5.2492 -10.3285 1.7021
24 6 3.9095 -10.5039 1.9949
25 6 2.9651 -9.6583 1.4436
26 1 -0.4850 0.8400 0.0004
27 1 3.1247 -3.7312 0.8894
28 1 3.1246 -3.7312 -0.8905
29 1 3.8011 -6.1834 -0.0004
30 1 1.7372 -9.1973 -1.4470
31 1 2.9286 -8.0193 -2.0480
32 1 0.0352 -7.3519 -1.3467
33 1 5.0076 -7.6698 -0.3597
34 1 6.6907 -9.1712 0.6285
35 1 5.9870 -10.9890 2.1331
36 1 3.6008 -11.3014 2.6544
37 1 1.9185 -9.7950 1.6726
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000421697321.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:17:13
Heat of formation + Delta-G solvation = -133.989728 kcal
Electronic energy + Delta-G solvation = -23739.343897 eV
Core-core repulsion = 19856.615671 eV
Total energy + Delta-G solvation = -3882.728225 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.085 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-49.86061 -47.89636 -41.10682 -39.80220 -36.71799 -34.57473 -33.39648 -31.78255
-31.46451 -30.37580 -27.67008 -26.43990 -23.71442 -23.52477 -22.15079 -21.32625
-19.88285 -18.62124 -18.51015 -17.98947 -17.67802 -17.26320 -16.87239 -16.71595
-16.36508 -15.96245 -15.89473 -15.29329 -14.93033 -14.72509 -14.47913 -14.35145
-14.25905 -14.21070 -14.14846 -13.47883 -13.31766 -13.15539 -13.08875 -12.87059
-12.71410 -12.61994 -12.17117 -11.90689 -11.75469 -11.61416 -11.12077 -10.87739
-10.25322 -10.19938 -9.81234 -9.69660 -8.62381 -8.33584 -6.10101 0.35788
0.50803 1.28334 1.43583 1.47231 1.57509 1.73111 2.25683 2.31286
2.75318 2.94976 3.00156 3.33358 3.42852 3.55199 3.66955 3.87984
3.94691 4.03329 4.15366 4.28815 4.30362 4.33113 4.38645 4.51880
4.61395 4.63876 4.72773 4.87382 5.04960 5.15702 5.37747 5.41997
5.56906 5.64522 5.67015 6.09378 6.20184 6.49143 7.07551 7.29257
8.75299
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.016982 B = 0.003437 C = 0.003038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1648.407788 B = 8143.556654 C = 9215.658041
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.014 3.986
3 Si 0.997 3.003
4 H -0.263 1.263
5 H -0.278 1.278
6 H -0.261 1.261
7 C -0.550 4.550
8 H 0.080 0.920
9 S -0.140 6.140
10 C -0.130 4.130
11 C 0.553 3.447
12 O -0.557 6.557
13 N -0.717 5.717
14 C 0.194 3.806
15 H 0.093 0.907
16 C -0.164 4.164
17 C 0.256 3.744
18 F -0.220 7.220
19 F -0.212 7.212
20 C -0.099 4.099
21 C -0.120 4.120
22 C -0.123 4.123
23 C -0.122 4.122
24 C -0.123 4.123
25 C -0.115 4.115
26 H 0.271 0.729
27 H 0.104 0.896
28 H 0.100 0.900
29 H 0.412 0.588
30 H 0.129 0.871
31 H 0.097 0.903
32 H 0.111 0.889
33 H 0.131 0.869
34 H 0.141 0.859
35 H 0.143 0.857
36 H 0.143 0.857
37 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.628 -23.733 1.734 26.939
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.191 4.191
3 Si 0.818 3.182
4 H -0.188 1.188
5 H -0.203 1.203
6 H -0.186 1.186
7 C -0.698 4.698
8 H 0.098 0.902
9 S 0.088 5.912
10 C -0.281 4.281
11 C 0.340 3.660
12 O -0.435 6.435
13 N -0.372 5.372
14 C 0.089 3.911
15 H 0.111 0.889
16 C -0.202 4.202
17 C 0.202 3.798
18 F -0.202 7.202
19 F -0.193 7.193
20 C -0.099 4.099
21 C -0.138 4.138
22 C -0.141 4.141
23 C -0.140 4.140
24 C -0.141 4.141
25 C -0.133 4.133
26 H 0.080 0.920
27 H 0.122 0.878
28 H 0.118 0.882
29 H 0.249 0.751
30 H 0.147 0.853
31 H 0.115 0.885
32 H 0.129 0.871
33 H 0.149 0.851
34 H 0.159 0.841
35 H 0.160 0.840
36 H 0.161 0.839
37 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 10.490 -23.952 1.698 26.203
hybrid contribution 1.785 1.596 -0.276 2.411
sum 12.275 -22.355 1.422 25.544
Atomic orbital electron populations
1.70173 1.07923 1.28629 1.48021 1.26105 0.95960 1.03241 0.93770
0.85029 0.77847 0.75812 0.79466 1.18801 1.20324 1.18595 1.23201
0.95333 0.92392 1.58876 0.90193 1.85469 1.10132 0.98676 1.96969
1.23345 1.03653 0.95112 1.06033 1.19688 0.86333 0.86195 0.73737
1.90625 1.17005 1.85694 1.50139 1.45926 1.10281 1.04387 1.76565
1.19641 0.96959 0.79863 0.94596 0.88883 1.23085 0.98531 1.01679
0.96948 1.22186 0.99736 0.76784 0.81051 1.92934 1.93636 1.88415
1.45207 1.92944 1.91594 1.38661 1.96136 1.19629 0.93871 0.97035
0.99385 1.21144 0.92290 1.00083 1.00267 1.21428 1.00365 0.95144
0.97148 1.21552 0.96603 0.98118 0.97694 1.21442 0.93191 0.99625
0.99828 1.21239 1.00923 0.94778 0.96381 0.92011 0.87754 0.88151
0.75082 0.85281 0.88451 0.87108 0.85148 0.84069 0.83960 0.83936
0.84760
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16
2 C 0.01 0.81 5.49 84.86 0.47 1.28 16
3 Si 1.00 44.22 29.55 68.60 2.03 46.25 16
4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16
5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16
6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16
7 C -0.55 -32.00 9.50 67.95 0.65 -31.36 16
8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16
9 S -0.14 -7.85 20.57 -56.49 -1.16 -9.01 16
10 C -0.13 -5.29 6.16 71.24 0.44 -4.86 16
11 C 0.55 19.94 5.35 87.66 0.47 20.41 16
12 O -0.56 -23.89 12.37 -3.01 -0.04 -23.93 16
13 N -0.72 -17.68 4.79 -446.09 -2.14 -19.81 16
14 C 0.19 3.93 2.46 44.25 0.11 4.04 16
15 H 0.09 2.12 7.44 -2.39 -0.02 2.10 16
16 C -0.16 -3.12 5.16 30.59 0.16 -2.96 16
17 C 0.26 7.13 4.47 71.98 0.32 7.45 16
18 F -0.22 -6.41 17.34 44.97 0.78 -5.63 16
19 F -0.21 -7.85 12.37 44.97 0.56 -7.30 16
20 C -0.10 -1.59 4.95 -19.87 -0.10 -1.69 16
21 C -0.12 -1.70 9.05 22.27 0.20 -1.50 16
22 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16
23 C -0.12 -1.38 10.05 22.27 0.22 -1.15 16
24 C -0.12 -1.48 10.05 22.27 0.22 -1.26 16
25 C -0.11 -1.65 9.67 22.27 0.22 -1.44 16
26 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16
27 H 0.10 3.84 8.14 -2.40 -0.02 3.82 16
28 H 0.10 3.83 8.14 -2.40 -0.02 3.81 16
29 H 0.41 7.96 6.89 -92.71 -0.64 7.32 16
30 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16
31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16
32 H 0.11 3.10 7.57 -2.39 -0.02 3.09 16
33 H 0.13 1.57 6.93 -2.91 -0.02 1.55 16
34 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16
35 H 0.14 0.97 8.06 -2.91 -0.02 0.94 16
36 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16
37 H 0.13 1.62 8.04 -2.91 -0.02 1.60 16
Total: -1.00 -77.33 333.65 4.37 -72.96
By element:
Atomic # 1 Polarization: 16.68 SS G_CDS: 0.46 Total: 17.14 kcal
Atomic # 6 Polarization: -17.90 SS G_CDS: 3.60 Total: -14.31 kcal
Atomic # 7 Polarization: -74.32 SS G_CDS: -1.85 Total: -76.18 kcal
Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.93 kcal
Atomic # 9 Polarization: -14.27 SS G_CDS: 1.34 Total: -12.93 kcal
Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal
Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.01 kcal
Total: -77.33 4.37 -72.96 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000421697321.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.032 kcal
(2) G-P(sol) polarization free energy of solvation -77.329 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.361 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.958 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.990 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds