Wall clock time and date at job start Tue Mar 31 2020 11:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48501 * 109.46894 * 239.99720 * 3 2 1 5 5 H 1.48504 * 109.47200 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47180 * 120.00189 * 3 2 1 7 7 C 1.37879 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99842 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47225 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00444 * 275.27579 * 10 9 7 12 12 C 1.52997 * 109.47398 * 274.72686 * 11 10 9 13 13 C 1.53005 * 117.49989 * 243.61967 * 12 11 10 14 14 C 1.52997 * 60.00061 * 252.50806 * 13 12 11 15 15 S 1.65608 * 119.99583 * 95.00259 * 10 9 7 16 16 O 1.42105 * 104.27567 * 206.07049 * 15 10 9 17 17 O 1.42099 * 104.27801 * 333.93019 * 15 10 9 18 18 C 1.81397 * 104.44917 * 90.00089 * 15 10 9 19 19 C 1.53002 * 109.47293 * 179.97438 * 18 15 10 20 20 C 1.52999 * 109.47402 * 179.97438 * 19 18 15 21 21 F 1.39908 * 109.46678 * 60.00340 * 20 19 18 22 22 F 1.39896 * 109.47231 * 179.97438 * 20 19 18 23 23 F 1.39902 * 109.47451 * 300.00608 * 20 19 18 24 24 H 0.97002 * 119.99268 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47181 * 59.99732 * 9 7 2 26 26 H 1.09001 * 109.47277 * 300.00727 * 9 7 2 27 27 H 1.09004 * 109.46868 * 34.72321 * 11 10 9 28 28 H 1.09004 * 109.47439 * 154.72444 * 11 10 9 29 29 H 1.08997 * 115.54840 * 29.32534 * 12 11 10 30 30 H 1.09002 * 117.49693 * 0.02562 * 13 12 11 31 31 H 1.09000 * 117.49634 * 145.01940 * 13 12 11 32 32 H 1.09001 * 117.50089 * 252.51283 * 14 13 12 33 33 H 1.09003 * 117.50184 * 107.48619 * 14 13 12 34 34 H 1.09001 * 109.47492 * 299.99928 * 18 15 10 35 35 H 1.09001 * 109.47146 * 59.99771 * 18 15 10 36 36 H 1.09001 * 109.47069 * 300.00526 * 19 18 15 37 37 H 1.09001 * 109.46935 * 59.99981 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.7666 -4.0943 -1.2620 12 6 1.8120 -5.1104 -1.8920 13 6 2.3144 -6.5466 -2.0527 14 6 2.1663 -5.6462 -3.2807 15 16 2.6470 -4.3226 1.4302 16 8 3.9359 -4.8606 1.1685 17 8 2.4626 -3.3015 2.4011 18 6 1.4381 -5.6538 1.6691 19 6 1.7457 -6.3944 2.9721 20 6 0.7257 -7.5168 3.1740 21 9 0.7985 -8.4114 2.1008 22 9 1.0073 -8.1942 4.3651 23 9 -0.5610 -6.9714 3.2400 24 1 -0.4849 0.8401 -0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 2.9034 -3.2538 -1.9425 28 1 3.7294 -4.5691 -1.0728 29 1 0.7561 -4.9691 -1.6614 30 1 3.3250 -6.7676 -1.7091 31 1 1.5890 -7.3505 -1.9276 32 1 1.3435 -5.8576 -3.9636 33 1 3.0796 -5.2746 -3.7455 34 1 0.4354 -5.2294 1.7200 35 1 1.4955 -6.3510 0.8331 36 1 2.7483 -6.8189 2.9208 37 1 1.6886 -5.6974 3.8083 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439175813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:56 Heat of formation + Delta-G solvation = -206.900812 kcal Electronic energy + Delta-G solvation = -25511.482879 eV Core-core repulsion = 21194.823767 eV Total energy + Delta-G solvation = -4316.659112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.26337 -47.77206 -47.72046 -37.74690 -36.64254 -35.49482 -34.90304 -34.24301 -32.39781 -27.87456 -26.91536 -25.47323 -22.85009 -22.47433 -22.20619 -20.32255 -18.87030 -18.73427 -18.21500 -17.85413 -16.85322 -16.58183 -15.99839 -15.69704 -15.30442 -14.84824 -14.63694 -14.47857 -14.21559 -14.20305 -14.08052 -13.88159 -13.86462 -13.52712 -12.93691 -12.56046 -12.43723 -12.29209 -11.96862 -11.86574 -11.61535 -11.56104 -11.45998 -11.33271 -11.10722 -10.81893 -10.64208 -10.55075 -10.25230 -10.07448 -9.77365 -9.66414 -8.45958 -8.15219 -6.08246 -4.11720 0.59651 2.57530 3.11009 3.33269 3.36929 3.41764 3.59433 3.69367 3.82929 3.93044 4.27621 4.38055 4.42987 4.55222 4.78645 4.91560 4.96538 5.06167 5.10286 5.27009 5.31670 5.56071 5.56379 5.71981 5.72846 5.97999 6.05175 6.20618 6.47258 6.54244 7.13764 7.31181 7.52048 7.89079 8.17325 8.90180 9.53330 11.00465 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.004843 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.603397 B = 5780.565467 C = 6810.321435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.254 3.746 10 N -0.975 5.975 11 C 0.150 3.850 12 C -0.175 4.175 13 C -0.194 4.194 14 C -0.172 4.172 15 S 2.611 3.389 16 O -0.966 6.966 17 O -0.929 6.929 18 C -0.660 4.660 19 C -0.156 4.156 20 C 0.462 3.538 21 F -0.181 7.181 22 F -0.184 7.184 23 F -0.179 7.179 24 H 0.264 0.736 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -15.562 0.775 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.133 3.867 10 N -0.813 5.813 11 C 0.023 3.977 12 C -0.195 4.195 13 C -0.231 4.231 14 C -0.210 4.210 15 S 2.699 3.301 16 O -0.956 6.956 17 O -0.919 6.919 18 C -0.783 4.783 19 C -0.196 4.196 20 C 0.407 3.593 21 F -0.163 7.163 22 F -0.165 7.165 23 F -0.160 7.160 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.140 0.860 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.115 -15.213 1.335 15.417 hybrid contribution -0.575 0.308 -0.263 0.703 sum 1.541 -14.905 1.073 15.023 Atomic orbital electron populations 1.69904 1.05983 1.27236 1.50469 1.24916 0.94883 0.99240 0.94926 0.86576 0.79581 0.82614 0.78795 1.20195 1.21223 1.19994 1.21407 0.93619 0.90462 1.51023 0.92095 1.19132 0.87031 0.82118 0.98439 1.57385 1.59886 1.44512 1.19521 1.20838 0.94215 0.96647 0.85971 1.23077 1.01564 0.94883 0.99951 1.23154 1.02684 0.93764 1.03462 1.22855 1.03277 1.03955 0.90873 1.05094 0.75235 0.74999 0.74731 1.93526 1.35604 1.81719 1.84780 1.93657 1.86199 1.51777 1.60236 1.31022 1.22712 1.20994 1.03607 1.22531 0.99929 0.97071 1.00049 1.20280 0.82036 0.83314 0.73658 1.93185 1.96345 1.70518 1.56219 1.93191 1.93487 1.82071 1.47763 1.93205 1.41292 1.85475 1.96028 0.92627 0.94363 0.94355 0.88849 0.89823 0.87128 0.88467 0.89127 0.89002 0.88643 0.83791 0.84119 0.86028 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.18 9.38 -34.44 -0.32 -14.51 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.25 5.95 5.01 -5.20 -0.03 5.93 16 10 N -0.97 -18.40 2.70 -115.67 -0.31 -18.72 16 11 C 0.15 2.42 5.94 -4.05 -0.02 2.39 16 12 C -0.17 -2.34 6.01 -90.62 -0.54 -2.89 16 13 C -0.19 -2.18 10.18 -26.73 -0.27 -2.45 16 14 C -0.17 -1.95 10.25 -26.73 -0.27 -2.22 16 15 S 2.61 45.35 5.38 -107.50 -0.58 44.77 16 16 O -0.97 -17.62 16.52 -57.54 -0.95 -18.57 16 17 O -0.93 -20.07 16.99 -57.54 -0.98 -21.05 16 18 C -0.66 -8.26 5.93 37.16 0.22 -8.04 16 19 C -0.16 -1.69 5.27 -26.73 -0.14 -1.83 16 20 C 0.46 5.19 3.16 37.16 0.12 5.31 16 21 F -0.18 -2.10 16.80 2.25 0.04 -2.06 16 22 F -0.18 -2.04 17.32 2.25 0.04 -2.01 16 23 F -0.18 -2.22 16.80 2.25 0.04 -2.18 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 26 H 0.04 0.94 7.61 -51.93 -0.40 0.55 16 27 H 0.09 1.59 8.11 -51.93 -0.42 1.16 16 28 H 0.08 1.28 6.55 -51.93 -0.34 0.94 16 29 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.14 1.74 7.80 -51.92 -0.41 1.34 16 35 H 0.14 1.52 7.80 -51.92 -0.41 1.11 16 36 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -31.76 342.21 -8.08 -39.84 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.89 Total: -0.13 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -1.36 Total: -16.68 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.42 Total: -43.48 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.93 Total: -39.62 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.11 Total: -6.24 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 45.35 SS G_CDS: -0.58 Total: 44.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.76 -8.08 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439175813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.059 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds