Wall clock time and date at job start Tue Mar 31 2020 11:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48501 * 109.46894 * 239.99720 * 3 2 1 5 5 H 1.48504 * 109.47200 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47180 * 120.00189 * 3 2 1 7 7 C 1.37879 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99842 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47225 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00444 * 275.27579 * 10 9 7 12 12 C 1.52997 * 109.47398 * 274.72686 * 11 10 9 13 13 C 1.53005 * 117.49989 * 243.61967 * 12 11 10 14 14 C 1.52997 * 60.00061 * 252.50806 * 13 12 11 15 15 S 1.65608 * 119.99583 * 95.00259 * 10 9 7 16 16 O 1.42105 * 104.27567 * 206.07049 * 15 10 9 17 17 O 1.42099 * 104.27801 * 333.93019 * 15 10 9 18 18 C 1.81397 * 104.44917 * 90.00089 * 15 10 9 19 19 C 1.53002 * 109.47293 * 179.97438 * 18 15 10 20 20 C 1.52999 * 109.47402 * 179.97438 * 19 18 15 21 21 F 1.39908 * 109.46678 * 60.00340 * 20 19 18 22 22 F 1.39896 * 109.47231 * 179.97438 * 20 19 18 23 23 F 1.39902 * 109.47451 * 300.00608 * 20 19 18 24 24 H 0.97002 * 119.99268 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47181 * 59.99732 * 9 7 2 26 26 H 1.09001 * 109.47277 * 300.00727 * 9 7 2 27 27 H 1.09004 * 109.46868 * 34.72321 * 11 10 9 28 28 H 1.09004 * 109.47439 * 154.72444 * 11 10 9 29 29 H 1.08997 * 115.54840 * 29.32534 * 12 11 10 30 30 H 1.09002 * 117.49693 * 0.02562 * 13 12 11 31 31 H 1.09000 * 117.49634 * 145.01940 * 13 12 11 32 32 H 1.09001 * 117.50089 * 252.51283 * 14 13 12 33 33 H 1.09003 * 117.50184 * 107.48619 * 14 13 12 34 34 H 1.09001 * 109.47492 * 299.99928 * 18 15 10 35 35 H 1.09001 * 109.47146 * 59.99771 * 18 15 10 36 36 H 1.09001 * 109.47069 * 300.00526 * 19 18 15 37 37 H 1.09001 * 109.46935 * 59.99981 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.7666 -4.0943 -1.2620 12 6 1.8120 -5.1104 -1.8920 13 6 2.3144 -6.5466 -2.0527 14 6 2.1663 -5.6462 -3.2807 15 16 2.6470 -4.3226 1.4302 16 8 3.9359 -4.8606 1.1685 17 8 2.4626 -3.3015 2.4011 18 6 1.4381 -5.6538 1.6691 19 6 1.7457 -6.3944 2.9721 20 6 0.7257 -7.5168 3.1740 21 9 0.7985 -8.4114 2.1008 22 9 1.0073 -8.1942 4.3651 23 9 -0.5610 -6.9714 3.2400 24 1 -0.4849 0.8401 -0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 2.9034 -3.2538 -1.9425 28 1 3.7294 -4.5691 -1.0728 29 1 0.7561 -4.9691 -1.6614 30 1 3.3250 -6.7676 -1.7091 31 1 1.5890 -7.3505 -1.9276 32 1 1.3435 -5.8576 -3.9636 33 1 3.0796 -5.2746 -3.7455 34 1 0.4354 -5.2294 1.7200 35 1 1.4955 -6.3510 0.8331 36 1 2.7483 -6.8189 2.9208 37 1 1.6886 -5.6974 3.8083 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439175813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:55 Heat of formation + Delta-G solvation = -226.973348 kcal Electronic energy + Delta-G solvation = -25512.353289 eV Core-core repulsion = 21194.823767 eV Total energy + Delta-G solvation = -4317.529523 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.15800 -48.65871 -48.62790 -38.88612 -38.13218 -36.98557 -36.38277 -35.23424 -34.35353 -29.61218 -27.94607 -27.00924 -24.43157 -23.60690 -23.12124 -21.43739 -20.00118 -19.62745 -19.46224 -18.96542 -18.50432 -18.06691 -17.42514 -17.12631 -16.60206 -16.08984 -15.90087 -15.53716 -15.37180 -15.19154 -15.05829 -14.89719 -14.78246 -14.75045 -14.37707 -14.01904 -13.83627 -13.47662 -13.28435 -13.16133 -13.14498 -12.90558 -12.81643 -12.80014 -12.51769 -12.35443 -12.24719 -12.03855 -11.79749 -11.69261 -11.18900 -10.74105 -10.55202 -9.74443 -8.17251 -6.27368 -0.77104 1.40971 1.43913 1.50701 1.62243 1.78529 2.43421 2.66630 2.70009 2.95921 2.97330 3.04283 3.13509 3.19778 3.55839 3.72112 3.90892 4.02058 4.11033 4.14361 4.30064 4.36185 4.46789 4.57850 4.86915 4.93042 5.05483 5.11354 5.24449 5.35961 5.38767 5.51675 5.74018 5.94233 6.15525 6.80199 7.40741 8.89988 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.004843 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.603397 B = 5780.565467 C = 6810.321435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.050 0.950 9 C 0.270 3.730 10 N -0.985 5.985 11 C 0.147 3.853 12 C -0.194 4.194 13 C -0.178 4.178 14 C -0.165 4.165 15 S 2.614 3.386 16 O -0.978 6.978 17 O -0.980 6.980 18 C -0.631 4.631 19 C -0.166 4.166 20 C 0.468 3.532 21 F -0.181 7.181 22 F -0.181 7.181 23 F -0.186 7.186 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.022 0.978 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.152 0.848 35 H 0.166 0.834 36 H 0.146 0.854 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 -17.239 0.419 17.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.069 0.931 9 C 0.147 3.853 10 N -0.821 5.821 11 C 0.022 3.978 12 C -0.214 4.214 13 C -0.215 4.215 14 C -0.203 4.203 15 S 2.708 3.292 16 O -0.969 6.969 17 O -0.971 6.971 18 C -0.761 4.761 19 C -0.206 4.206 20 C 0.413 3.587 21 F -0.162 7.162 22 F -0.163 7.163 23 F -0.168 7.168 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.040 0.960 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.164 0.836 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.422 -16.860 0.948 17.059 hybrid contribution -0.641 0.703 -0.129 0.960 sum 1.781 -16.157 0.819 16.275 Atomic orbital electron populations 1.69990 1.07074 1.28016 1.51390 1.25672 0.95735 1.02397 0.94792 0.85711 0.78608 0.79163 0.78851 1.19057 1.20319 1.20354 1.21784 0.93432 0.92440 1.50581 0.93149 1.18644 0.87139 0.82452 0.97105 1.57212 1.59351 1.44508 1.21066 1.20919 0.95313 0.96820 0.84769 1.22859 1.00531 0.95924 1.02052 1.23253 1.03219 0.92603 1.02399 1.22979 1.03866 1.03049 0.90392 1.04672 0.75662 0.75408 0.73419 1.93503 1.37049 1.81740 1.84594 1.93598 1.87081 1.54957 1.61465 1.30652 1.20483 1.18981 1.05990 1.22731 1.01276 0.97325 0.99228 1.20182 0.81578 0.83223 0.73705 1.93189 1.96307 1.70537 1.56198 1.93199 1.93432 1.81985 1.47666 1.93198 1.41923 1.85600 1.96068 0.92484 0.95171 0.95955 0.90736 0.89117 0.87719 0.87997 0.87340 0.87745 0.88156 0.82991 0.81562 0.83593 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16 2 C 0.01 0.75 5.46 84.66 0.46 1.21 16 3 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.54 -30.07 9.38 25.60 0.24 -29.83 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 9 C 0.27 13.01 5.01 85.64 0.43 13.44 16 10 N -0.98 -37.62 2.70 -519.86 -1.40 -39.02 16 11 C 0.15 4.75 5.94 86.38 0.51 5.26 16 12 C -0.19 -4.94 6.01 -10.79 -0.06 -5.00 16 13 C -0.18 -3.48 10.18 30.59 0.31 -3.16 16 14 C -0.17 -3.38 10.25 30.59 0.31 -3.07 16 15 S 2.61 89.95 5.38 -56.49 -0.30 89.65 16 16 O -0.98 -34.88 16.52 -127.65 -2.11 -36.99 16 17 O -0.98 -43.29 16.99 -127.65 -2.17 -45.46 16 18 C -0.63 -14.47 5.93 71.98 0.43 -14.04 16 19 C -0.17 -3.15 5.27 30.59 0.16 -2.99 16 20 C 0.47 9.26 3.16 71.98 0.23 9.49 16 21 F -0.18 -3.61 16.80 44.97 0.76 -2.86 16 22 F -0.18 -3.59 17.32 44.97 0.78 -2.81 16 23 F -0.19 -4.22 16.80 44.97 0.76 -3.47 16 24 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.03 1.48 8.11 -2.38 -0.02 1.46 16 26 H 0.02 1.14 7.61 -2.39 -0.02 1.12 16 27 H 0.07 2.61 8.11 -2.39 -0.02 2.59 16 28 H 0.09 2.74 6.55 -2.39 -0.02 2.72 16 29 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.10 1.92 8.03 -2.39 -0.02 1.90 16 31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.15 3.39 7.80 -2.39 -0.02 3.38 16 35 H 0.17 3.03 7.80 -2.39 -0.02 3.01 16 36 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.89 342.21 2.72 -66.18 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.08 Total: 10.32 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 3.02 Total: -28.70 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -1.12 Total: -92.16 kcal Atomic # 8 Polarization: -78.17 SS G_CDS: -4.28 Total: -82.45 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 2.29 Total: -9.13 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 89.95 SS G_CDS: -0.30 Total: 89.65 kcal Total: -68.89 2.72 -66.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439175813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.797 kcal (2) G-P(sol) polarization free energy of solvation -68.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds