Wall clock time and date at job start Tue Mar 31 2020 11:05:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 120.00167 * 2 1
4 4 H 1.48501 * 109.46894 * 239.99720 * 3 2 1
5 5 H 1.48504 * 109.47200 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47180 * 120.00189 * 3 2 1
7 7 C 1.37879 * 120.00028 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00092 * 180.02562 * 7 2 1
9 9 C 1.50703 * 119.99842 * 359.97438 * 7 2 1
10 10 N 1.46494 * 109.47225 * 179.97438 * 9 7 2
11 11 C 1.46493 * 120.00444 * 275.27579 * 10 9 7
12 12 C 1.52997 * 109.47398 * 274.72686 * 11 10 9
13 13 C 1.53005 * 117.49989 * 243.61967 * 12 11 10
14 14 C 1.52997 * 60.00061 * 252.50806 * 13 12 11
15 15 S 1.65608 * 119.99583 * 95.00259 * 10 9 7
16 16 O 1.42105 * 104.27567 * 206.07049 * 15 10 9
17 17 O 1.42099 * 104.27801 * 333.93019 * 15 10 9
18 18 C 1.81397 * 104.44917 * 90.00089 * 15 10 9
19 19 C 1.53002 * 109.47293 * 179.97438 * 18 15 10
20 20 C 1.52999 * 109.47402 * 179.97438 * 19 18 15
21 21 F 1.39908 * 109.46678 * 60.00340 * 20 19 18
22 22 F 1.39896 * 109.47231 * 179.97438 * 20 19 18
23 23 F 1.39902 * 109.47451 * 300.00608 * 20 19 18
24 24 H 0.97002 * 119.99268 * 0.02562 * 1 2 3
25 25 H 1.09005 * 109.47181 * 59.99732 * 9 7 2
26 26 H 1.09001 * 109.47277 * 300.00727 * 9 7 2
27 27 H 1.09004 * 109.46868 * 34.72321 * 11 10 9
28 28 H 1.09004 * 109.47439 * 154.72444 * 11 10 9
29 29 H 1.08997 * 115.54840 * 29.32534 * 12 11 10
30 30 H 1.09002 * 117.49693 * 0.02562 * 13 12 11
31 31 H 1.09000 * 117.49634 * 145.01940 * 13 12 11
32 32 H 1.09001 * 117.50089 * 252.51283 * 14 13 12
33 33 H 1.09003 * 117.50184 * 107.48619 * 14 13 12
34 34 H 1.09001 * 109.47492 * 299.99928 * 18 15 10
35 35 H 1.09001 * 109.47146 * 59.99771 * 18 15 10
36 36 H 1.09001 * 109.47069 * 300.00526 * 19 18 15
37 37 H 1.09001 * 109.46935 * 59.99981 * 19 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2842 2.7465 -0.0006
6 1 3.1030 1.6963 1.2125
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0017
10 7 2.2029 -3.6127 0.0015
11 6 2.7666 -4.0943 -1.2620
12 6 1.8120 -5.1104 -1.8920
13 6 2.3144 -6.5466 -2.0527
14 6 2.1663 -5.6462 -3.2807
15 16 2.6470 -4.3226 1.4302
16 8 3.9359 -4.8606 1.1685
17 8 2.4626 -3.3015 2.4011
18 6 1.4381 -5.6538 1.6691
19 6 1.7457 -6.3944 2.9721
20 6 0.7257 -7.5168 3.1740
21 9 0.7985 -8.4114 2.1008
22 9 1.0073 -8.1942 4.3651
23 9 -0.5610 -6.9714 3.2400
24 1 -0.4849 0.8401 -0.0004
25 1 0.6239 -2.5575 -0.8880
26 1 0.6246 -2.5563 0.8919
27 1 2.9034 -3.2538 -1.9425
28 1 3.7294 -4.5691 -1.0728
29 1 0.7561 -4.9691 -1.6614
30 1 3.3250 -6.7676 -1.7091
31 1 1.5890 -7.3505 -1.9276
32 1 1.3435 -5.8576 -3.9636
33 1 3.0796 -5.2746 -3.7455
34 1 0.4354 -5.2294 1.7200
35 1 1.4955 -6.3510 0.8331
36 1 2.7483 -6.8189 2.9208
37 1 1.6886 -5.6974 3.8083
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000439175813.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:55
Heat of formation + Delta-G solvation = -226.973348 kcal
Electronic energy + Delta-G solvation = -25512.353289 eV
Core-core repulsion = 21194.823767 eV
Total energy + Delta-G solvation = -4317.529523 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.090 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-51.15800 -48.65871 -48.62790 -38.88612 -38.13218 -36.98557 -36.38277 -35.23424
-34.35353 -29.61218 -27.94607 -27.00924 -24.43157 -23.60690 -23.12124 -21.43739
-20.00118 -19.62745 -19.46224 -18.96542 -18.50432 -18.06691 -17.42514 -17.12631
-16.60206 -16.08984 -15.90087 -15.53716 -15.37180 -15.19154 -15.05829 -14.89719
-14.78246 -14.75045 -14.37707 -14.01904 -13.83627 -13.47662 -13.28435 -13.16133
-13.14498 -12.90558 -12.81643 -12.80014 -12.51769 -12.35443 -12.24719 -12.03855
-11.79749 -11.69261 -11.18900 -10.74105 -10.55202 -9.74443 -8.17251 -6.27368
-0.77104 1.40971 1.43913 1.50701 1.62243 1.78529 2.43421 2.66630
2.70009 2.95921 2.97330 3.04283 3.13509 3.19778 3.55839 3.72112
3.90892 4.02058 4.11033 4.14361 4.30064 4.36185 4.46789 4.57850
4.86915 4.93042 5.05483 5.11354 5.24449 5.35961 5.38767 5.51675
5.74018 5.94233 6.15525 6.80199 7.40741 8.89988
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.013923 B = 0.004843 C = 0.004110
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2010.603397 B = 5780.565467 C = 6810.321435
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.013 3.987
3 Si 0.951 3.049
4 H -0.266 1.266
5 H -0.278 1.278
6 H -0.278 1.278
7 C -0.543 4.543
8 H 0.050 0.950
9 C 0.270 3.730
10 N -0.985 5.985
11 C 0.147 3.853
12 C -0.194 4.194
13 C -0.178 4.178
14 C -0.165 4.165
15 S 2.614 3.386
16 O -0.978 6.978
17 O -0.980 6.980
18 C -0.631 4.631
19 C -0.166 4.166
20 C 0.468 3.532
21 F -0.181 7.181
22 F -0.181 7.181
23 F -0.186 7.186
24 H 0.266 0.734
25 H 0.030 0.970
26 H 0.022 0.978
27 H 0.074 0.926
28 H 0.091 0.909
29 H 0.105 0.895
30 H 0.102 0.898
31 H 0.108 0.892
32 H 0.104 0.896
33 H 0.100 0.900
34 H 0.152 0.848
35 H 0.166 0.834
36 H 0.146 0.854
37 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.872 -17.239 0.419 17.346
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.186 4.186
3 Si 0.777 3.223
4 H -0.191 1.191
5 H -0.203 1.203
6 H -0.204 1.204
7 C -0.582 4.582
8 H 0.069 0.931
9 C 0.147 3.853
10 N -0.821 5.821
11 C 0.022 3.978
12 C -0.214 4.214
13 C -0.215 4.215
14 C -0.203 4.203
15 S 2.708 3.292
16 O -0.969 6.969
17 O -0.971 6.971
18 C -0.761 4.761
19 C -0.206 4.206
20 C 0.413 3.587
21 F -0.162 7.162
22 F -0.163 7.163
23 F -0.168 7.168
24 H 0.075 0.925
25 H 0.048 0.952
26 H 0.040 0.960
27 H 0.093 0.907
28 H 0.109 0.891
29 H 0.123 0.877
30 H 0.120 0.880
31 H 0.127 0.873
32 H 0.123 0.877
33 H 0.118 0.882
34 H 0.170 0.830
35 H 0.184 0.816
36 H 0.164 0.836
37 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 2.422 -16.860 0.948 17.059
hybrid contribution -0.641 0.703 -0.129 0.960
sum 1.781 -16.157 0.819 16.275
Atomic orbital electron populations
1.69990 1.07074 1.28016 1.51390 1.25672 0.95735 1.02397 0.94792
0.85711 0.78608 0.79163 0.78851 1.19057 1.20319 1.20354 1.21784
0.93432 0.92440 1.50581 0.93149 1.18644 0.87139 0.82452 0.97105
1.57212 1.59351 1.44508 1.21066 1.20919 0.95313 0.96820 0.84769
1.22859 1.00531 0.95924 1.02052 1.23253 1.03219 0.92603 1.02399
1.22979 1.03866 1.03049 0.90392 1.04672 0.75662 0.75408 0.73419
1.93503 1.37049 1.81740 1.84594 1.93598 1.87081 1.54957 1.61465
1.30652 1.20483 1.18981 1.05990 1.22731 1.01276 0.97325 0.99228
1.20182 0.81578 0.83223 0.73705 1.93189 1.96307 1.70537 1.56198
1.93199 1.93432 1.81985 1.47666 1.93198 1.41923 1.85600 1.96068
0.92484 0.95171 0.95955 0.90736 0.89117 0.87719 0.87997 0.87340
0.87745 0.88156 0.82991 0.81562 0.83593 0.84694
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16
2 C 0.01 0.75 5.46 84.66 0.46 1.21 16
3 Si 0.95 44.27 29.54 68.60 2.03 46.29 16
4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16
5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16
7 C -0.54 -30.07 9.38 25.60 0.24 -29.83 16
8 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16
9 C 0.27 13.01 5.01 85.64 0.43 13.44 16
10 N -0.98 -37.62 2.70 -519.86 -1.40 -39.02 16
11 C 0.15 4.75 5.94 86.38 0.51 5.26 16
12 C -0.19 -4.94 6.01 -10.79 -0.06 -5.00 16
13 C -0.18 -3.48 10.18 30.59 0.31 -3.16 16
14 C -0.17 -3.38 10.25 30.59 0.31 -3.07 16
15 S 2.61 89.95 5.38 -56.49 -0.30 89.65 16
16 O -0.98 -34.88 16.52 -127.65 -2.11 -36.99 16
17 O -0.98 -43.29 16.99 -127.65 -2.17 -45.46 16
18 C -0.63 -14.47 5.93 71.98 0.43 -14.04 16
19 C -0.17 -3.15 5.27 30.59 0.16 -2.99 16
20 C 0.47 9.26 3.16 71.98 0.23 9.49 16
21 F -0.18 -3.61 16.80 44.97 0.76 -2.86 16
22 F -0.18 -3.59 17.32 44.97 0.78 -2.81 16
23 F -0.19 -4.22 16.80 44.97 0.76 -3.47 16
24 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16
25 H 0.03 1.48 8.11 -2.38 -0.02 1.46 16
26 H 0.02 1.14 7.61 -2.39 -0.02 1.12 16
27 H 0.07 2.61 8.11 -2.39 -0.02 2.59 16
28 H 0.09 2.74 6.55 -2.39 -0.02 2.72 16
29 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16
30 H 0.10 1.92 8.03 -2.39 -0.02 1.90 16
31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16
32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16
33 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16
34 H 0.15 3.39 7.80 -2.39 -0.02 3.38 16
35 H 0.17 3.03 7.80 -2.39 -0.02 3.01 16
36 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16
37 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16
Total: -1.00 -68.89 342.21 2.72 -66.18
By element:
Atomic # 1 Polarization: 9.24 SS G_CDS: 1.08 Total: 10.32 kcal
Atomic # 6 Polarization: -31.72 SS G_CDS: 3.02 Total: -28.70 kcal
Atomic # 7 Polarization: -91.04 SS G_CDS: -1.12 Total: -92.16 kcal
Atomic # 8 Polarization: -78.17 SS G_CDS: -4.28 Total: -82.45 kcal
Atomic # 9 Polarization: -11.42 SS G_CDS: 2.29 Total: -9.13 kcal
Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal
Atomic # 16 Polarization: 89.95 SS G_CDS: -0.30 Total: 89.65 kcal
Total: -68.89 2.72 -66.18 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000439175813.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -160.797 kcal
(2) G-P(sol) polarization free energy of solvation -68.895 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.691 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.177 kcal
(6) G-S(sol) free energy of system = (1) + (5) -226.973 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds