Wall clock time and date at job start Tue Mar 31 2020 10:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46509 * 109.47004 * 2 1 4 4 C 1.46504 * 119.99649 * 85.00027 * 3 2 1 5 5 C 1.50692 * 109.47291 * 274.44293 * 4 3 2 6 6 H 1.08000 * 120.00104 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99873 * 180.02562 * 5 4 3 8 8 N 1.31505 * 120.00156 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99605 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47240 * 90.00324 * 9 7 5 11 11 H 1.48505 * 109.46650 * 210.00025 * 9 7 5 12 12 H 1.48501 * 109.47258 * 329.99659 * 9 7 5 13 13 S 1.65596 * 120.00236 * 265.00249 * 3 2 1 14 14 O 1.42101 * 106.40122 * 18.24486 * 13 3 2 15 15 O 1.42094 * 106.40254 * 151.16698 * 13 3 2 16 16 C 1.76196 * 107.21619 * 264.70689 * 13 3 2 17 17 C 1.38102 * 120.04588 * 14.21393 * 16 13 3 18 18 C 1.38278 * 120.08543 * 179.97438 * 17 16 13 19 19 C 1.38328 * 120.16001 * 0.04468 * 18 17 16 20 20 C 1.38056 * 120.08103 * 359.97438 * 19 18 17 21 21 C 1.38958 * 120.03950 * 193.93962 * 16 13 3 22 22 S 1.76197 * 120.08079 * 359.97438 * 21 16 13 23 23 C 1.81400 * 103.00244 * 179.97438 * 22 21 16 24 24 H 1.09000 * 109.47518 * 59.99566 * 1 2 3 25 25 H 1.09002 * 109.47497 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47102 * 300.00003 * 1 2 3 27 27 H 1.09003 * 109.46939 * 240.00527 * 2 1 3 28 28 H 1.08991 * 109.47535 * 120.00236 * 2 1 3 29 29 H 1.09005 * 109.46677 * 34.44201 * 4 3 2 30 30 H 1.08998 * 109.46587 * 154.43907 * 4 3 2 31 31 H 0.97002 * 120.00460 * 180.02562 * 8 7 5 32 32 H 1.08005 * 119.95464 * 0.02562 * 17 16 13 33 33 H 1.08000 * 119.92127 * 180.02562 * 18 17 16 34 34 H 1.07994 * 119.95810 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.04307 * 180.02562 * 20 19 18 36 36 H 1.09009 * 109.46878 * 59.99768 * 23 22 21 37 37 H 1.08994 * 109.46863 * 179.97438 * 23 22 21 38 38 H 1.08993 * 109.46825 * 299.99938 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 1.2640 5 6 0.8395 2.7402 1.6288 6 1 -0.0171 2.6129 0.9834 7 6 0.7267 3.4815 2.7859 8 7 1.7699 3.6369 3.5714 9 14 -0.9078 4.2648 3.2376 10 1 -1.6997 3.3173 4.0624 11 1 -0.6635 5.5092 4.0105 12 1 -1.6596 4.5909 1.9992 13 16 2.4121 2.1204 -1.4286 14 8 1.7861 1.3653 -2.4569 15 8 2.1857 3.5100 -1.2372 16 6 4.1485 1.9257 -1.6552 17 6 4.8484 1.0163 -0.8869 18 6 6.2111 0.8624 -1.0644 19 6 6.8785 1.6189 -2.0109 20 6 6.1855 2.5302 -2.7824 21 6 4.8145 2.6829 -2.6112 22 16 3.9245 3.8388 -3.5993 23 6 5.2146 4.5486 -4.6587 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 2.4593 1.4163 2.0502 30 1 2.9150 2.8854 1.1543 31 1 1.6905 4.1581 4.3857 32 1 4.3306 0.4239 -0.1470 33 1 6.7558 0.1502 -0.4624 34 1 7.9428 1.4964 -2.1465 35 1 6.7071 3.1202 -3.5215 36 1 5.6743 3.7574 -5.2512 37 1 4.7714 5.2895 -5.3241 38 1 5.9732 5.0250 -4.0378 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444091714.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:51 Heat of formation + Delta-G solvation = -61.444675 kcal Electronic energy + Delta-G solvation = -22736.216678 eV Core-core repulsion = 19410.474629 eV Total energy + Delta-G solvation = -3325.742049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07202 -38.19461 -37.79243 -36.82248 -34.64564 -32.61268 -32.33616 -31.44964 -29.82249 -28.68851 -24.72465 -24.41466 -24.02678 -23.36447 -20.26287 -19.19280 -18.58380 -18.47973 -17.83290 -17.13878 -16.63101 -16.36577 -16.14729 -15.56129 -15.39985 -15.08725 -14.88444 -14.66465 -14.60737 -13.99767 -13.96843 -13.67258 -13.53229 -13.50235 -13.14468 -13.06431 -12.93817 -12.83859 -12.75808 -12.44959 -12.23412 -12.16871 -11.97625 -11.65233 -11.51205 -11.18226 -10.92717 -10.55115 -10.41504 -9.86984 -8.73448 -8.17260 -6.26027 -0.56356 -0.29656 0.10837 0.27272 1.21413 1.39058 1.41902 1.52347 2.03866 2.39386 2.43524 2.75491 3.14418 3.56238 3.71185 3.92645 3.98143 4.15480 4.19226 4.20770 4.25454 4.45454 4.46365 4.51744 4.69880 4.70948 4.75491 4.85498 4.96690 5.10870 5.15771 5.19730 5.26983 5.44989 5.56768 5.74203 5.76594 5.93871 6.14516 6.80652 7.41289 8.90988 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.005082 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.621786 B = 5508.286264 C = 5745.679384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.986 5.986 4 C 0.272 3.728 5 C -0.536 4.536 6 H 0.054 0.946 7 C 0.014 3.986 8 N -0.925 5.925 9 Si 0.950 3.050 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.278 1.278 13 S 2.680 3.320 14 O -0.987 6.987 15 O -0.975 6.975 16 C -0.678 4.678 17 C -0.027 4.027 18 C -0.141 4.141 19 C -0.043 4.043 20 C -0.154 4.154 21 C -0.012 4.012 22 S -0.203 6.203 23 C -0.123 4.123 24 H 0.033 0.967 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.041 0.959 30 H 0.011 0.989 31 H 0.266 0.734 32 H 0.147 0.853 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.166 0.834 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.359 -6.696 -12.453 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.008 4.008 3 N -0.827 5.827 4 C 0.149 3.851 5 C -0.575 4.575 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.565 5.565 9 Si 0.775 3.225 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.203 1.203 13 S 2.772 3.228 14 O -0.977 6.977 15 O -0.965 6.965 16 C -0.773 4.773 17 C -0.047 4.047 18 C -0.162 4.162 19 C -0.063 4.063 20 C -0.178 4.178 21 C -0.127 4.127 22 S 0.041 5.959 23 C -0.291 4.291 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.165 0.835 33 H 0.189 0.811 34 H 0.198 0.802 35 H 0.183 0.817 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.643 -5.796 -12.968 18.366 hybrid contribution 0.664 0.325 0.676 1.002 sum 12.307 -5.471 -12.292 18.234 Atomic orbital electron populations 1.22244 0.96459 1.02856 1.01554 1.21451 0.95117 0.80473 1.03779 1.57340 1.78794 1.24403 1.22143 1.18711 0.95748 0.90599 0.80061 1.21800 0.97390 1.31783 1.06577 0.92750 1.25661 0.99994 0.96556 0.96338 1.69995 1.30942 1.41607 1.14002 0.85679 0.80231 0.78432 0.78143 1.18847 1.20550 1.20273 1.02040 0.74856 0.73235 0.72653 1.93484 1.75061 1.72648 1.56537 1.93566 1.84894 1.32824 1.85229 1.30549 1.26590 1.10761 1.09423 1.21213 0.96470 0.92693 0.94349 1.21786 0.93251 1.01416 0.99735 1.21891 1.01934 0.91078 0.91381 1.21723 0.90807 1.02089 1.03211 1.21427 0.98165 0.96549 0.96550 1.86711 1.20172 1.46511 1.42505 1.23907 0.99160 1.05089 1.00910 0.94775 0.88998 0.92510 0.89353 0.88208 0.94149 0.97132 0.92498 0.83498 0.81090 0.80156 0.81706 0.87059 0.84999 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.13 9.85 71.98 0.71 -5.42 16 2 C 0.12 4.03 5.90 86.38 0.51 4.54 16 3 N -0.99 -42.76 1.82 -519.84 -0.95 -43.71 16 4 C 0.27 13.94 5.11 85.63 0.44 14.38 16 5 C -0.54 -30.66 8.42 25.60 0.22 -30.45 16 6 H 0.05 3.15 6.95 -2.91 -0.02 3.13 16 7 C 0.01 0.78 5.46 84.66 0.46 1.24 16 8 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 9 Si 0.95 45.55 29.54 68.60 2.03 47.58 16 10 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 S 2.68 121.60 4.65 -56.49 -0.26 121.33 16 14 O -0.99 -45.97 16.81 -128.00 -2.15 -48.12 16 15 O -0.98 -52.58 15.85 -128.00 -2.03 -54.61 16 16 C -0.68 -25.24 5.85 22.41 0.13 -25.11 16 17 C -0.03 -0.80 9.56 22.25 0.21 -0.59 16 18 C -0.14 -2.97 10.04 22.30 0.22 -2.75 16 19 C -0.04 -0.78 10.04 22.25 0.22 -0.56 16 20 C -0.15 -3.49 9.36 22.41 0.21 -3.28 16 21 C -0.01 -0.40 6.11 22.63 0.14 -0.26 16 22 S -0.20 -6.85 20.30 -56.49 -1.15 -8.00 16 23 C -0.12 -2.10 9.15 113.37 1.04 -1.06 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 25 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.06 2.27 6.64 -2.39 -0.02 2.25 16 27 H 0.09 2.66 7.46 -2.39 -0.02 2.64 16 28 H 0.10 2.94 8.00 -2.39 -0.02 2.92 16 29 H 0.04 2.03 8.00 -2.38 -0.02 2.01 16 30 H 0.01 0.60 7.77 -2.39 -0.02 0.58 16 31 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.15 4.00 7.13 -2.91 -0.02 3.98 16 33 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 34 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.17 2.44 5.88 -2.91 -0.02 2.42 16 36 H 0.11 1.34 7.76 -2.39 -0.02 1.33 16 37 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.11 1.46 7.74 -2.39 -0.02 1.44 16 Total: -1.00 -80.93 340.60 1.35 -79.58 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.06 Total: 9.64 kcal Atomic # 6 Polarization: -53.82 SS G_CDS: 4.51 Total: -49.31 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -0.66 Total: -98.09 kcal Atomic # 8 Polarization: -98.55 SS G_CDS: -4.18 Total: -102.73 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 114.74 SS G_CDS: -1.41 Total: 113.33 kcal Total: -80.93 1.35 -79.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444091714.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.139 kcal (2) G-P(sol) polarization free energy of solvation -80.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds