Wall clock time and date at job start Tue Mar 31 2020 10:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99877 * 2 1 4 4 C 1.50707 * 109.47131 * 275.00243 * 3 2 1 5 5 C 1.33386 * 125.20292 * 89.99902 * 4 3 2 6 6 C 1.38423 * 114.92034 * 179.97438 * 5 4 3 7 7 C 1.33394 * 114.92010 * 359.97438 * 6 5 4 8 8 S 1.75880 * 125.19935 * 269.69412 * 4 3 2 9 9 S 1.65598 * 120.00096 * 180.02562 * 2 1 3 10 10 O 1.42104 * 104.27721 * 333.92388 * 9 2 1 11 11 O 1.42102 * 104.27547 * 206.06991 * 9 2 1 12 12 C 1.81402 * 104.44974 * 89.99935 * 9 2 1 13 13 C 1.52997 * 109.46924 * 186.97763 * 12 9 2 14 14 C 1.50702 * 115.55217 * 299.50410 * 13 12 9 15 15 H 1.07995 * 120.00009 * 95.16613 * 14 13 12 16 16 C 1.37873 * 120.00000 * 275.17017 * 14 13 12 17 17 N 1.31516 * 120.00200 * 7.04591 * 16 14 13 18 18 Si 1.86801 * 120.00229 * 187.05282 * 16 14 13 19 19 H 1.48496 * 109.47555 * 179.97438 * 18 16 14 20 20 H 1.48507 * 109.46877 * 300.00114 * 18 16 14 21 21 H 1.48505 * 109.46876 * 59.99440 * 18 16 14 22 22 C 1.52998 * 117.50000 * 85.17513 * 13 12 9 23 23 C 1.53003 * 117.50057 * 153.83557 * 13 12 9 24 24 H 1.09005 * 109.47032 * 270.00033 * 1 2 3 25 25 H 1.08997 * 109.47296 * 30.00055 * 1 2 3 26 26 H 1.09003 * 109.47139 * 150.00253 * 1 2 3 27 27 H 1.09001 * 109.47062 * 35.00136 * 3 2 1 28 28 H 1.09003 * 109.47472 * 155.00034 * 3 2 1 29 29 H 1.08002 * 122.54179 * 359.95986 * 5 4 3 30 30 H 1.07996 * 122.54238 * 180.02562 * 6 5 4 31 31 H 1.07998 * 125.20344 * 180.02562 * 7 6 5 32 32 H 1.08994 * 109.46994 * 66.98037 * 12 9 2 33 33 H 1.08998 * 109.47138 * 306.97289 * 12 9 2 34 34 H 0.97001 * 119.99912 * 355.42349 * 17 16 14 35 35 H 1.09002 * 117.50398 * 215.00356 * 22 13 12 36 36 H 1.09007 * 117.49849 * 0.02562 * 22 13 12 37 37 H 1.09003 * 117.49419 * 359.96926 * 23 13 12 38 38 H 1.08998 * 117.50406 * 144.97256 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3413 1.7657 -1.4155 5 6 1.4744 2.5622 -2.0426 6 6 1.8179 2.8887 -3.3432 7 6 2.9640 2.3579 -3.7720 8 16 3.6818 1.3904 -2.4904 9 16 2.2930 -1.4341 -0.0006 10 8 1.3970 -2.3564 0.6043 11 8 3.5395 -1.1193 0.6047 12 6 2.5193 -1.8253 -1.7574 13 6 3.1244 -3.2238 -1.8946 14 6 4.4733 -3.4145 -1.2502 15 1 4.5423 -3.8205 -0.2519 16 6 5.6194 -3.0705 -1.9352 17 7 5.5331 -2.4494 -3.0913 18 14 7.2947 -3.4868 -1.2214 19 1 8.3575 -3.0142 -2.1446 20 1 7.4507 -2.8202 0.0964 21 1 7.4076 -4.9574 -1.0487 22 6 2.1627 -4.4137 -1.8855 23 6 2.8451 -3.9907 -3.1888 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1858 1.1178 0.4343 29 1 0.5727 2.9246 -1.5715 30 1 1.2048 3.5257 -3.9635 31 1 3.3883 2.5031 -4.7545 32 1 3.1891 -1.0937 -2.2092 33 1 1.5544 -1.7958 -2.2635 34 1 4.6647 -2.2924 -3.4938 35 1 2.5056 -5.3345 -1.4134 36 1 1.0988 -4.2002 -1.7822 37 1 2.2298 -3.4990 -3.9423 38 1 3.6371 -4.6327 -3.5744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450976877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:00 Heat of formation + Delta-G solvation = -11.000290 kcal Electronic energy + Delta-G solvation = -23196.309490 eV Core-core repulsion = 19872.754873 eV Total energy + Delta-G solvation = -3323.554617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.07799 -37.05928 -36.40111 -35.90567 -35.11486 -31.95570 -30.54859 -28.30731 -27.15605 -25.02918 -24.59840 -22.78597 -21.39562 -19.85564 -19.24319 -18.37106 -17.19873 -17.07718 -16.85439 -15.84231 -15.53801 -15.25590 -14.45501 -14.02372 -13.80917 -13.71108 -13.29294 -13.04660 -12.81704 -12.68890 -12.59257 -12.40582 -12.33124 -11.86186 -11.62943 -11.31856 -11.17265 -11.07752 -11.01634 -10.76351 -10.62758 -10.42962 -10.35036 -10.07417 -9.71584 -9.05295 -8.66868 -8.65539 -8.48442 -8.34177 -8.18345 -6.43414 -4.22100 0.86126 1.12459 1.77967 2.17353 2.75258 3.32176 3.45957 3.50182 3.66657 4.47901 4.50874 4.76239 4.82210 4.86865 4.99448 5.13123 5.22789 5.28638 5.45486 5.51889 5.58357 5.61123 5.73292 5.78708 5.82866 5.98933 6.10727 6.16640 6.20005 6.33225 6.38606 6.52395 6.54542 6.70590 6.78423 7.04097 7.18273 8.05653 8.35197 8.79216 9.56875 10.96379 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.006928 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.715271 B = 4040.640525 C = 4901.764133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.010 6.010 3 C 0.186 3.814 4 C -0.216 4.216 5 C -0.126 4.126 6 C -0.145 4.145 7 C -0.218 4.218 8 S 0.151 5.849 9 S 2.608 3.392 10 O -0.967 6.967 11 O -0.941 6.941 12 C -0.571 4.571 13 C 0.025 3.975 14 C -0.594 4.594 15 H 0.061 0.939 16 C 0.043 3.957 17 N -0.892 5.892 18 Si 1.059 2.941 19 H -0.281 1.281 20 H -0.281 1.281 21 H -0.286 1.286 22 C -0.192 4.192 23 C -0.164 4.164 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.162 0.838 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.275 0.725 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 10.821 0.092 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.845 5.845 3 C 0.058 3.942 4 C -0.336 4.336 5 C -0.158 4.158 6 C -0.176 4.176 7 C -0.355 4.355 8 S 0.416 5.584 9 S 2.705 3.295 10 O -0.957 6.957 11 O -0.932 6.932 12 C -0.703 4.703 13 C 0.022 3.978 14 C -0.631 4.631 15 H 0.079 0.921 16 C -0.165 4.165 17 N -0.525 5.525 18 Si 0.887 3.113 19 H -0.206 1.206 20 H -0.207 1.207 21 H -0.212 1.212 22 C -0.229 4.229 23 C -0.203 4.203 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.180 0.820 32 H 0.151 0.849 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.986 9.706 0.781 11.430 hybrid contribution -3.205 0.912 -0.937 3.462 sum -9.191 10.618 -0.155 14.044 Atomic orbital electron populations 1.21383 0.79034 1.02631 1.01886 1.57991 1.14947 1.21358 1.90176 1.19730 0.98947 0.85830 0.89677 1.25267 1.00375 1.05913 1.02036 1.20044 1.00533 1.00471 0.94775 1.20101 0.97665 1.03507 0.96285 1.25813 1.01049 1.04624 1.03982 1.85436 1.22197 1.47039 1.03717 1.05222 0.73445 0.72198 0.78609 1.93494 1.65389 1.61977 1.74868 1.93530 1.43055 1.82216 1.74362 1.30288 1.07491 1.09453 1.23104 1.18536 0.95363 0.84197 0.99674 1.21360 0.89095 1.49275 1.03408 0.92114 1.25753 1.03168 0.92257 0.95358 1.70753 1.29210 1.34982 1.17603 0.83690 0.75075 0.76495 0.76083 1.20597 1.20654 1.21194 1.23049 0.96461 1.00821 1.02558 1.22786 1.02270 1.04773 0.90478 0.92493 0.91372 0.91351 0.88476 0.87532 0.84636 0.84674 0.82028 0.84943 0.88400 0.91340 0.89258 0.90760 0.91283 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 10.22 59.85 0.61 1.81 16 2 N -1.01 -16.09 3.10 -123.05 -0.38 -16.47 16 3 C 0.19 2.63 6.13 -5.19 -0.03 2.60 16 4 C -0.22 -3.07 6.09 -36.00 -0.22 -3.29 16 5 C -0.13 -1.51 10.05 -41.21 -0.41 -1.92 16 6 C -0.14 -1.69 10.18 -41.21 -0.42 -2.11 16 7 C -0.22 -2.87 11.23 29.04 0.33 -2.54 16 8 S 0.15 2.47 21.37 -107.50 -2.30 0.17 16 9 S 2.61 55.46 5.01 -107.50 -0.54 54.92 16 10 O -0.97 -22.08 17.09 -57.54 -0.98 -23.06 16 11 O -0.94 -22.93 16.08 -57.54 -0.93 -23.86 16 12 C -0.57 -12.30 5.98 37.16 0.22 -12.08 16 13 C 0.02 0.60 0.95 -155.66 -0.15 0.46 16 14 C -0.59 -16.49 7.93 -34.44 -0.27 -16.76 16 15 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 16 C 0.04 1.18 5.39 -17.82 -0.10 1.08 16 17 N -0.89 -25.16 13.57 55.43 0.75 -24.41 16 18 Si 1.06 25.23 29.91 -169.99 -5.08 20.14 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 22 C -0.19 -4.24 9.95 -26.69 -0.27 -4.50 16 23 C -0.16 -3.69 8.74 -26.69 -0.23 -3.93 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 26 H 0.07 0.85 7.79 -51.93 -0.40 0.45 16 27 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 28 H 0.11 1.67 6.82 -51.93 -0.35 1.31 16 29 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 32 H 0.13 2.92 5.70 -51.93 -0.30 2.62 16 33 H 0.10 1.81 8.11 -51.93 -0.42 1.39 16 34 H 0.28 7.60 6.17 -40.82 -0.25 7.35 16 35 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 36 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -32.82 343.74 -10.37 -43.19 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.16 Total: 5.37 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: -0.94 Total: -41.17 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.37 Total: -40.88 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -1.91 Total: -46.92 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.14 kcal Atomic # 16 Polarization: 57.93 SS G_CDS: -2.84 Total: 55.09 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.82 -10.37 -43.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450976877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.192 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds