Wall clock time and date at job start Tue Mar 31 2020 10:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99877 * 2 1 4 4 C 1.50707 * 109.47131 * 275.00243 * 3 2 1 5 5 C 1.33386 * 125.20292 * 89.99902 * 4 3 2 6 6 C 1.38423 * 114.92034 * 179.97438 * 5 4 3 7 7 C 1.33394 * 114.92010 * 359.97438 * 6 5 4 8 8 S 1.75880 * 125.19935 * 269.69412 * 4 3 2 9 9 S 1.65598 * 120.00096 * 180.02562 * 2 1 3 10 10 O 1.42104 * 104.27721 * 333.92388 * 9 2 1 11 11 O 1.42102 * 104.27547 * 206.06991 * 9 2 1 12 12 C 1.81402 * 104.44974 * 89.99935 * 9 2 1 13 13 C 1.52997 * 109.46924 * 186.97763 * 12 9 2 14 14 C 1.50702 * 115.55217 * 299.50410 * 13 12 9 15 15 H 1.07995 * 120.00009 * 95.16613 * 14 13 12 16 16 C 1.37873 * 120.00000 * 275.17017 * 14 13 12 17 17 N 1.31516 * 120.00200 * 7.04591 * 16 14 13 18 18 Si 1.86801 * 120.00229 * 187.05282 * 16 14 13 19 19 H 1.48496 * 109.47555 * 179.97438 * 18 16 14 20 20 H 1.48507 * 109.46877 * 300.00114 * 18 16 14 21 21 H 1.48505 * 109.46876 * 59.99440 * 18 16 14 22 22 C 1.52998 * 117.50000 * 85.17513 * 13 12 9 23 23 C 1.53003 * 117.50057 * 153.83557 * 13 12 9 24 24 H 1.09005 * 109.47032 * 270.00033 * 1 2 3 25 25 H 1.08997 * 109.47296 * 30.00055 * 1 2 3 26 26 H 1.09003 * 109.47139 * 150.00253 * 1 2 3 27 27 H 1.09001 * 109.47062 * 35.00136 * 3 2 1 28 28 H 1.09003 * 109.47472 * 155.00034 * 3 2 1 29 29 H 1.08002 * 122.54179 * 359.95986 * 5 4 3 30 30 H 1.07996 * 122.54238 * 180.02562 * 6 5 4 31 31 H 1.07998 * 125.20344 * 180.02562 * 7 6 5 32 32 H 1.08994 * 109.46994 * 66.98037 * 12 9 2 33 33 H 1.08998 * 109.47138 * 306.97289 * 12 9 2 34 34 H 0.97001 * 119.99912 * 355.42349 * 17 16 14 35 35 H 1.09002 * 117.50398 * 215.00356 * 22 13 12 36 36 H 1.09007 * 117.49849 * 0.02562 * 22 13 12 37 37 H 1.09003 * 117.49419 * 359.96926 * 23 13 12 38 38 H 1.08998 * 117.50406 * 144.97256 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3413 1.7657 -1.4155 5 6 1.4744 2.5622 -2.0426 6 6 1.8179 2.8887 -3.3432 7 6 2.9640 2.3579 -3.7720 8 16 3.6818 1.3904 -2.4904 9 16 2.2930 -1.4341 -0.0006 10 8 1.3970 -2.3564 0.6043 11 8 3.5395 -1.1193 0.6047 12 6 2.5193 -1.8253 -1.7574 13 6 3.1244 -3.2238 -1.8946 14 6 4.4733 -3.4145 -1.2502 15 1 4.5423 -3.8205 -0.2519 16 6 5.6194 -3.0705 -1.9352 17 7 5.5331 -2.4494 -3.0913 18 14 7.2947 -3.4868 -1.2214 19 1 8.3575 -3.0142 -2.1446 20 1 7.4507 -2.8202 0.0964 21 1 7.4076 -4.9574 -1.0487 22 6 2.1627 -4.4137 -1.8855 23 6 2.8451 -3.9907 -3.1888 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1858 1.1178 0.4343 29 1 0.5727 2.9246 -1.5715 30 1 1.2048 3.5257 -3.9635 31 1 3.3883 2.5031 -4.7545 32 1 3.1891 -1.0937 -2.2092 33 1 1.5544 -1.7958 -2.2635 34 1 4.6647 -2.2924 -3.4938 35 1 2.5056 -5.3345 -1.4134 36 1 1.0988 -4.2002 -1.7822 37 1 2.2298 -3.4990 -3.9423 38 1 3.6371 -4.6327 -3.5744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450976877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:00 Heat of formation + Delta-G solvation = -32.228942 kcal Electronic energy + Delta-G solvation = -23197.230033 eV Core-core repulsion = 19872.754873 eV Total energy + Delta-G solvation = -3324.475160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.09902 -38.89771 -38.12724 -37.12783 -36.76181 -34.02731 -31.59065 -30.01010 -28.16113 -27.06117 -25.74133 -23.85767 -23.18241 -21.69286 -20.35332 -19.83609 -18.83103 -18.52914 -18.27883 -17.29578 -17.08798 -16.34545 -15.99796 -15.67970 -15.64275 -15.08052 -14.84786 -14.57252 -14.28402 -13.92949 -13.63733 -13.59145 -13.49695 -13.37438 -13.11567 -13.05716 -13.01556 -12.68821 -12.50057 -12.37677 -12.24068 -12.12521 -11.95516 -11.53543 -11.46121 -10.59813 -10.52730 -10.42751 -9.98993 -9.67665 -9.42417 -8.59641 -6.37550 -0.68566 0.06057 0.71542 1.16446 1.50330 1.57434 1.72343 1.76319 2.01196 2.53408 2.84553 3.12288 3.15381 3.27546 3.65050 3.80158 3.90392 4.09414 4.24102 4.29095 4.33808 4.38293 4.52002 4.62399 4.68125 4.74301 4.75045 4.78672 4.91291 4.96644 4.99218 5.19841 5.24546 5.34983 5.39041 5.54161 5.66224 6.01475 6.16450 6.66047 7.44759 8.81674 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.006928 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.715271 B = 4040.640525 C = 4901.764133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.000 6.000 3 C 0.181 3.819 4 C -0.219 4.219 5 C -0.105 4.105 6 C -0.135 4.135 7 C -0.212 4.212 8 S 0.031 5.969 9 S 2.615 3.385 10 O -0.990 6.990 11 O -0.986 6.986 12 C -0.569 4.569 13 C -0.008 4.008 14 C -0.609 4.609 15 H 0.037 0.963 16 C 0.003 3.997 17 N -0.906 5.906 18 Si 1.087 2.913 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.182 4.182 23 C -0.156 4.156 24 H 0.069 0.931 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.143 0.857 28 H 0.080 0.920 29 H 0.177 0.823 30 H 0.173 0.827 31 H 0.177 0.823 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.272 0.728 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 12.793 -0.521 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.838 5.838 3 C 0.055 3.945 4 C -0.338 4.338 5 C -0.137 4.137 6 C -0.165 4.165 7 C -0.347 4.347 8 S 0.295 5.705 9 S 2.713 3.287 10 O -0.980 6.980 11 O -0.976 6.976 12 C -0.702 4.702 13 C -0.010 4.010 14 C -0.646 4.646 15 H 0.055 0.945 16 C -0.201 4.201 17 N -0.540 5.540 18 Si 0.910 3.090 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.219 4.219 23 C -0.195 4.195 24 H 0.087 0.913 25 H 0.126 0.874 26 H 0.085 0.915 27 H 0.161 0.839 28 H 0.099 0.901 29 H 0.194 0.806 30 H 0.190 0.810 31 H 0.194 0.806 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.861 11.660 0.164 14.646 hybrid contribution -2.448 0.416 -0.755 2.595 sum -11.309 12.076 -0.591 16.555 Atomic orbital electron populations 1.21772 0.76387 1.04524 1.03424 1.57574 1.16375 1.20016 1.89843 1.19941 0.98372 0.85710 0.90500 1.25149 0.99683 1.07467 1.01531 1.20507 1.00630 0.98043 0.94501 1.20568 0.96913 1.02541 0.96499 1.25972 1.01364 1.03991 1.03399 1.85895 1.26260 1.50474 1.07906 1.04636 0.72758 0.73097 0.78233 1.93450 1.65524 1.63700 1.75321 1.93470 1.45619 1.83178 1.75344 1.30188 1.08640 1.07368 1.23974 1.18614 0.94960 0.86349 1.01099 1.21517 0.91361 1.49135 1.02617 0.94508 1.26737 1.05856 0.92033 0.95476 1.70816 1.29043 1.36029 1.18134 0.83339 0.72641 0.77399 0.75584 1.19841 1.20803 1.19314 1.23117 0.97454 0.99586 1.01757 1.22737 1.02018 1.04054 0.90714 0.91259 0.87437 0.91509 0.83932 0.90145 0.80613 0.80963 0.80599 0.85514 0.85442 0.91760 0.89860 0.88146 0.88817 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.75 10.22 127.77 1.31 3.06 16 2 N -1.00 -29.92 3.10 -543.21 -1.68 -31.60 16 3 C 0.18 4.80 6.13 85.64 0.52 5.33 16 4 C -0.22 -5.75 6.09 24.59 0.15 -5.60 16 5 C -0.10 -2.01 10.05 21.22 0.21 -1.80 16 6 C -0.14 -2.57 10.18 21.22 0.22 -2.36 16 7 C -0.21 -5.16 11.23 66.72 0.75 -4.41 16 8 S 0.03 1.03 21.37 -56.49 -1.21 -0.18 16 9 S 2.62 111.62 5.01 -56.49 -0.28 111.34 16 10 O -0.99 -45.01 17.09 -127.65 -2.18 -47.20 16 11 O -0.99 -50.04 16.08 -127.65 -2.05 -52.09 16 12 C -0.57 -24.48 5.98 71.98 0.43 -24.05 16 13 C -0.01 -0.40 0.95 -52.93 -0.05 -0.45 16 14 C -0.61 -34.93 7.93 25.60 0.20 -34.72 16 15 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 16 C 0.00 0.17 5.39 84.65 0.46 0.62 16 17 N -0.91 -52.48 13.57 21.45 0.29 -52.19 16 18 Si 1.09 52.11 29.91 68.60 2.05 54.16 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C -0.18 -7.94 9.95 30.62 0.30 -7.64 16 23 C -0.16 -6.99 8.74 30.62 0.27 -6.72 16 24 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.11 1.43 8.07 -2.39 -0.02 1.41 16 26 H 0.07 1.45 7.79 -2.39 -0.02 1.43 16 27 H 0.14 2.45 8.11 -2.39 -0.02 2.43 16 28 H 0.08 2.57 6.82 -2.39 -0.02 2.56 16 29 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.13 5.71 5.70 -2.39 -0.01 5.69 16 33 H 0.13 4.51 8.11 -2.39 -0.02 4.49 16 34 H 0.27 15.42 6.17 -92.71 -0.57 14.85 16 35 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 36 H 0.10 3.81 8.14 -2.38 -0.02 3.79 16 37 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 38 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -74.95 343.74 0.96 -73.99 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.25 Total: 22.50 kcal Atomic # 6 Polarization: -83.51 SS G_CDS: 4.77 Total: -78.74 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.39 Total: -83.79 kcal Atomic # 8 Polarization: -95.05 SS G_CDS: -4.23 Total: -99.29 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.05 Total: 54.16 kcal Atomic # 16 Polarization: 112.65 SS G_CDS: -1.49 Total: 111.16 kcal Total: -74.95 0.96 -73.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450976877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.764 kcal (2) G-P(sol) polarization free energy of solvation -74.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds