Wall clock time and date at job start Tue Mar 31 2020 10:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46791 * 2 1 4 4 N 1.46491 * 109.47409 * 120.00217 * 2 1 3 5 5 S 1.65598 * 120.00140 * 265.00432 * 4 2 1 6 6 O 1.42101 * 104.27895 * 308.92653 * 5 4 2 7 7 O 1.42101 * 104.28027 * 181.07080 * 5 4 2 8 8 C 1.81399 * 104.45215 * 64.99951 * 5 4 2 9 9 C 1.52996 * 109.47278 * 180.02562 * 8 5 4 10 10 C 1.50705 * 115.54919 * 294.15329 * 9 8 5 11 11 H 1.07999 * 119.99847 * 114.68308 * 10 9 8 12 12 C 1.37878 * 119.99736 * 294.41167 * 10 9 8 13 13 N 1.31519 * 119.99792 * 177.04001 * 12 10 9 14 14 Si 1.86798 * 120.00119 * 357.04354 * 12 10 9 15 15 H 1.48502 * 109.47259 * 93.43329 * 14 12 10 16 16 H 1.48497 * 109.46704 * 213.43087 * 14 12 10 17 17 H 1.48498 * 109.47152 * 333.42912 * 14 12 10 18 18 C 1.52997 * 117.50200 * 79.82577 * 9 8 5 19 19 C 1.53001 * 117.50268 * 148.48620 * 9 8 5 20 20 C 1.50705 * 109.47287 * 240.00574 * 2 1 3 21 21 C 1.33390 * 125.20075 * 99.99537 * 20 2 1 22 22 C 1.38429 * 114.91655 * 179.97438 * 21 20 2 23 23 C 1.33386 * 114.92170 * 0.02562 * 22 21 20 24 24 S 1.75884 * 125.20120 * 279.69421 * 20 2 1 25 25 H 1.08997 * 109.47353 * 299.99454 * 1 2 3 26 26 H 1.09004 * 109.47116 * 59.99989 * 1 2 3 27 27 H 1.09001 * 109.46708 * 179.97438 * 1 2 3 28 28 H 0.97001 * 120.00233 * 84.99693 * 4 2 1 29 29 H 1.09001 * 109.47227 * 60.01539 * 8 5 4 30 30 H 1.09005 * 109.46805 * 300.02110 * 8 5 4 31 31 H 0.96997 * 119.99734 * 180.02562 * 13 12 10 32 32 H 1.09004 * 117.49719 * 215.00437 * 18 9 8 33 33 H 1.09004 * 117.50053 * 0.02562 * 18 9 8 34 34 H 1.09003 * 117.49392 * 359.97216 * 19 9 8 35 35 H 1.08997 * 117.50290 * 144.96419 * 19 9 8 36 36 H 1.07992 * 122.54281 * 359.97438 * 21 20 2 37 37 H 1.07998 * 122.54012 * 180.02562 * 22 21 20 38 38 H 1.07995 * 125.20506 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1960 5 16 2.4122 0.1771 2.5504 6 8 3.2874 1.1906 2.0751 7 8 2.8607 -0.8030 3.4765 8 6 0.8407 0.8987 3.0985 9 6 1.0753 1.7347 4.3582 10 6 1.5026 0.9631 5.5802 11 1 2.4835 1.1216 6.0032 12 6 0.6390 0.0589 6.1614 13 7 1.0323 -0.6568 7.1923 14 14 -1.0895 -0.1496 5.4845 15 1 -1.1040 -1.2587 4.4970 16 1 -2.0218 -0.4648 6.5965 17 1 -1.5168 1.1088 4.8218 18 6 1.6470 3.1421 4.1758 19 6 0.1800 2.9569 4.5719 20 6 2.0324 -0.7103 -1.2306 21 6 2.4671 -0.1115 -2.3404 22 6 2.8812 -0.9714 -3.3431 23 6 2.7823 -2.2684 -3.0476 24 16 2.1422 -2.4555 -1.4201 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.1110 -1.6562 1.1948 29 1 0.1317 0.1007 3.3187 30 1 0.4384 1.5348 2.3100 31 1 0.4248 -1.2931 7.6009 32 1 2.3322 3.5099 4.9397 33 1 1.8556 3.4727 3.1583 34 1 -0.5758 3.1656 3.8147 35 1 -0.1003 3.2026 5.5962 36 1 2.4939 0.9627 -2.4486 37 1 3.2560 -0.6189 -4.2926 38 1 3.0573 -3.0795 -3.7055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450986679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:35 Heat of formation + Delta-G solvation = -10.531422 kcal Electronic energy + Delta-G solvation = -22580.008299 eV Core-core repulsion = 19256.474014 eV Total energy + Delta-G solvation = -3323.534285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.42935 -37.13370 -36.44687 -35.94284 -35.18314 -32.19447 -30.51095 -28.94453 -28.26654 -25.53859 -24.48435 -22.18139 -21.65788 -20.14704 -19.30678 -18.58749 -17.88439 -17.02217 -16.65666 -15.73753 -15.46724 -15.26715 -15.04293 -14.39749 -14.05888 -13.92497 -13.59598 -13.16625 -12.91291 -12.84064 -12.58405 -12.38920 -12.36703 -12.15880 -11.61438 -11.43718 -11.32163 -11.21173 -11.16832 -10.85028 -10.82360 -10.73679 -10.50014 -10.19032 -9.72737 -9.47431 -9.16297 -8.84824 -8.76338 -8.63192 -8.45874 -6.16673 -4.22332 0.75659 0.92794 1.43969 1.83879 2.56223 3.13362 3.27901 3.29078 3.33084 4.32328 4.33597 4.41577 4.74204 4.80942 4.86993 4.96517 5.03183 5.06004 5.22050 5.35352 5.37098 5.38973 5.56311 5.64218 5.83053 5.86788 5.98553 6.01175 6.06439 6.11635 6.22375 6.30868 6.44371 6.59725 6.84158 7.05796 7.07139 7.58130 8.38424 8.88559 9.44163 10.95155 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.004510 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.594762 B = 6207.175251 C = 6456.331807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.216 3.784 3 H 0.110 0.890 4 N -1.128 6.128 5 S 2.612 3.388 6 O -0.965 6.965 7 O -0.927 6.927 8 C -0.581 4.581 9 C 0.000 4.000 10 C -0.505 4.505 11 H 0.086 0.914 12 C 0.092 3.908 13 N -0.879 5.879 14 Si 0.854 3.146 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.245 1.245 18 C -0.183 4.183 19 C -0.176 4.176 20 C -0.172 4.172 21 C -0.134 4.134 22 C -0.132 4.132 23 C -0.218 4.218 24 S 0.109 5.891 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.412 0.588 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.267 0.733 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 -0.439 -20.552 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.106 3.894 3 H 0.127 0.873 4 N -0.885 5.885 5 S 2.707 3.293 6 O -0.955 6.955 7 O -0.916 6.916 8 C -0.712 4.712 9 C -0.002 4.002 10 C -0.542 4.542 11 H 0.104 0.896 12 C -0.114 4.114 13 N -0.514 5.514 14 Si 0.681 3.319 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.168 1.168 18 C -0.220 4.220 19 C -0.215 4.215 20 C -0.291 4.291 21 C -0.165 4.165 22 C -0.163 4.163 23 C -0.354 4.354 24 S 0.372 5.628 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.245 0.755 29 H 0.137 0.863 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.705 -1.587 -19.122 19.264 hybrid contribution -1.378 0.487 -1.370 2.003 sum -3.083 -1.099 -20.493 20.752 Atomic orbital electron populations 1.22532 0.94139 1.03697 1.03366 1.19204 0.93783 0.95839 0.80548 0.87253 1.56309 1.84472 1.19759 1.27917 1.05093 0.77220 0.74757 0.72260 1.93515 1.61369 1.60757 1.79890 1.93636 1.78963 1.58309 1.60742 1.30402 1.21568 1.11418 1.07776 1.18850 1.02387 0.86546 0.92458 1.20337 1.03098 1.21948 1.08778 0.89580 1.24891 0.97945 0.94275 0.94250 1.69873 1.36032 1.23361 1.22091 0.87202 0.85571 0.79685 0.79448 1.20269 1.21231 1.16845 1.23014 0.96919 1.00788 1.01255 1.23061 0.92097 1.05048 1.01271 1.24661 1.07911 0.96590 0.99956 1.20137 1.01983 1.01537 0.92861 1.20154 1.03090 0.92241 1.00816 1.25645 1.09273 1.00720 0.99717 1.84313 1.62876 1.04143 1.11435 0.90947 0.90754 0.91373 0.75485 0.86253 0.87125 0.92286 0.88801 0.89944 0.91011 0.89014 0.83911 0.84226 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.46 37.16 0.35 -1.52 16 2 C 0.22 2.69 3.24 -69.08 -0.22 2.46 16 3 H 0.11 1.31 7.46 -51.93 -0.39 0.92 16 4 N -1.13 -17.18 5.35 -5.88 -0.03 -17.21 16 5 S 2.61 52.15 5.26 -107.50 -0.57 51.59 16 6 O -0.97 -20.40 17.39 -57.54 -1.00 -21.40 16 7 O -0.93 -22.78 17.44 -57.54 -1.00 -23.79 16 8 C -0.58 -11.26 4.69 37.16 0.17 -11.08 16 9 C 0.00 0.01 0.78 -155.66 -0.12 -0.11 16 10 C -0.50 -13.97 8.53 -34.44 -0.29 -14.27 16 11 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 12 C 0.09 2.59 5.47 -17.82 -0.10 2.50 16 13 N -0.88 -26.64 13.96 55.43 0.77 -25.87 16 14 Si 0.85 20.32 24.85 -169.99 -4.22 16.10 16 15 H -0.28 -6.32 7.05 56.52 0.40 -5.92 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.25 -5.32 5.81 56.52 0.33 -4.99 16 18 C -0.18 -3.65 9.96 -26.70 -0.27 -3.92 16 19 C -0.18 -3.51 8.17 -26.70 -0.22 -3.73 16 20 C -0.17 -2.00 5.46 -36.00 -0.20 -2.20 16 21 C -0.13 -1.38 10.04 -41.21 -0.41 -1.80 16 22 C -0.13 -1.21 10.18 -41.21 -0.42 -1.63 16 23 C -0.22 -1.99 11.23 29.04 0.33 -1.67 16 24 S 0.11 1.17 22.37 -107.50 -2.41 -1.23 16 25 H 0.07 0.77 5.78 -51.93 -0.30 0.47 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.41 5.83 7.92 -34.46 -0.27 5.56 16 29 H 0.12 2.34 4.90 -51.92 -0.25 2.09 16 30 H 0.11 1.66 6.72 -51.92 -0.35 1.31 16 31 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -34.26 335.95 -9.79 -44.06 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.00 Total: 9.67 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: -1.40 Total: -36.97 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.74 Total: -43.08 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -2.00 Total: -45.19 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.22 Total: 16.10 kcal Atomic # 16 Polarization: 53.33 SS G_CDS: -2.97 Total: 50.36 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.26 -9.79 -44.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450986679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.527 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds