Wall clock time and date at job start Tue Mar 31 2020 10:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46791 * 2 1 4 4 N 1.46491 * 109.47409 * 120.00217 * 2 1 3 5 5 S 1.65598 * 120.00140 * 265.00432 * 4 2 1 6 6 O 1.42101 * 104.27895 * 308.92653 * 5 4 2 7 7 O 1.42101 * 104.28027 * 181.07080 * 5 4 2 8 8 C 1.81399 * 104.45215 * 64.99951 * 5 4 2 9 9 C 1.52996 * 109.47278 * 180.02562 * 8 5 4 10 10 C 1.50705 * 115.54919 * 294.15329 * 9 8 5 11 11 H 1.07999 * 119.99847 * 114.68308 * 10 9 8 12 12 C 1.37878 * 119.99736 * 294.41167 * 10 9 8 13 13 N 1.31519 * 119.99792 * 177.04001 * 12 10 9 14 14 Si 1.86798 * 120.00119 * 357.04354 * 12 10 9 15 15 H 1.48502 * 109.47259 * 93.43329 * 14 12 10 16 16 H 1.48497 * 109.46704 * 213.43087 * 14 12 10 17 17 H 1.48498 * 109.47152 * 333.42912 * 14 12 10 18 18 C 1.52997 * 117.50200 * 79.82577 * 9 8 5 19 19 C 1.53001 * 117.50268 * 148.48620 * 9 8 5 20 20 C 1.50705 * 109.47287 * 240.00574 * 2 1 3 21 21 C 1.33390 * 125.20075 * 99.99537 * 20 2 1 22 22 C 1.38429 * 114.91655 * 179.97438 * 21 20 2 23 23 C 1.33386 * 114.92170 * 0.02562 * 22 21 20 24 24 S 1.75884 * 125.20120 * 279.69421 * 20 2 1 25 25 H 1.08997 * 109.47353 * 299.99454 * 1 2 3 26 26 H 1.09004 * 109.47116 * 59.99989 * 1 2 3 27 27 H 1.09001 * 109.46708 * 179.97438 * 1 2 3 28 28 H 0.97001 * 120.00233 * 84.99693 * 4 2 1 29 29 H 1.09001 * 109.47227 * 60.01539 * 8 5 4 30 30 H 1.09005 * 109.46805 * 300.02110 * 8 5 4 31 31 H 0.96997 * 119.99734 * 180.02562 * 13 12 10 32 32 H 1.09004 * 117.49719 * 215.00437 * 18 9 8 33 33 H 1.09004 * 117.50053 * 0.02562 * 18 9 8 34 34 H 1.09003 * 117.49392 * 359.97216 * 19 9 8 35 35 H 1.08997 * 117.50290 * 144.96419 * 19 9 8 36 36 H 1.07992 * 122.54281 * 359.97438 * 21 20 2 37 37 H 1.07998 * 122.54012 * 180.02562 * 22 21 20 38 38 H 1.07995 * 125.20506 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1960 5 16 2.4122 0.1771 2.5504 6 8 3.2874 1.1906 2.0751 7 8 2.8607 -0.8030 3.4765 8 6 0.8407 0.8987 3.0985 9 6 1.0753 1.7347 4.3582 10 6 1.5026 0.9631 5.5802 11 1 2.4835 1.1216 6.0032 12 6 0.6390 0.0589 6.1614 13 7 1.0323 -0.6568 7.1923 14 14 -1.0895 -0.1496 5.4845 15 1 -1.1040 -1.2587 4.4970 16 1 -2.0218 -0.4648 6.5965 17 1 -1.5168 1.1088 4.8218 18 6 1.6470 3.1421 4.1758 19 6 0.1800 2.9569 4.5719 20 6 2.0324 -0.7103 -1.2306 21 6 2.4671 -0.1115 -2.3404 22 6 2.8812 -0.9714 -3.3431 23 6 2.7823 -2.2684 -3.0476 24 16 2.1422 -2.4555 -1.4201 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.1110 -1.6562 1.1948 29 1 0.1317 0.1007 3.3187 30 1 0.4384 1.5348 2.3100 31 1 0.4248 -1.2931 7.6009 32 1 2.3322 3.5099 4.9397 33 1 1.8556 3.4727 3.1583 34 1 -0.5758 3.1656 3.8147 35 1 -0.1003 3.2026 5.5962 36 1 2.4939 0.9627 -2.4486 37 1 3.2560 -0.6189 -4.2926 38 1 3.0573 -3.0795 -3.7055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450986679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:34 Heat of formation + Delta-G solvation = -36.165899 kcal Electronic energy + Delta-G solvation = -22581.119893 eV Core-core repulsion = 19256.474014 eV Total energy + Delta-G solvation = -3324.645879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.23985 -38.81848 -38.03839 -37.00082 -36.82500 -34.30185 -31.50496 -30.32655 -29.22976 -27.57910 -25.26519 -23.26916 -23.02092 -21.49345 -20.74806 -19.89209 -18.89873 -18.62000 -18.25124 -17.14359 -16.87473 -16.61314 -16.30479 -15.76957 -15.50676 -14.98558 -14.96225 -14.61626 -14.32122 -14.00583 -13.80272 -13.54827 -13.19450 -13.15983 -13.05501 -12.99396 -12.98771 -12.65281 -12.53182 -12.44393 -12.30181 -12.11491 -11.84117 -11.61211 -11.53873 -10.97521 -10.78006 -10.70984 -10.19719 -9.60772 -9.41174 -8.30191 -6.41268 -0.66997 0.07112 0.66982 1.10027 1.27814 1.36848 1.50325 1.78204 1.98996 2.35114 2.85255 2.96480 3.19014 3.34087 3.52401 3.77717 3.98732 4.12719 4.14953 4.27622 4.28987 4.34346 4.44306 4.58765 4.64069 4.72459 4.84784 4.91991 4.98890 5.03253 5.20805 5.23290 5.28978 5.38009 5.50555 5.59332 5.61894 5.91064 6.23417 6.67704 7.29276 8.86531 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.004510 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.594762 B = 6207.175251 C = 6456.331807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.207 3.793 3 H 0.116 0.884 4 N -1.118 6.118 5 S 2.616 3.384 6 O -0.984 6.984 7 O -0.990 6.990 8 C -0.573 4.573 9 C -0.037 4.037 10 C -0.508 4.508 11 H 0.027 0.973 12 C 0.027 3.973 13 N -0.941 5.941 14 Si 0.912 3.088 15 H -0.261 1.261 16 H -0.292 1.292 17 H -0.200 1.200 18 C -0.178 4.178 19 C -0.155 4.155 20 C -0.194 4.194 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.211 4.211 24 S 0.075 5.925 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.415 0.585 29 H 0.121 0.879 30 H 0.166 0.834 31 H 0.267 0.733 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 1.102 -24.540 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 H 0.133 0.867 4 N -0.878 5.878 5 S 2.713 3.287 6 O -0.974 6.974 7 O -0.980 6.980 8 C -0.705 4.705 9 C -0.040 4.040 10 C -0.545 4.545 11 H 0.046 0.954 12 C -0.173 4.173 13 N -0.579 5.579 14 Si 0.734 3.266 15 H -0.187 1.187 16 H -0.219 1.219 17 H -0.121 1.121 18 C -0.215 4.215 19 C -0.194 4.194 20 C -0.313 4.313 21 C -0.163 4.163 22 C -0.169 4.169 23 C -0.347 4.347 24 S 0.338 5.662 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.250 0.750 29 H 0.139 0.861 30 H 0.183 0.817 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.178 0.822 37 H 0.184 0.816 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.180 -0.021 -23.142 23.517 hybrid contribution -0.441 0.051 -0.198 0.487 sum -4.621 0.030 -23.341 23.794 Atomic orbital electron populations 1.22565 0.92318 1.04187 1.04699 1.19519 0.95296 0.95826 0.79445 0.86665 1.55890 1.84527 1.19757 1.27586 1.04592 0.77711 0.74126 0.72244 1.93478 1.62626 1.61192 1.80115 1.93561 1.80716 1.60229 1.63474 1.30258 1.20692 1.11893 1.07653 1.18770 1.05902 0.87529 0.91769 1.20465 1.00748 1.22586 1.10722 0.95445 1.25899 1.03146 0.93794 0.94413 1.70062 1.38077 1.25126 1.24659 0.86292 0.79090 0.82030 0.79215 1.18652 1.21855 1.12139 1.23128 0.97276 0.98428 1.02691 1.23152 0.92771 1.01202 1.02233 1.24628 1.09802 0.96645 1.00238 1.20480 1.00569 1.02687 0.92541 1.20475 1.02755 0.92009 1.01648 1.25978 1.08321 1.01684 0.98677 1.84434 1.63817 1.04557 1.13403 0.90599 0.88287 0.91437 0.74981 0.86052 0.81655 0.92414 0.90262 0.86772 0.86613 0.89993 0.82204 0.81627 0.79645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.46 71.98 0.68 -2.37 16 2 C 0.21 4.59 3.24 44.25 0.14 4.73 16 3 H 0.12 2.38 7.46 -2.39 -0.02 2.36 16 4 N -1.12 -32.69 5.35 -172.53 -0.92 -33.62 16 5 S 2.62 103.40 5.26 -56.49 -0.30 103.11 16 6 O -0.98 -40.94 17.39 -127.65 -2.22 -43.16 16 7 O -0.99 -50.89 17.44 -127.65 -2.23 -53.11 16 8 C -0.57 -20.44 4.69 71.98 0.34 -20.10 16 9 C -0.04 -1.61 0.78 -52.93 -0.04 -1.66 16 10 C -0.51 -29.12 8.53 25.60 0.22 -28.91 16 11 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 12 C 0.03 1.54 5.47 84.65 0.46 2.01 16 13 N -0.94 -60.26 13.96 21.45 0.30 -59.96 16 14 Si 0.91 40.92 24.85 68.60 1.70 42.63 16 15 H -0.26 -11.01 7.05 99.48 0.70 -10.31 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.20 -7.46 5.81 99.48 0.58 -6.88 16 18 C -0.18 -6.71 9.96 30.62 0.30 -6.40 16 19 C -0.15 -5.55 8.17 30.62 0.25 -5.30 16 20 C -0.19 -4.07 5.46 24.59 0.13 -3.94 16 21 C -0.13 -2.31 10.04 21.22 0.21 -2.09 16 22 C -0.14 -2.09 10.18 21.22 0.22 -1.87 16 23 C -0.21 -3.32 11.23 66.72 0.75 -2.57 16 24 S 0.07 1.51 22.37 -56.49 -1.26 0.25 16 25 H 0.08 1.22 5.78 -2.39 -0.01 1.21 16 26 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.42 11.69 7.92 -96.75 -0.77 10.92 16 29 H 0.12 4.34 4.90 -2.39 -0.01 4.33 16 30 H 0.17 3.99 6.72 -2.39 -0.02 3.98 16 31 H 0.27 15.92 8.31 -92.71 -0.77 15.14 16 32 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 33 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 34 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -80.37 335.95 -1.08 -81.44 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.18 Total: 30.88 kcal Atomic # 6 Polarization: -72.13 SS G_CDS: 3.67 Total: -68.46 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -0.62 Total: -93.57 kcal Atomic # 8 Polarization: -91.82 SS G_CDS: -4.45 Total: -96.27 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.70 Total: 42.63 kcal Atomic # 16 Polarization: 104.91 SS G_CDS: -1.56 Total: 103.35 kcal Total: -80.37 -1.08 -81.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450986679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.278 kcal (2) G-P(sol) polarization free energy of solvation -80.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds