Wall clock time and date at job start Tue Mar 31 2020 11:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00148 * 2 1 4 4 C 1.52995 * 109.47205 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47076 * 65.00286 * 4 3 2 6 6 C 1.37101 * 119.99893 * 269.72554 * 5 4 3 7 7 H 1.07992 * 120.00525 * 138.66208 * 6 5 4 8 8 C 1.38953 * 119.99893 * 318.66162 * 6 5 4 9 9 N 1.31412 * 119.99946 * 352.37207 * 8 6 5 10 10 Si 1.86793 * 120.00321 * 172.37175 * 8 6 5 11 11 H 1.48500 * 109.47282 * 59.99722 * 10 8 6 12 12 H 1.48496 * 109.47708 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47371 * 300.00057 * 10 8 6 14 14 C 1.34776 * 120.00373 * 89.99903 * 5 4 3 15 15 O 1.21296 * 119.99666 * 355.32884 * 14 5 4 16 16 C 1.50695 * 120.00219 * 175.32915 * 14 5 4 17 17 C 1.50703 * 109.47359 * 185.27137 * 16 14 5 18 18 C 1.38234 * 120.00636 * 264.72739 * 17 16 14 19 19 C 1.38225 * 120.04788 * 179.76775 * 18 17 16 20 20 C 1.38260 * 120.05913 * 0.50740 * 19 18 17 21 21 C 1.38281 * 120.01340 * 359.74391 * 20 19 18 22 22 Cl 1.73599 * 120.02527 * 179.97438 * 21 20 19 23 23 C 1.38397 * 120.00334 * 85.00033 * 17 16 14 24 24 F 1.35104 * 120.03475 * 0.02562 * 23 17 16 25 25 H 1.08998 * 109.46877 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47211 * 300.00513 * 1 2 3 27 27 H 1.09001 * 109.46673 * 60.00155 * 1 2 3 28 28 H 1.09003 * 109.47090 * 59.99729 * 3 2 1 29 29 H 1.08997 * 109.46989 * 299.99656 * 3 2 1 30 30 H 1.09000 * 109.47557 * 305.00262 * 4 3 2 31 31 H 1.09000 * 109.47538 * 184.99746 * 4 3 2 32 32 H 0.96997 * 120.00440 * 185.00826 * 9 8 6 33 33 H 1.09004 * 109.47373 * 305.27266 * 16 14 5 34 34 H 1.09008 * 109.47183 * 65.26992 * 16 14 5 35 35 H 1.07999 * 119.97527 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.96957 * 180.25188 * 19 18 17 37 37 H 1.08004 * 119.99010 * 179.77031 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1033 -0.7987 -1.3329 7 1 3.7724 -1.3195 -2.2192 8 6 4.6576 -1.5098 -0.2756 9 7 5.1963 -0.8683 0.7369 10 14 4.6368 -3.3775 -0.2933 11 1 5.3765 -3.8695 -1.4833 12 1 5.2846 -3.8916 0.9401 13 1 3.2324 -3.8565 -0.3506 14 6 4.2634 1.3329 -2.3200 15 8 4.0755 2.5303 -2.2737 16 6 4.8173 0.7050 -3.5730 17 6 5.1705 1.7854 -4.5625 18 6 4.2668 2.1458 -5.5445 19 6 4.5880 3.1399 -6.4495 20 6 5.8177 3.7682 -6.3807 21 6 6.7256 3.4062 -5.4025 22 17 8.2699 4.1944 -5.3162 23 6 6.4020 2.4131 -4.4916 24 9 7.2882 2.0574 -3.5359 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1765 0.0902 32 1 5.6473 -1.3622 1.4394 33 1 5.7108 0.1311 -3.3274 34 1 4.0689 0.0433 -4.0092 35 1 3.3078 1.6525 -5.6026 36 1 3.8794 3.4233 -7.2138 37 1 6.0689 4.5423 -7.0907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457201415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:43 Heat of formation + Delta-G solvation = -118.063757 kcal Electronic energy + Delta-G solvation = -24374.108316 eV Core-core repulsion = 20477.654196 eV Total energy + Delta-G solvation = -3896.454119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.97651 -40.82091 -39.80397 -38.51156 -37.58038 -36.55617 -33.81372 -33.45285 -31.37891 -31.09265 -28.49530 -27.25854 -26.41995 -24.04609 -23.74713 -22.63960 -20.96893 -18.98413 -18.47818 -17.99104 -17.79214 -17.11691 -17.08261 -16.84037 -16.67805 -16.10483 -16.02190 -15.72514 -15.42376 -15.18022 -14.54024 -14.36245 -14.28226 -13.94350 -13.53717 -13.50055 -13.17481 -12.98640 -12.75343 -12.63066 -12.47206 -12.39911 -12.38138 -12.32186 -12.07806 -11.90321 -11.77474 -10.97535 -10.54755 -10.41645 -9.75993 -9.65390 -9.37533 -8.16837 -6.03452 0.01719 0.11056 0.97205 1.47074 1.51964 1.58939 2.02467 2.36355 2.46663 2.99709 3.09158 3.15327 3.23625 3.60157 3.88261 4.11950 4.22899 4.27138 4.28523 4.38633 4.51254 4.55513 4.63225 4.64597 4.69884 4.79025 4.83039 4.89307 5.00841 5.02343 5.22924 5.37945 5.40718 5.62497 5.77800 6.08165 6.44643 6.48161 7.20474 7.61752 8.03757 8.83599 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.004286 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.941919 B = 6530.812693 C = 7301.950584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.069 3.931 4 C 0.102 3.898 5 N -0.440 5.440 6 C -0.327 4.327 7 H 0.094 0.906 8 C 0.005 3.995 9 N -0.905 5.905 10 Si 0.983 3.017 11 H -0.262 1.262 12 H -0.288 1.288 13 H -0.268 1.268 14 C 0.464 3.536 15 O -0.630 6.630 16 C -0.076 4.076 17 C -0.092 4.092 18 C -0.081 4.081 19 C -0.102 4.102 20 C -0.086 4.086 21 C -0.085 4.085 22 Cl -0.059 7.059 23 C 0.083 3.917 24 F -0.147 7.147 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.109 0.891 31 H 0.049 0.951 32 H 0.269 0.731 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.156 0.844 36 H 0.182 0.818 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 3.878 -12.470 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.009 4.009 4 C -0.022 4.022 5 N -0.158 5.158 6 C -0.455 4.455 7 H 0.112 0.888 8 C -0.196 4.196 9 N -0.544 5.544 10 Si 0.807 3.193 11 H -0.187 1.187 12 H -0.213 1.213 13 H -0.193 1.193 14 C 0.254 3.746 15 O -0.518 6.518 16 C -0.115 4.115 17 C -0.093 4.093 18 C -0.099 4.099 19 C -0.120 4.120 20 C -0.104 4.104 21 C -0.112 4.112 22 Cl -0.030 7.030 23 C 0.064 3.936 24 F -0.126 7.126 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.173 0.827 36 H 0.199 0.801 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.638 4.275 -12.148 13.382 hybrid contribution 0.477 -0.585 1.011 1.261 sum -3.161 3.690 -11.137 12.151 Atomic orbital electron populations 1.22882 0.80813 1.03267 1.00181 1.88092 1.20276 1.27641 1.95260 1.22748 0.94556 0.84563 0.99042 1.21604 0.91482 0.97582 0.91493 1.43501 1.56309 1.06505 1.09441 1.19565 1.40272 0.81040 1.04625 0.88823 1.26192 0.94188 1.04212 0.95034 1.69732 1.35154 1.37719 1.11763 0.85142 0.78677 0.77703 0.77752 1.18700 1.21324 1.19281 1.20852 0.80561 0.86183 0.86993 1.90500 1.59968 1.16373 1.85008 1.20273 1.03150 0.96289 0.91824 1.19727 0.92647 0.98765 0.98187 1.21363 0.98717 0.97118 0.92713 1.21582 0.96372 0.94582 0.99456 1.21343 0.92342 1.00356 0.96375 1.21148 0.91036 0.98478 1.00547 1.98353 1.27554 1.79046 1.98089 1.17681 0.89028 0.97988 0.88949 1.91472 1.67547 1.90982 1.62566 0.88844 0.93260 0.94098 0.92128 0.95118 0.87382 0.93272 0.92112 0.89424 0.86413 0.82682 0.80091 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.39 -16.72 10.19 -148.98 -1.52 -18.24 16 3 C 0.07 2.91 6.28 71.98 0.45 3.36 16 4 C 0.10 5.13 5.38 86.38 0.46 5.59 16 5 N -0.44 -22.59 2.50 -635.55 -1.59 -24.17 16 6 C -0.33 -16.57 8.00 84.04 0.67 -15.90 16 7 H 0.09 4.44 7.33 -2.91 -0.02 4.42 16 8 C 0.00 0.25 5.24 84.93 0.44 0.70 16 9 N -0.90 -49.29 10.93 21.66 0.24 -49.05 16 10 Si 0.98 40.51 29.56 68.60 2.03 42.53 16 11 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 12 H -0.29 -11.88 7.11 99.48 0.71 -11.18 16 13 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 14 C 0.46 22.84 7.61 87.66 0.67 23.51 16 15 O -0.63 -33.61 15.67 -3.08 -0.05 -33.66 16 16 C -0.08 -3.04 4.35 29.10 0.13 -2.92 16 17 C -0.09 -3.25 4.39 -19.83 -0.09 -3.34 16 18 C -0.08 -2.15 9.68 22.27 0.22 -1.94 16 19 C -0.10 -2.05 10.04 22.27 0.22 -1.83 16 20 C -0.09 -1.90 9.83 22.29 0.22 -1.68 16 21 C -0.08 -2.56 6.33 22.36 0.14 -2.42 16 22 Cl -0.06 -1.68 28.62 -2.72 -0.08 -1.76 16 23 C 0.08 3.11 7.22 22.39 0.16 3.27 16 24 F -0.15 -6.35 16.14 44.97 0.73 -5.62 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.11 5.89 5.25 -2.39 -0.01 5.88 16 31 H 0.05 2.55 7.49 -2.39 -0.02 2.53 16 32 H 0.27 13.98 8.32 -92.71 -0.77 13.21 16 33 H 0.09 3.74 7.67 -2.39 -0.02 3.72 16 34 H 0.12 4.05 7.77 -2.38 -0.02 4.03 16 35 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -68.13 338.99 5.80 -62.33 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 1.09 Total: 19.23 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 4.95 Total: 8.41 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -1.35 Total: -73.23 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -1.57 Total: -51.90 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.73 Total: -5.62 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -68.13 5.80 -62.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.734 kcal (2) G-P(sol) polarization free energy of solvation -68.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds