Wall clock time and date at job start Tue Mar 31 2020 11:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 114.00129 * 2 1 4 4 C 1.52992 * 109.47200 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47216 * 64.99955 * 4 3 2 6 6 C 1.37092 * 120.00188 * 269.99747 * 5 4 3 7 7 H 1.08006 * 120.00090 * 138.65339 * 6 5 4 8 8 C 1.38948 * 120.00440 * 318.66022 * 6 5 4 9 9 N 1.31405 * 120.00602 * 160.62674 * 8 6 5 10 10 Si 1.86804 * 119.99572 * 340.62709 * 8 6 5 11 11 H 1.48494 * 109.47286 * 95.50528 * 10 8 6 12 12 H 1.48501 * 109.46737 * 215.50502 * 10 8 6 13 13 H 1.48501 * 109.47119 * 335.50021 * 10 8 6 14 14 C 1.34778 * 119.99913 * 90.00278 * 5 4 3 15 15 O 1.21299 * 119.99655 * 5.18042 * 14 5 4 16 16 C 1.50698 * 120.00085 * 185.18838 * 14 5 4 17 17 C 1.50701 * 109.47117 * 185.40528 * 16 14 5 18 18 C 1.38245 * 119.98139 * 265.68519 * 17 16 14 19 19 C 1.38179 * 120.04008 * 179.97438 * 18 17 16 20 20 C 1.38493 * 119.99975 * 0.02562 * 19 18 17 21 21 F 1.35104 * 120.01971 * 179.97438 * 20 19 18 22 22 C 1.38417 * 119.95986 * 359.70203 * 20 19 18 23 23 C 1.38331 * 119.95908 * 0.55556 * 22 20 19 24 24 Cl 1.73606 * 119.99741 * 179.74023 * 23 22 20 25 25 H 1.08999 * 109.47066 * 59.99753 * 1 2 3 26 26 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46698 * 299.99886 * 1 2 3 28 28 H 1.08996 * 109.46857 * 60.00311 * 3 2 1 29 29 H 1.08999 * 109.46869 * 300.00787 * 3 2 1 30 30 H 1.09006 * 109.47637 * 305.00413 * 4 3 2 31 31 H 1.09004 * 109.47142 * 184.99844 * 4 3 2 32 32 H 0.96994 * 120.00754 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46838 * 65.40588 * 16 14 5 34 34 H 1.08994 * 109.46989 * 305.40474 * 16 14 5 35 35 H 1.08001 * 119.98445 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.00152 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.01720 * 180.31802 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0970 -0.7985 -1.3370 7 1 3.7648 -1.3164 -2.2247 8 6 4.6470 -1.5138 -0.2804 9 7 4.4281 -2.8053 -0.1766 10 14 5.6979 -0.6393 0.9926 11 1 4.8568 -0.2695 2.1592 12 1 6.7908 -1.5415 1.4364 13 1 6.2815 0.5881 0.3941 14 6 4.2616 1.3338 -2.3218 15 8 4.2455 2.5425 -2.2208 16 6 4.6010 0.6924 -3.6426 17 6 5.0061 1.7574 -4.6288 18 6 4.0676 2.2942 -5.4903 19 6 4.4376 3.2712 -6.3948 20 6 5.7495 3.7128 -6.4389 21 9 6.1119 4.6676 -7.3234 22 6 6.6880 3.1794 -5.5725 23 6 6.3169 2.1976 -4.6714 24 17 7.4946 1.5231 -3.5889 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5682 0.8409 31 1 3.9785 2.1766 0.0889 32 1 4.8118 -3.3046 0.5612 33 1 3.7295 0.1586 -4.0218 34 1 5.4247 -0.0080 -3.5053 35 1 3.0445 1.9498 -5.4565 36 1 3.7038 3.6904 -7.0672 37 1 7.7102 3.5267 -5.6026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457205958.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:38 Heat of formation + Delta-G solvation = -110.652678 kcal Electronic energy + Delta-G solvation = -24319.085008 eV Core-core repulsion = 20422.952257 eV Total energy + Delta-G solvation = -3896.132751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.96266 -41.08231 -39.91554 -38.53304 -37.45986 -36.60510 -33.92888 -33.64601 -31.97069 -31.13497 -28.29259 -27.19850 -26.41752 -24.20691 -24.13142 -22.70650 -20.82576 -19.01347 -18.68392 -18.14940 -17.81822 -17.48544 -17.03569 -16.66402 -16.60268 -16.13314 -16.10036 -15.69935 -15.53380 -15.30651 -14.74529 -14.73296 -14.48149 -14.34037 -13.86353 -13.54192 -13.28937 -13.07680 -12.91166 -12.73840 -12.60426 -12.38394 -12.33476 -12.19839 -11.95342 -11.87057 -11.71198 -11.06394 -10.59192 -10.41770 -9.99400 -9.65952 -9.53339 -8.39924 -6.01741 -0.03434 0.06969 1.05344 1.19945 1.32192 1.42005 1.92377 2.23941 2.32886 2.72547 2.94950 3.17660 3.20310 3.65226 3.73750 3.92896 4.08137 4.13846 4.18164 4.32545 4.40568 4.44818 4.56138 4.56995 4.59891 4.66206 4.79797 4.81468 4.87893 4.88907 4.99651 5.07400 5.34965 5.52833 5.72400 6.16744 6.30723 6.43200 7.06480 7.48644 7.82794 8.74439 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.004826 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.973206 B = 5800.221013 C = 6842.842267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.062 3.938 4 C 0.092 3.908 5 N -0.468 5.468 6 C -0.315 4.315 7 H 0.084 0.916 8 C 0.041 3.959 9 N -0.896 5.896 10 Si 0.910 3.090 11 H -0.264 1.264 12 H -0.289 1.289 13 H -0.268 1.268 14 C 0.490 3.510 15 O -0.608 6.608 16 C -0.086 4.086 17 C -0.067 4.067 18 C -0.069 4.069 19 C -0.137 4.137 20 C 0.097 3.903 21 F -0.136 7.136 22 C -0.149 4.149 23 C -0.013 4.013 24 Cl -0.066 7.066 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.274 0.726 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.171 0.829 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 9.216 -8.122 12.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.015 4.015 4 C -0.031 4.031 5 N -0.189 5.189 6 C -0.443 4.443 7 H 0.101 0.899 8 C -0.163 4.163 9 N -0.533 5.533 10 Si 0.737 3.263 11 H -0.191 1.191 12 H -0.215 1.215 13 H -0.192 1.192 14 C 0.281 3.719 15 O -0.494 6.494 16 C -0.125 4.125 17 C -0.069 4.069 18 C -0.087 4.087 19 C -0.155 4.155 20 C 0.078 3.922 21 F -0.114 7.114 22 C -0.169 4.169 23 C -0.040 4.040 24 Cl -0.037 7.037 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.178 0.822 36 H 0.189 0.811 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.874 9.424 -7.880 12.426 hybrid contribution 0.649 0.131 0.971 1.175 sum -1.225 9.554 -6.908 11.854 Atomic orbital electron populations 1.22856 0.80560 1.03088 1.00408 1.88169 1.20514 1.27452 1.95332 1.22785 0.93093 0.85113 1.00554 1.21811 0.94254 0.98672 0.88319 1.43686 1.58735 1.06465 1.10023 1.18723 1.40351 0.79788 1.05445 0.89858 1.25649 0.96644 0.95343 0.98669 1.69795 1.42535 1.08676 1.32337 0.86383 0.79791 0.79310 0.80821 1.19061 1.21549 1.19228 1.20588 0.78210 0.86303 0.86802 1.90541 1.57783 1.15080 1.86024 1.20445 1.04600 0.96615 0.90840 1.19595 0.91994 0.98149 0.97137 1.21091 0.99882 0.94810 0.92931 1.21459 0.94811 0.98269 1.00978 1.17485 0.93799 0.90192 0.90766 1.91504 1.92439 1.61329 1.66174 1.21003 1.01661 0.97821 0.96391 1.20604 0.90610 0.98044 0.94767 1.98385 1.57497 1.84184 1.63679 0.93738 0.89571 0.92867 0.90867 0.93571 0.92093 0.89365 0.91591 0.87027 0.88236 0.82216 0.81121 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -16.06 10.18 -148.98 -1.52 -17.58 16 3 C 0.06 2.30 6.28 71.98 0.45 2.75 16 4 C 0.09 3.96 4.66 86.38 0.40 4.36 16 5 N -0.47 -21.70 2.09 -635.52 -1.33 -23.03 16 6 C -0.32 -16.06 8.39 84.04 0.70 -15.35 16 7 H 0.08 4.47 7.52 -2.91 -0.02 4.45 16 8 C 0.04 2.16 5.33 84.93 0.45 2.61 16 9 N -0.90 -49.93 13.96 21.66 0.30 -49.63 16 10 Si 0.91 42.52 25.01 68.60 1.72 44.24 16 11 H -0.26 -11.79 6.73 99.48 0.67 -11.12 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 14 C 0.49 21.35 7.61 87.66 0.67 22.01 16 15 O -0.61 -28.13 15.60 -3.09 -0.05 -28.18 16 16 C -0.09 -3.15 4.03 29.10 0.12 -3.03 16 17 C -0.07 -2.16 4.38 -19.84 -0.09 -2.25 16 18 C -0.07 -1.77 9.68 22.26 0.22 -1.55 16 19 C -0.14 -3.03 10.03 22.32 0.22 -2.81 16 20 C 0.10 2.40 7.30 22.37 0.16 2.57 16 21 F -0.14 -3.24 17.27 44.97 0.78 -2.46 16 22 C -0.15 -4.03 9.81 22.33 0.22 -3.81 16 23 C -0.01 -0.43 6.31 22.32 0.14 -0.28 16 24 Cl -0.07 -2.26 27.38 -2.72 -0.07 -2.33 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 2.75 3.56 -2.38 -0.01 2.74 16 31 H 0.09 3.64 7.36 -2.38 -0.02 3.63 16 32 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.11 3.72 7.97 -2.39 -0.02 3.70 16 34 H 0.10 3.87 6.81 -2.39 -0.02 3.85 16 35 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -63.05 333.65 5.81 -57.24 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.06 Total: 14.46 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 4.92 Total: 7.27 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -1.03 Total: -72.66 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.56 Total: -45.76 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.72 Total: 44.24 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.07 Total: -2.33 kcal Total: -63.05 5.81 -57.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457205958.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.411 kcal (2) G-P(sol) polarization free energy of solvation -63.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds