Wall clock time and date at job start Tue Mar 31 2020 10:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00296 * 2 1 4 4 N 1.46498 * 109.46921 * 125.00286 * 3 2 1 5 5 C 1.46495 * 120.00211 * 274.99986 * 4 3 2 6 6 C 1.50699 * 109.47238 * 275.00385 * 5 4 3 7 7 H 1.07996 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99814 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00211 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99867 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47132 * 89.99602 * 10 8 6 12 12 H 1.48499 * 109.47129 * 209.99798 * 10 8 6 13 13 H 1.48502 * 109.47063 * 329.99593 * 10 8 6 14 14 S 1.65606 * 119.99829 * 95.00332 * 4 3 2 15 15 O 1.42094 * 104.27817 * 333.92669 * 14 4 3 16 16 O 1.42106 * 104.27580 * 206.06900 * 14 4 3 17 17 C 1.81396 * 104.45103 * 89.99885 * 14 4 3 18 18 C 1.52997 * 109.47360 * 179.97438 * 17 14 4 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 14 20 20 C 1.33393 * 125.20065 * 89.99722 * 19 18 17 21 21 C 1.38425 * 114.92007 * 179.97438 * 20 19 18 22 22 C 1.33389 * 114.92135 * 0.02562 * 21 20 19 23 23 S 1.75882 * 125.20483 * 269.69576 * 19 18 17 24 24 H 1.07999 * 119.99805 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00273 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.99842 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46753 * 5.00213 * 3 2 1 28 28 H 1.09002 * 109.47054 * 245.00602 * 3 2 1 29 29 H 1.09000 * 109.47174 * 35.00362 * 5 4 3 30 30 H 1.09001 * 109.47282 * 154.99816 * 5 4 3 31 31 H 0.96996 * 119.99905 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47134 * 59.99751 * 17 14 4 33 33 H 1.08998 * 109.46953 * 300.00489 * 17 14 4 34 34 H 1.09002 * 109.47153 * 59.99820 * 18 17 14 35 35 H 1.09001 * 109.46832 * 300.00011 * 18 17 14 36 36 H 1.08005 * 122.54147 * 359.96383 * 20 19 18 37 37 H 1.07995 * 122.53675 * 180.02562 * 21 20 19 38 38 H 1.07999 * 125.20519 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5286 1.7619 2.4522 6 6 2.5993 3.2644 2.5450 7 1 2.9555 3.8412 1.7043 8 6 2.2102 3.9026 3.7036 9 7 1.7769 3.2002 4.7275 10 14 2.2985 5.7649 3.8188 11 1 1.0137 6.3508 3.3590 12 1 2.5477 6.1624 5.2278 13 1 3.4043 6.2621 2.9613 14 16 4.5713 0.8757 0.9171 15 8 4.5315 -0.0150 -0.1893 16 8 4.9849 0.4304 2.2017 17 6 5.4291 2.4098 0.4687 18 6 6.9136 2.1167 0.2424 19 6 7.6261 3.3911 -0.1308 20 6 8.1891 4.2384 0.7321 21 6 8.7883 5.3453 0.1560 22 6 8.7115 5.3972 -1.1746 23 16 7.8491 3.9851 -1.7712 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6212 1.4026 -0.9314 29 1 1.4985 1.4369 2.5983 30 1 3.1614 1.3201 3.2220 31 1 1.5035 3.6492 5.5427 32 1 5.3212 3.1355 1.2748 33 1 4.9949 2.8150 -0.4453 34 1 7.0219 1.3909 -0.5636 35 1 7.3475 1.7118 1.1567 36 1 8.1780 4.0733 1.7994 37 1 9.2807 6.1089 0.7398 38 1 9.1209 6.1834 -1.7917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490082450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:10 Heat of formation + Delta-G solvation = -21.462789 kcal Electronic energy + Delta-G solvation = -22036.004242 eV Core-core repulsion = 18711.995937 eV Total energy + Delta-G solvation = -3324.008305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.04762 -36.65043 -36.33035 -35.36746 -33.97153 -33.21888 -31.90786 -28.70079 -27.51088 -24.99792 -24.77170 -22.69683 -22.02048 -19.67320 -19.31786 -18.23812 -17.42702 -16.67771 -16.49833 -16.02196 -15.78807 -15.50050 -14.88223 -14.47575 -14.17535 -13.65092 -13.43220 -13.08721 -12.96421 -12.58215 -12.49313 -12.31423 -12.24395 -12.11619 -11.75967 -11.54530 -11.29186 -11.22681 -11.18473 -10.89931 -10.80062 -10.75889 -10.54815 -10.35282 -10.05791 -9.81129 -9.03649 -8.71958 -8.53810 -8.53186 -8.07009 -6.14871 -4.22773 0.76249 0.98179 1.56000 1.92761 2.62506 2.69892 3.21854 3.29379 3.30288 3.40332 4.28949 4.35047 4.63241 4.67269 4.89302 4.96046 5.01980 5.19209 5.28119 5.33071 5.48249 5.52725 5.58621 5.67303 5.68827 6.03993 6.09575 6.14531 6.24058 6.31824 6.42713 6.46294 7.00368 7.08649 7.36066 7.41039 7.61691 7.81588 8.10372 8.82071 9.43960 10.92858 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.005426 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.474506 B = 5158.824097 C = 6913.000998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C 0.157 3.843 4 N -0.979 5.979 5 C 0.244 3.756 6 C -0.548 4.548 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.886 5.886 10 Si 0.892 3.108 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 S 2.609 3.391 15 O -0.974 6.974 16 O -0.952 6.952 17 C -0.632 4.632 18 C -0.040 4.040 19 C -0.158 4.158 20 C -0.139 4.139 21 C -0.129 4.129 22 C -0.219 4.219 23 S 0.092 5.908 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.265 0.735 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.098 1.244 -11.524 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C 0.031 3.969 4 N -0.817 5.817 5 C 0.122 3.878 6 C -0.587 4.587 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.524 5.524 10 Si 0.719 3.281 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 S 2.701 3.299 15 O -0.964 6.964 16 O -0.942 6.942 17 C -0.759 4.759 18 C -0.080 4.080 19 C -0.276 4.276 20 C -0.169 4.169 21 C -0.160 4.160 22 C -0.355 4.355 23 S 0.355 5.645 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.972 -0.097 -12.650 15.509 hybrid contribution 0.273 2.548 1.458 2.948 sum 9.246 2.451 -11.192 14.723 Atomic orbital electron populations 1.23767 0.95824 1.01522 1.01661 1.23437 0.96244 0.99387 0.98695 1.20193 0.93163 0.95568 0.88017 1.57376 1.23897 1.82788 1.17623 1.19247 0.97300 0.94568 0.76716 1.21577 1.45296 0.92071 0.99769 0.92021 1.24942 0.94864 0.98389 0.95506 1.69933 1.42723 1.35627 1.04085 0.86604 0.78520 0.85474 0.77484 1.20546 1.21027 1.19783 1.04901 0.74444 0.76434 0.74082 1.93531 1.86333 1.60834 1.55740 1.93574 1.82030 1.79123 1.39511 1.30873 1.05842 1.26052 1.13173 1.19841 0.91365 0.93512 1.03302 1.24269 1.05783 1.01861 0.95689 1.20236 1.00704 0.94658 1.01310 1.20182 1.02314 0.99421 0.94087 1.25575 1.08078 1.03045 0.98790 1.84239 1.54822 1.17439 1.08036 0.88456 0.88932 0.87427 0.89583 0.90856 0.94073 0.92717 0.92506 0.83473 0.85542 0.89628 0.88428 0.83811 0.84272 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 14.32 29.02 0.42 -2.37 16 2 C -0.16 -2.60 9.84 -36.02 -0.35 -2.96 16 3 C 0.16 2.69 5.70 -5.19 -0.03 2.66 16 4 N -0.98 -19.54 2.68 -116.95 -0.31 -19.86 16 5 C 0.24 5.92 5.41 -5.20 -0.03 5.89 16 6 C -0.55 -13.98 9.38 -34.44 -0.32 -14.30 16 7 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 10 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 14 S 2.61 48.30 5.37 -107.50 -0.58 47.73 16 15 O -0.97 -18.50 16.99 -57.54 -0.98 -19.48 16 16 O -0.95 -20.93 16.53 -57.54 -0.95 -21.88 16 17 C -0.63 -9.66 6.16 37.16 0.23 -9.43 16 18 C -0.04 -0.53 5.72 -27.88 -0.16 -0.69 16 19 C -0.16 -2.08 5.76 -36.00 -0.21 -2.29 16 20 C -0.14 -1.77 10.05 -41.21 -0.41 -2.18 16 21 C -0.13 -1.45 10.18 -41.21 -0.42 -1.87 16 22 C -0.22 -2.33 11.23 29.04 0.33 -2.00 16 23 S 0.09 1.07 23.33 -107.50 -2.51 -1.44 16 24 H 0.10 1.37 7.84 -52.49 -0.41 0.96 16 25 H 0.09 1.19 8.06 -52.49 -0.42 0.76 16 26 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.09 1.46 7.76 -51.93 -0.40 1.06 16 28 H 0.07 1.08 7.61 -51.93 -0.40 0.69 16 29 H 0.04 1.06 8.11 -51.93 -0.42 0.64 16 30 H 0.05 1.47 6.82 -51.93 -0.35 1.11 16 31 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.15 2.41 8.14 -51.92 -0.42 1.99 16 33 H 0.13 1.72 8.14 -51.93 -0.42 1.29 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.14 1.70 8.06 -52.48 -0.42 1.27 16 37 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -31.35 355.36 -10.65 -42.01 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.33 Total: 4.31 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -1.06 Total: -27.85 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.42 Total: -44.13 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.93 Total: -41.36 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 49.37 SS G_CDS: -3.09 Total: 46.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.35 -10.65 -42.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490082450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.543 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds