Wall clock time and date at job start Tue Mar 31 2020 11:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46714 * 146.63288 * 3 2 1 5 5 C 1.36959 * 119.99911 * 263.28609 * 4 3 2 6 6 H 1.07995 * 120.00490 * 214.76747 * 5 4 3 7 7 C 1.38824 * 119.99862 * 34.77351 * 5 4 3 8 8 N 1.31521 * 120.00180 * 5.50448 * 7 5 4 9 9 Si 1.86799 * 119.99987 * 185.51162 * 7 5 4 10 10 H 1.48494 * 109.47322 * 59.99884 * 9 7 5 11 11 H 1.48503 * 109.47292 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46946 * 299.99734 * 9 7 5 13 13 C 1.34775 * 120.00194 * 83.29078 * 4 3 2 14 14 O 1.21892 * 119.99734 * 5.43464 * 13 4 3 15 15 C 1.41640 * 120.00222 * 185.43752 * 13 4 3 16 16 N 1.35811 * 126.47322 * 355.25964 * 15 13 4 17 17 C 1.30931 * 109.53308 * 180.02562 * 16 15 13 18 18 S 1.76198 * 125.14696 * 180.02562 * 17 16 15 19 19 C 1.81001 * 100.00362 * 359.97438 * 18 17 16 20 20 N 1.36766 * 109.70303 * 0.02562 * 17 16 15 21 21 C 1.36694 * 132.69344 * 180.28443 * 20 17 16 22 22 C 1.35040 * 120.58077 * 180.10654 * 21 20 17 23 23 C 1.40413 * 120.45472 * 359.57893 * 22 21 20 24 24 C 1.36417 * 119.59828 * 0.20672 * 23 22 21 25 25 C 1.37556 * 107.30636 * 359.97438 * 20 17 16 26 26 H 4.40637 * 5.51423 * 179.97438 * 4 1 2 27 27 H 1.08995 * 109.47680 * 26.63188 * 3 2 1 28 28 H 1.09004 * 109.46735 * 266.62877 * 3 2 1 29 29 H 0.97000 * 120.00110 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.46932 * 300.00141 * 19 18 17 31 31 H 1.09005 * 109.46883 * 59.99371 * 19 18 17 32 32 H 1.08997 * 109.47501 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.70937 * 359.95534 * 21 20 17 34 34 H 1.07998 * 119.77248 * 179.76402 * 22 21 20 35 35 H 1.07998 * 120.20141 * 180.23088 * 23 22 21 36 36 H 1.08007 * 120.38216 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1545 -0.7597 5 6 3.4928 1.0074 -2.0732 6 1 4.3128 1.5827 -2.4766 7 6 2.8024 0.1186 -2.8861 8 7 1.7372 -0.5012 -2.4269 9 14 3.3865 -0.1970 -4.6321 10 1 4.7689 -0.7385 -4.6014 11 1 2.4850 -1.1795 -5.2857 12 1 3.3703 1.0757 -5.3971 13 6 3.2292 2.3607 -0.1661 14 8 3.0051 2.4722 1.0269 15 6 3.5900 3.4986 -0.9283 16 7 3.9538 3.5117 -2.2368 17 6 4.2181 4.7399 -2.6054 18 16 4.7286 5.2268 -4.2200 19 6 4.7438 3.6153 -5.0442 20 7 4.0381 5.5877 -1.5474 21 6 4.1741 6.9410 -1.4105 22 6 3.9296 7.5396 -0.2250 23 6 3.5227 6.7814 0.8846 24 6 3.3787 5.4305 0.7613 25 6 3.6401 4.8245 -0.4745 26 1 -1.0502 -0.0004 0.0000 27 1 3.0099 -0.9177 -0.4606 28 1 3.0093 0.0613 1.0260 29 1 1.2551 -1.1225 -2.9947 30 1 5.4475 2.9548 -4.5375 31 1 3.7455 3.1792 -5.0078 32 1 5.0472 3.7416 -6.0834 33 1 4.4822 7.5363 -2.2573 34 1 4.0448 8.6092 -0.1305 35 1 3.3247 7.2649 1.8298 36 1 3.0668 4.8350 1.6067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490962906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:15 Heat of formation + Delta-G solvation = 136.795296 kcal Electronic energy + Delta-G solvation = -23858.943600 eV Core-core repulsion = 20438.646681 eV Total energy + Delta-G solvation = -3420.296919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24581 -38.52785 -36.93800 -35.00498 -33.01746 -31.78836 -31.28081 -30.62699 -28.85466 -28.12941 -26.30647 -24.80231 -23.64453 -22.50860 -22.25596 -19.40986 -18.35815 -17.55724 -16.69409 -16.24380 -16.06031 -15.74078 -15.58322 -15.11602 -14.47594 -14.29381 -13.93056 -13.89662 -13.76091 -13.29870 -12.78963 -12.54331 -12.35343 -12.09994 -11.86844 -11.64682 -11.51084 -11.45405 -11.07109 -10.87493 -10.66572 -10.32970 -10.24805 -9.59772 -9.29818 -9.24525 -9.07946 -8.63845 -8.50223 -8.20503 -7.65755 -6.71696 -6.23317 -3.90526 0.94296 1.35116 1.44021 2.32240 2.85156 2.97496 3.18398 3.20455 3.22972 3.54768 3.94142 4.19491 4.39255 4.58405 4.60522 4.92620 4.96477 5.03428 5.17246 5.28127 5.33761 5.39158 5.50993 5.76793 5.79745 5.92091 6.14301 6.15657 6.30069 6.45704 6.65101 6.77474 6.84452 7.00201 7.25347 7.26677 7.63810 7.85020 8.06215 8.54906 9.11486 9.14275 9.48660 9.90091 10.73293 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.006852 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.729223 B = 4085.647245 C = 6089.946083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.092 4.092 3 C 0.242 3.758 4 N -0.416 5.416 5 C -0.309 4.309 6 H 0.122 0.878 7 C 0.034 3.966 8 N -0.857 5.857 9 Si 0.918 3.082 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.532 3.468 14 O -0.611 6.611 15 C 0.012 3.988 16 N -0.373 5.373 17 C 0.126 3.874 18 S -0.045 6.045 19 C -0.129 4.129 20 N -0.350 5.350 21 C 0.044 3.956 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.046 4.046 25 C 0.055 3.945 26 H 0.195 0.805 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.268 0.732 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 11.752 -1.859 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.094 4.094 3 C 0.119 3.881 4 N -0.132 5.132 5 C -0.438 4.438 6 H 0.139 0.861 7 C -0.172 4.172 8 N -0.494 5.494 9 Si 0.745 3.255 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.324 3.676 14 O -0.499 6.499 15 C -0.125 4.125 16 N -0.092 5.092 17 C -0.237 4.237 18 S 0.183 5.817 19 C -0.298 4.298 20 N -0.023 5.023 21 C -0.078 4.078 22 C -0.153 4.153 23 C -0.163 4.163 24 C -0.066 4.066 25 C -0.058 4.058 26 H 0.212 0.788 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.146 11.943 -2.521 13.246 hybrid contribution -0.581 -0.723 -0.267 0.965 sum 4.565 11.219 -2.788 12.429 Atomic orbital electron populations 1.24076 0.95211 1.02997 1.07087 1.22926 0.94156 0.97739 0.94558 1.18043 0.84465 0.90717 0.94856 1.43524 1.53663 1.04925 1.11094 1.20196 1.15376 1.24089 0.84181 0.86104 1.25562 0.94677 0.97283 0.99629 1.70009 1.15955 1.26756 1.36666 0.86175 0.78456 0.78346 0.82573 1.19878 1.21282 1.19223 1.15538 0.83572 0.81976 0.86538 1.90675 1.58874 1.85398 1.14966 1.19870 1.10315 0.91889 0.90453 1.71618 1.11817 1.14218 1.11551 1.25158 1.15979 0.87740 0.94801 1.84754 1.85680 1.14380 0.96916 1.23594 1.08279 0.95939 1.01993 1.42640 1.43518 1.06247 1.09900 1.21588 1.04228 0.81682 1.00284 1.20760 1.02035 1.00724 0.91806 1.21075 1.02518 0.93579 0.99158 1.20825 0.96001 0.94546 0.95209 1.19335 1.06335 0.91515 0.88649 0.78811 0.88518 0.91285 0.92080 0.88824 0.88292 0.88002 0.82264 0.83756 0.84690 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.51 19.15 29.55 0.57 -5.94 16 2 C -0.09 -2.34 11.04 -37.12 -0.41 -2.75 16 3 C 0.24 6.01 5.10 -6.83 -0.03 5.97 16 4 N -0.42 -10.97 2.56 -121.18 -0.31 -11.28 16 5 C -0.31 -8.03 8.04 -15.04 -0.12 -8.15 16 6 H 0.12 3.09 5.62 -52.49 -0.30 2.80 16 7 C 0.03 0.87 5.16 -17.47 -0.09 0.78 16 8 N -0.86 -22.77 9.33 55.49 0.52 -22.26 16 9 Si 0.92 19.57 29.56 -169.99 -5.02 14.55 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.27 -5.37 6.25 56.52 0.35 -5.02 16 13 C 0.53 13.92 7.36 -14.96 -0.11 13.81 16 14 O -0.61 -16.41 15.24 5.02 0.08 -16.33 16 15 C 0.01 0.29 6.62 -84.06 -0.56 -0.27 16 16 N -0.37 -8.39 7.07 -10.49 -0.07 -8.47 16 17 C 0.13 2.41 8.02 -88.42 -0.71 1.70 16 18 S -0.05 -0.67 22.80 -107.50 -2.45 -3.12 16 19 C -0.13 -1.88 9.97 101.05 1.01 -0.88 16 20 N -0.35 -6.27 2.96 -60.85 -0.18 -6.45 16 21 C 0.04 0.59 10.83 -16.52 -0.18 0.41 16 22 C -0.13 -1.51 9.98 -39.90 -0.40 -1.91 16 23 C -0.14 -1.83 10.09 -39.42 -0.40 -2.23 16 24 C -0.05 -0.79 9.68 -39.54 -0.38 -1.18 16 25 C 0.05 1.12 6.70 -83.85 -0.56 0.56 16 26 H 0.19 3.82 7.80 -54.08 -0.42 3.40 16 27 H 0.10 2.38 7.18 -51.93 -0.37 2.01 16 28 H 0.07 1.63 7.56 -51.93 -0.39 1.23 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 30 H 0.09 1.44 8.14 -51.91 -0.42 1.01 16 31 H 0.10 1.68 7.28 -51.91 -0.38 1.30 16 32 H 0.10 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.16 2.82 7.10 -52.48 -0.37 2.45 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -31.97 329.03 -8.40 -40.37 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.53 Total: 8.09 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.38 Total: -0.07 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.05 Total: -48.45 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.08 Total: -16.33 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -2.45 Total: -3.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.97 -8.40 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.163 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds