Wall clock time and date at job start Tue Mar 31 2020 11:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46714 * 146.63288 * 3 2 1 5 5 C 1.36959 * 119.99911 * 263.28609 * 4 3 2 6 6 H 1.07995 * 120.00490 * 214.76747 * 5 4 3 7 7 C 1.38824 * 119.99862 * 34.77351 * 5 4 3 8 8 N 1.31521 * 120.00180 * 5.50448 * 7 5 4 9 9 Si 1.86799 * 119.99987 * 185.51162 * 7 5 4 10 10 H 1.48494 * 109.47322 * 59.99884 * 9 7 5 11 11 H 1.48503 * 109.47292 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46946 * 299.99734 * 9 7 5 13 13 C 1.34775 * 120.00194 * 83.29078 * 4 3 2 14 14 O 1.21892 * 119.99734 * 5.43464 * 13 4 3 15 15 C 1.41640 * 120.00222 * 185.43752 * 13 4 3 16 16 N 1.35811 * 126.47322 * 355.25964 * 15 13 4 17 17 C 1.30931 * 109.53308 * 180.02562 * 16 15 13 18 18 S 1.76198 * 125.14696 * 180.02562 * 17 16 15 19 19 C 1.81001 * 100.00362 * 359.97438 * 18 17 16 20 20 N 1.36766 * 109.70303 * 0.02562 * 17 16 15 21 21 C 1.36694 * 132.69344 * 180.28443 * 20 17 16 22 22 C 1.35040 * 120.58077 * 180.10654 * 21 20 17 23 23 C 1.40413 * 120.45472 * 359.57893 * 22 21 20 24 24 C 1.36417 * 119.59828 * 0.20672 * 23 22 21 25 25 C 1.37556 * 107.30636 * 359.97438 * 20 17 16 26 26 H 4.40637 * 5.51423 * 179.97438 * 4 1 2 27 27 H 1.08995 * 109.47680 * 26.63188 * 3 2 1 28 28 H 1.09004 * 109.46735 * 266.62877 * 3 2 1 29 29 H 0.97000 * 120.00110 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.46932 * 300.00141 * 19 18 17 31 31 H 1.09005 * 109.46883 * 59.99371 * 19 18 17 32 32 H 1.08997 * 109.47501 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.70937 * 359.95534 * 21 20 17 34 34 H 1.07998 * 119.77248 * 179.76402 * 22 21 20 35 35 H 1.07998 * 120.20141 * 180.23088 * 23 22 21 36 36 H 1.08007 * 120.38216 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1545 -0.7597 5 6 3.4928 1.0074 -2.0732 6 1 4.3128 1.5827 -2.4766 7 6 2.8024 0.1186 -2.8861 8 7 1.7372 -0.5012 -2.4269 9 14 3.3865 -0.1970 -4.6321 10 1 4.7689 -0.7385 -4.6014 11 1 2.4850 -1.1795 -5.2857 12 1 3.3703 1.0757 -5.3971 13 6 3.2292 2.3607 -0.1661 14 8 3.0051 2.4722 1.0269 15 6 3.5900 3.4986 -0.9283 16 7 3.9538 3.5117 -2.2368 17 6 4.2181 4.7399 -2.6054 18 16 4.7286 5.2268 -4.2200 19 6 4.7438 3.6153 -5.0442 20 7 4.0381 5.5877 -1.5474 21 6 4.1741 6.9410 -1.4105 22 6 3.9296 7.5396 -0.2250 23 6 3.5227 6.7814 0.8846 24 6 3.3787 5.4305 0.7613 25 6 3.6401 4.8245 -0.4745 26 1 -1.0502 -0.0004 0.0000 27 1 3.0099 -0.9177 -0.4606 28 1 3.0093 0.0613 1.0260 29 1 1.2551 -1.1225 -2.9947 30 1 5.4475 2.9548 -4.5375 31 1 3.7455 3.1792 -5.0078 32 1 5.0472 3.7416 -6.0834 33 1 4.4822 7.5363 -2.2573 34 1 4.0448 8.6092 -0.1305 35 1 3.3247 7.2649 1.8298 36 1 3.0668 4.8350 1.6067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490962906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:14 Heat of formation + Delta-G solvation = 118.873468 kcal Electronic energy + Delta-G solvation = -23859.720749 eV Core-core repulsion = 20438.646681 eV Total energy + Delta-G solvation = -3421.074068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.64006 -40.37436 -38.26187 -36.93316 -34.40759 -33.68856 -33.14274 -31.95786 -30.15263 -29.51763 -28.09146 -26.66119 -24.86102 -24.13891 -23.59260 -21.12470 -19.95650 -19.22674 -18.37363 -17.80745 -17.43027 -17.14342 -17.02575 -16.27923 -16.13508 -16.08943 -15.72050 -15.30667 -15.15703 -14.61001 -14.49331 -14.20680 -13.81477 -13.61463 -13.29875 -13.21852 -12.97344 -12.79766 -12.67148 -12.59870 -12.21935 -11.72841 -11.65923 -11.29036 -11.18631 -10.95136 -10.58380 -10.56466 -10.39576 -9.64043 -9.41767 -8.14145 -8.02124 -5.88487 -0.30960 0.09167 0.17416 1.10508 1.23709 1.43606 1.52091 1.54535 1.70398 2.07197 2.32477 2.37268 2.46411 2.78624 3.19787 3.26796 3.52892 3.70701 3.91031 3.94955 3.98071 4.19074 4.29295 4.30449 4.40270 4.68979 4.79005 4.82466 4.88300 4.97420 5.12972 5.28037 5.35388 5.39970 5.55227 5.69162 5.92956 6.03399 6.56135 6.61502 7.18883 7.21424 7.57380 7.97642 8.82986 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.006852 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.729223 B = 4085.647245 C = 6089.946083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.134 4.134 3 C 0.245 3.755 4 N -0.436 5.436 5 C -0.321 4.321 6 H 0.120 0.880 7 C -0.010 4.010 8 N -0.888 5.888 9 Si 0.976 3.024 10 H -0.266 1.266 11 H -0.291 1.291 12 H -0.248 1.248 13 C 0.528 3.472 14 O -0.636 6.636 15 C -0.071 4.071 16 N -0.398 5.398 17 C 0.104 3.896 18 S 0.012 5.988 19 C -0.137 4.137 20 N -0.350 5.350 21 C 0.039 3.961 22 C -0.120 4.120 23 C -0.085 4.085 24 C -0.106 4.106 25 C 0.069 3.931 26 H 0.231 0.769 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.264 0.736 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.198 0.802 34 H 0.205 0.795 35 H 0.180 0.820 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 16.324 -3.133 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.136 4.136 3 C 0.123 3.877 4 N -0.152 5.152 5 C -0.450 4.450 6 H 0.137 0.863 7 C -0.211 4.211 8 N -0.526 5.526 9 Si 0.800 3.200 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.172 1.172 13 C 0.321 3.679 14 O -0.526 6.526 15 C -0.205 4.205 16 N -0.117 5.117 17 C -0.259 4.259 18 S 0.238 5.762 19 C -0.306 4.306 20 N -0.023 5.023 21 C -0.082 4.082 22 C -0.140 4.140 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.047 4.047 26 H 0.248 0.752 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.160 0.840 33 H 0.215 0.785 34 H 0.222 0.778 35 H 0.197 0.803 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.908 16.505 -3.790 17.935 hybrid contribution -0.767 -1.693 0.263 1.877 sum 5.141 14.812 -3.527 16.070 Atomic orbital electron populations 1.24963 0.96218 1.01443 1.05561 1.23341 0.94985 0.99243 0.96022 1.17935 0.84814 0.90401 0.94591 1.43679 1.54698 1.05279 1.11500 1.20333 1.15759 1.24508 0.84384 0.86318 1.26355 0.94670 0.96863 1.03259 1.70168 1.17205 1.27550 1.37643 0.85274 0.78002 0.78717 0.78055 1.19069 1.21716 1.17245 1.16001 0.82574 0.82758 0.86537 1.90600 1.59997 1.86096 1.15953 1.19587 1.16589 0.92629 0.91736 1.71336 1.12346 1.16650 1.11346 1.25897 1.15817 0.87324 0.96880 1.84410 1.84933 1.13362 0.93454 1.23667 1.06496 0.96080 1.04318 1.42858 1.42854 1.07748 1.08805 1.22593 1.02994 0.79806 1.02764 1.21505 0.99309 1.03302 0.89876 1.21740 0.96069 0.91509 1.01389 1.20821 1.01087 0.96696 0.93976 1.19544 1.04133 0.90890 0.90150 0.75226 0.89343 0.91392 0.92631 0.89950 0.90846 0.84027 0.78495 0.77832 0.80314 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.83 19.15 74.32 1.42 -11.41 16 2 C -0.13 -7.23 11.04 31.13 0.34 -6.89 16 3 C 0.24 13.20 5.10 84.57 0.43 13.63 16 4 N -0.44 -24.71 2.56 -655.44 -1.68 -26.39 16 5 C -0.32 -17.74 8.04 84.03 0.68 -17.07 16 6 H 0.12 6.47 5.62 -2.91 -0.02 6.45 16 7 C -0.01 -0.52 5.16 84.88 0.44 -0.08 16 8 N -0.89 -49.57 9.33 21.65 0.20 -49.37 16 9 Si 0.98 41.35 29.56 68.60 2.03 43.38 16 10 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.25 -9.64 6.25 99.48 0.62 -9.02 16 13 C 0.53 29.79 7.36 85.08 0.63 30.41 16 14 O -0.64 -36.89 15.24 -4.97 -0.08 -36.96 16 15 C -0.07 -3.58 6.62 39.85 0.26 -3.32 16 16 N -0.40 -18.64 7.07 -187.09 -1.32 -19.96 16 17 C 0.10 3.93 8.02 179.58 1.44 5.37 16 18 S 0.01 0.31 22.80 -56.49 -1.29 -0.98 16 19 C -0.14 -3.79 9.97 113.37 1.13 -2.66 16 20 N -0.35 -11.98 2.96 -346.44 -1.03 -13.00 16 21 C 0.04 0.87 10.83 83.20 0.90 1.77 16 22 C -0.12 -1.95 9.98 22.06 0.22 -1.73 16 23 C -0.09 -1.81 10.09 22.37 0.23 -1.58 16 24 C -0.11 -3.60 9.68 22.30 0.22 -3.38 16 25 C 0.07 2.85 6.70 39.18 0.26 3.12 16 26 H 0.23 8.95 7.80 -4.41 -0.03 8.92 16 27 H 0.09 4.76 7.18 -2.39 -0.02 4.74 16 28 H 0.07 3.52 7.56 -2.38 -0.02 3.51 16 29 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.45 7.28 -2.39 -0.02 2.44 16 32 H 0.14 2.71 8.14 -2.40 -0.02 2.69 16 33 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.14 5.18 7.10 -2.91 -0.02 5.16 16 Total: -1.00 -78.44 329.03 6.47 -71.98 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 1.03 Total: 25.13 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 8.60 Total: 6.17 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -3.83 Total: -108.72 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.08 Total: -36.96 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.29 Total: -0.98 kcal Total: -78.44 6.47 -71.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.851 kcal (2) G-P(sol) polarization free energy of solvation -78.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds