Wall clock time and date at job start Tue Mar 31 2020 11:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48498 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47157 * 300.00125 * 3 2 1 6 6 H 1.48498 * 109.47125 * 59.99585 * 3 2 1 7 7 C 1.39024 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99781 * 159.97568 * 7 2 1 9 9 N 1.36891 * 120.00491 * 339.97549 * 7 2 1 10 10 C 1.34775 * 119.99939 * 134.16511 * 9 7 2 11 11 O 1.21610 * 119.99911 * 186.14593 * 10 9 7 12 12 C 1.47588 * 120.00264 * 6.13861 * 10 9 7 13 13 C 1.39691 * 120.14942 * 325.46379 * 12 10 9 14 14 C 1.38315 * 119.81902 * 180.02562 * 13 12 10 15 15 O 1.35944 * 119.94810 * 179.97438 * 14 13 12 16 16 C 1.42905 * 117.00507 * 180.02562 * 15 14 13 17 17 F 1.39907 * 109.46957 * 300.00889 * 16 15 14 18 18 F 1.39898 * 109.46520 * 59.99834 * 16 15 14 19 19 C 1.38916 * 120.10622 * 0.27647 * 14 13 12 20 20 C 1.38174 * 120.29544 * 359.44399 * 19 14 13 21 21 C 1.38285 * 120.18433 * 0.55412 * 20 19 14 22 22 F 1.35103 * 120.05651 * 179.75014 * 21 20 19 23 23 C 1.46504 * 119.99867 * 314.16786 * 9 7 2 24 24 C 1.52997 * 117.49643 * 1.03986 * 23 9 7 25 25 C 1.53003 * 117.49554 * 292.38313 * 23 9 7 26 26 H 0.97012 * 120.00200 * 5.05424 * 1 2 3 27 27 H 1.08005 * 120.08827 * 0.04063 * 13 12 10 28 28 H 1.08994 * 109.47683 * 180.02562 * 16 15 14 29 29 H 1.08004 * 119.85090 * 179.70089 * 19 14 13 30 30 H 1.08002 * 119.90710 * 180.27988 * 20 19 14 31 31 H 1.08993 * 115.54821 * 146.70601 * 23 9 7 32 32 H 1.09002 * 117.50335 * 0.02562 * 24 23 9 33 33 H 1.09008 * 117.49729 * 145.02184 * 24 23 9 34 34 H 1.09001 * 117.49062 * 214.97383 * 25 23 9 35 35 H 1.08995 * 117.50205 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8890 2.3965 -1.2125 6 1 1.8889 2.3965 1.2124 7 6 2.0088 -1.2040 0.0005 8 1 3.0399 -1.2324 -0.3197 9 7 1.3865 -2.3535 0.4070 10 6 1.5148 -3.4820 -0.3186 11 8 0.8742 -4.4721 -0.0215 12 6 2.4327 -3.5162 -1.4739 13 6 2.6084 -2.3779 -2.2642 14 6 3.4699 -2.4177 -3.3456 15 8 3.6425 -1.3116 -4.1169 16 6 4.5466 -1.4230 -5.2180 17 9 5.8207 -1.7534 -4.7438 18 9 4.0996 -2.4225 -6.0889 19 6 4.1542 -3.5881 -3.6486 20 6 3.9882 -4.7150 -2.8666 21 6 3.1300 -4.6887 -1.7825 22 9 2.9657 -5.7936 -1.0226 23 6 0.5809 -2.3570 1.6306 24 6 0.4541 -1.0387 2.3967 25 6 1.3150 -2.1720 2.9602 26 1 -0.4851 0.8369 -0.0740 27 1 2.0733 -1.4691 -2.0314 28 1 4.5920 -0.4720 -5.7486 29 1 4.8222 -3.6160 -4.4969 30 1 4.5268 -5.6202 -3.1052 31 1 -0.2849 -3.0191 1.6216 32 1 0.9697 -0.1687 1.9900 33 1 -0.4951 -0.8337 2.8920 34 1 0.9319 -2.7121 3.8260 35 1 2.3973 -2.0481 2.9246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528178388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:16 Heat of formation + Delta-G solvation = -144.371911 kcal Electronic energy + Delta-G solvation = -26991.711626 eV Core-core repulsion = 22542.320019 eV Total energy + Delta-G solvation = -4449.391607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.38057 -48.28279 -47.36781 -39.83147 -38.75646 -36.86784 -35.95951 -33.32062 -31.78014 -30.51115 -29.52859 -25.98557 -25.34844 -23.78166 -22.41739 -21.35444 -21.00227 -19.63362 -18.67684 -18.31407 -17.92802 -17.34306 -16.74958 -16.21960 -15.68332 -15.29067 -15.06511 -15.00257 -14.44061 -14.42744 -13.90279 -13.81409 -13.70970 -13.65057 -13.51157 -13.28471 -13.02432 -12.77777 -12.23582 -12.14121 -11.88383 -11.69882 -11.31119 -11.16800 -10.93540 -10.78778 -10.45352 -10.40024 -9.82011 -9.38036 -8.92069 -8.68504 -8.50612 -7.95550 -7.41000 -6.52723 -4.26237 1.23484 1.55874 2.64478 2.99801 3.12111 3.15914 3.42308 3.52069 3.91947 4.13985 4.26542 4.43253 4.61359 4.67799 4.71404 4.95191 5.07463 5.16765 5.48296 5.67961 5.80423 5.96914 6.10421 6.11857 6.19822 6.40216 6.42102 6.48043 6.75864 6.79826 6.86246 7.01192 7.24118 7.28349 7.37125 7.86370 8.19793 8.86318 9.29341 9.75604 10.47635 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.006146 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.070038 B = 4554.661533 C = 6228.952736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.401 5.401 10 C 0.520 3.480 11 O -0.583 6.583 12 C -0.097 4.097 13 C -0.052 4.052 14 C 0.067 3.933 15 O -0.312 6.312 16 C 0.409 3.591 17 F -0.202 7.202 18 F -0.202 7.202 19 C -0.155 4.155 20 C -0.140 4.140 21 C 0.114 3.886 22 F -0.126 7.126 23 C 0.108 3.892 24 C -0.144 4.144 25 C -0.218 4.218 26 H 0.273 0.727 27 H 0.185 0.815 28 H 0.179 0.821 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.024 1.213 -7.800 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.151 4.151 3 Si 0.725 3.275 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.111 0.889 9 N -0.118 5.118 10 C 0.309 3.691 11 O -0.468 6.468 12 C -0.101 4.101 13 C -0.070 4.070 14 C 0.025 3.975 15 O -0.230 6.230 16 C 0.319 3.681 17 F -0.184 7.184 18 F -0.184 7.184 19 C -0.174 4.174 20 C -0.159 4.159 21 C 0.093 3.907 22 F -0.105 7.105 23 C 0.003 3.997 24 C -0.181 4.181 25 C -0.256 4.256 26 H 0.084 0.916 27 H 0.202 0.798 28 H 0.195 0.805 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.425 0.988 -7.517 10.612 hybrid contribution 0.648 0.528 -0.098 0.842 sum 8.074 1.516 -7.615 11.201 Atomic orbital electron populations 1.70049 1.06120 1.28211 1.42338 1.25390 0.95129 0.99659 0.94912 0.86301 0.80674 0.82010 0.78502 1.18689 1.20133 1.20025 1.19407 0.96657 0.84842 1.48179 0.88935 1.42629 1.43096 1.08004 1.18023 1.17873 0.84051 0.84713 0.82449 1.90679 1.48755 1.36095 1.71274 1.19944 0.99398 0.92141 0.98577 1.21593 0.95468 1.00472 0.89516 1.18816 0.99847 0.85418 0.93441 1.86663 1.61026 1.35654 1.39671 1.23358 0.73546 0.90778 0.80442 1.93088 1.42060 1.94229 1.88981 1.93083 1.89000 1.66061 1.70235 1.21337 1.02043 0.92381 1.01672 1.20670 1.00477 0.99556 0.95238 1.17711 0.98122 0.83151 0.91723 1.91519 1.94176 1.50371 1.74385 1.21137 0.95866 1.00503 0.82215 1.23194 0.99718 0.94005 1.01207 1.23393 0.99196 1.05350 0.97705 0.91632 0.79766 0.80466 0.84673 0.84445 0.87560 0.86944 0.90526 0.90199 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.36 11.34 55.50 0.63 -19.74 16 2 C 0.06 1.36 2.89 -17.46 -0.05 1.31 16 3 Si 0.90 17.96 29.18 -169.99 -4.96 13.00 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.36 -8.66 5.57 -15.00 -0.08 -8.74 16 8 H 0.09 2.18 6.54 -52.48 -0.34 1.83 16 9 N -0.40 -9.99 2.77 -108.88 -0.30 -10.29 16 10 C 0.52 13.24 7.27 -12.45 -0.09 13.15 16 11 O -0.58 -16.22 15.84 5.27 0.08 -16.14 16 12 C -0.10 -2.14 5.52 -104.93 -0.58 -2.72 16 13 C -0.05 -1.05 7.75 -39.01 -0.30 -1.36 16 14 C 0.07 1.17 6.47 -39.30 -0.25 0.92 16 15 O -0.31 -4.68 10.43 -19.56 -0.20 -4.88 16 16 C 0.41 4.34 5.98 101.05 0.60 4.94 16 17 F -0.20 -2.38 15.59 2.25 0.04 -2.34 16 18 F -0.20 -2.36 15.56 2.25 0.04 -2.33 16 19 C -0.16 -2.44 8.25 -39.35 -0.32 -2.77 16 20 C -0.14 -2.30 10.01 -39.59 -0.40 -2.69 16 21 C 0.11 2.29 7.24 -38.95 -0.28 2.00 16 22 F -0.13 -2.70 16.09 2.25 0.04 -2.66 16 23 C 0.11 2.55 5.61 -67.93 -0.38 2.17 16 24 C -0.14 -3.08 8.17 -26.70 -0.22 -3.30 16 25 C -0.22 -4.43 10.39 -26.69 -0.28 -4.71 16 26 H 0.27 6.28 8.32 -40.81 -0.34 5.94 16 27 H 0.19 4.04 5.45 -52.48 -0.29 3.75 16 28 H 0.18 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.14 1.84 5.07 -52.48 -0.27 1.57 16 30 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.11 2.60 7.78 -51.93 -0.40 2.19 16 32 H 0.11 2.57 4.52 -51.93 -0.23 2.33 16 33 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -29.05 307.54 -5.43 -34.48 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -2.78 Total: 8.06 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.64 Total: -1.80 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.33 Total: -30.03 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.12 Total: -21.02 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.11 Total: -7.33 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -4.96 Total: 13.00 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.05 -5.43 -34.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528178388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.893 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds