Wall clock time and date at job start Tue Mar 31 2020 11:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76200 * 103.00233 * 2 1 4 4 C 1.39175 * 119.65206 * 180.27742 * 3 2 1 5 5 C 1.39483 * 118.92725 * 180.26818 * 4 3 2 6 6 C 1.48118 * 120.88441 * 179.73082 * 5 4 3 7 7 O 1.21512 * 119.99653 * 359.72757 * 6 5 4 8 8 N 1.34772 * 120.00148 * 179.72369 * 6 5 4 9 9 C 1.39385 * 120.00181 * 185.11019 * 8 6 5 10 10 C 1.38621 * 119.58283 * 185.35945 * 9 8 6 11 11 C 1.40800 * 118.79090 * 179.70269 * 10 9 8 12 12 C 1.41545 * 120.99223 * 180.25641 * 11 10 9 13 13 H 1.08007 * 120.00008 * 153.74714 * 12 11 10 14 14 C 1.40029 * 120.00477 * 333.74472 * 12 11 10 15 15 N 1.30747 * 119.99782 * 350.16526 * 14 12 11 16 16 Si 1.86799 * 120.00477 * 170.15918 * 14 12 11 17 17 H 1.48505 * 109.46833 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47248 * 120.00243 * 16 14 12 19 19 H 1.48502 * 109.47054 * 240.00490 * 16 14 12 20 20 C 1.41175 * 118.01055 * 0.27708 * 11 10 9 21 21 C 1.37589 * 119.02118 * 359.97438 * 20 11 10 22 22 N 1.32084 * 121.11011 * 0.02562 * 21 20 11 23 23 C 1.40070 * 118.23726 * 359.46512 * 5 4 3 24 24 C 1.37946 * 119.18560 * 0.27252 * 23 5 4 25 25 N 1.31916 * 121.00600 * 359.97438 * 24 23 5 26 26 H 1.08993 * 109.46660 * 59.99946 * 1 2 3 27 27 H 1.08999 * 109.47211 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46837 * 299.99780 * 1 2 3 29 29 H 1.08004 * 120.53713 * 0.02562 * 4 3 2 30 30 H 0.97004 * 120.00511 * 5.10784 * 8 6 5 31 31 H 1.08004 * 120.60028 * 359.97438 * 10 9 8 32 32 H 0.96993 * 119.99964 * 179.97438 * 15 14 12 33 33 H 1.08005 * 120.48883 * 180.02562 * 20 11 10 34 34 H 1.07993 * 119.44513 * 179.97438 * 21 20 11 35 35 H 1.07998 * 120.40618 * 180.24679 * 23 5 4 36 36 H 1.07994 * 119.49504 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5438 2.1156 -0.0059 5 6 3.8404 3.4785 -0.0001 6 6 5.2442 3.9511 0.0000 7 8 6.1557 3.1475 0.0000 8 7 5.5105 5.2722 0.0001 9 6 6.8268 5.7179 -0.1074 10 6 7.1023 7.0718 0.0055 11 6 8.4385 7.5029 -0.0994 12 6 8.7732 8.8736 0.0141 13 1 9.7571 9.1630 0.3527 14 6 7.8287 9.8543 -0.3127 15 7 6.7116 9.5156 -0.9018 16 14 8.1645 11.6466 0.0930 17 1 9.4896 11.7648 0.7529 18 1 8.1620 12.4462 -1.1583 19 1 7.1091 12.1534 1.0065 20 6 9.4345 6.5273 -0.3215 21 6 9.0636 5.2064 -0.4252 22 7 7.7982 4.8427 -0.3209 23 6 2.7756 4.3885 -0.0001 24 6 1.4818 3.9099 0.0000 25 7 1.2367 2.6138 -0.0005 26 1 -0.3632 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.3361 1.3816 -0.0108 30 1 4.7861 5.9131 0.0748 31 1 6.3069 7.7824 0.1752 32 1 6.0572 10.1949 -1.1278 33 1 10.4723 6.8135 -0.4079 34 1 9.8198 4.4545 -0.5955 35 1 2.9652 5.4517 0.0003 36 1 0.6570 4.6071 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531925241.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:01 Heat of formation + Delta-G solvation = 39.602773 kcal Electronic energy + Delta-G solvation = -22133.720959 eV Core-core repulsion = 18709.209456 eV Total energy + Delta-G solvation = -3424.511503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.57669 -39.26873 -37.75726 -34.50613 -33.93474 -32.77615 -31.48410 -30.59535 -29.19736 -28.65229 -26.08341 -24.98643 -23.81306 -22.10767 -21.75338 -20.16120 -18.53959 -17.83457 -16.85268 -16.52620 -15.95405 -15.42954 -15.27979 -14.98746 -14.95273 -14.29541 -14.27108 -14.10806 -13.98770 -13.77309 -13.49735 -13.02240 -12.75813 -12.67460 -12.42277 -11.98908 -11.50326 -11.24635 -10.98547 -10.75863 -10.41118 -10.22031 -10.20151 -10.08505 -9.94344 -9.83557 -9.56507 -9.47597 -8.07120 -7.84869 -7.79825 -7.14641 -6.82592 -4.69815 0.56066 0.81675 1.20879 2.01662 2.50629 2.72274 2.98132 3.03407 3.08941 3.24703 3.33913 3.79748 3.81358 4.31943 4.57472 4.63121 4.78876 4.84086 4.87738 4.94375 4.96598 5.47206 5.52982 5.56080 5.59633 5.83567 5.96721 6.25759 6.47232 6.54401 6.72293 6.86788 7.05222 7.27899 7.36590 7.45557 7.65279 7.84311 8.09071 8.32168 8.58757 8.67707 8.71686 9.57513 10.02776 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.002783 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.439322 B =10057.965309 C =11147.556077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.073 6.073 3 C 0.113 3.887 4 C -0.094 4.094 5 C -0.059 4.059 6 C 0.541 3.459 7 O -0.466 6.466 8 N -0.647 5.647 9 C 0.333 3.667 10 C -0.235 4.235 11 C 0.141 3.859 12 C -0.452 4.452 13 H 0.083 0.917 14 C 0.075 3.925 15 N -0.795 5.795 16 Si 0.915 3.085 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.271 1.271 20 C -0.279 4.279 21 C 0.118 3.882 22 N -0.554 5.554 23 C -0.150 4.150 24 C 0.112 3.888 25 N -0.482 5.482 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.153 0.847 30 H 0.408 0.592 31 H 0.134 0.866 32 H 0.281 0.719 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 -8.222 1.623 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.166 5.834 3 C -0.135 4.135 4 C -0.120 4.120 5 C -0.072 4.072 6 C 0.325 3.675 7 O -0.336 6.336 8 N -0.293 5.293 9 C 0.108 3.892 10 C -0.261 4.261 11 C 0.132 3.868 12 C -0.483 4.483 13 H 0.101 0.899 14 C -0.143 4.143 15 N -0.421 5.421 16 Si 0.739 3.261 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.303 4.303 21 C -0.036 4.036 22 N -0.273 5.273 23 C -0.173 4.173 24 C -0.048 4.048 25 N -0.196 5.196 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.171 0.829 30 H 0.245 0.755 31 H 0.152 0.848 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.162 0.838 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.381 -10.993 1.436 17.377 hybrid contribution -0.121 3.658 0.124 3.662 sum -13.502 -7.336 1.560 15.445 Atomic orbital electron populations 1.23454 0.93801 1.06044 1.06705 1.85652 1.07606 0.98511 1.91626 1.22952 0.91668 0.98589 1.00314 1.21779 0.96044 0.95926 0.98255 1.20512 0.94296 0.93837 0.98585 1.18144 0.87445 0.83137 0.78784 1.90865 1.45407 1.53284 1.44050 1.43254 1.07729 1.06813 1.71547 1.18135 0.83458 0.89761 0.97818 1.21673 0.99456 0.91827 1.13099 1.17601 0.90290 0.93156 0.85714 1.19630 0.99636 0.89918 1.39148 0.89915 1.25963 0.94112 1.02024 0.92239 1.69739 1.07427 1.36187 1.28772 0.86141 0.79860 0.80984 0.79073 1.18318 1.19841 1.19653 1.21951 0.99460 0.94235 1.14617 1.21762 0.91485 0.93989 0.96346 1.67158 0.99998 1.36856 1.23336 1.22363 0.93282 1.01032 1.00641 1.22639 0.95987 0.91309 0.94823 1.67871 1.35009 1.02956 1.13726 0.89443 0.87909 0.89453 0.82941 0.75532 0.84828 0.90804 0.87800 0.85696 0.83833 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 10.01 101.05 1.01 0.00 16 2 S -0.07 -0.78 22.55 -107.50 -2.42 -3.20 16 3 C 0.11 1.47 7.00 -16.96 -0.12 1.35 16 4 C -0.09 -1.35 9.41 -38.77 -0.36 -1.71 16 5 C -0.06 -0.88 5.90 -104.69 -0.62 -1.50 16 6 C 0.54 10.30 7.75 -12.21 -0.09 10.21 16 7 O -0.47 -10.66 14.73 5.36 0.08 -10.58 16 8 N -0.65 -12.45 5.34 -12.28 -0.07 -12.52 16 9 C 0.33 7.90 7.40 -154.77 -1.15 6.75 16 10 C -0.24 -5.80 8.61 -38.47 -0.33 -6.13 16 11 C 0.14 3.62 5.60 -106.55 -0.60 3.02 16 12 C -0.45 -11.32 9.14 -37.65 -0.34 -11.67 16 13 H 0.08 1.99 7.87 -52.48 -0.41 1.58 16 14 C 0.07 1.75 5.31 -17.34 -0.09 1.66 16 15 N -0.80 -18.94 10.70 55.55 0.59 -18.34 16 16 Si 0.92 17.51 29.57 -169.99 -5.03 12.48 16 17 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 18 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 20 C -0.28 -6.69 9.90 -38.70 -0.38 -7.08 16 21 C 0.12 2.79 11.15 -17.68 -0.20 2.60 16 22 N -0.55 -13.94 7.89 -12.54 -0.10 -14.04 16 23 C -0.15 -1.75 9.61 -39.00 -0.37 -2.12 16 24 C 0.11 1.19 11.16 -17.62 -0.20 0.99 16 25 N -0.48 -5.89 9.40 -12.16 -0.11 -6.00 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 28 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.15 2.23 7.74 -52.48 -0.41 1.82 16 30 H 0.41 6.34 6.85 -40.82 -0.28 6.06 16 31 H 0.13 3.25 6.11 -52.48 -0.32 2.93 16 32 H 0.28 6.03 8.29 -40.82 -0.34 5.69 16 33 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 34 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 35 H 0.14 1.34 6.54 -52.49 -0.34 1.00 16 36 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -31.03 331.43 -9.34 -40.37 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -3.43 Total: 10.47 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.85 Total: -3.63 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.32 Total: -50.90 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.42 Total: -3.20 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.03 -9.34 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531925241.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.971 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds