Wall clock time and date at job start Tue Mar 31 2020 11:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86791 * 120.00409 * 2 1 4 4 H 1.48503 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47448 * 300.00444 * 3 2 1 6 6 H 1.48502 * 109.47062 * 60.00193 * 3 2 1 7 7 C 1.37886 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99485 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47077 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.46215 * 185.00075 * 10 9 7 12 12 C 1.53190 * 109.31230 * 178.62755 * 11 10 9 13 13 N 1.46927 * 108.77698 * 54.63925 * 12 11 10 14 14 S 1.65599 * 120.63350 * 126.36557 * 13 12 11 15 15 O 1.42105 * 104.27655 * 333.92859 * 14 13 12 16 16 O 1.42101 * 104.27764 * 206.07296 * 14 13 12 17 17 C 1.81395 * 104.44748 * 90.00165 * 14 13 12 18 18 C 1.52999 * 109.46986 * 180.02562 * 17 14 13 19 19 F 1.39901 * 109.47320 * 59.99850 * 18 17 14 20 20 F 1.39902 * 109.47367 * 179.97438 * 18 17 14 21 21 F 1.39905 * 109.47027 * 300.00024 * 18 17 14 22 22 C 1.46929 * 118.73582 * 306.64046 * 13 12 11 23 23 C 1.52768 * 109.00653 * 53.31120 * 22 13 12 24 24 H 0.97006 * 120.00129 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46902 * 60.00530 * 9 7 2 26 26 H 1.08999 * 109.47437 * 300.00531 * 9 7 2 27 27 H 1.08999 * 109.46059 * 304.97853 * 10 9 7 28 28 H 1.09004 * 109.49589 * 58.67675 * 11 10 9 29 29 H 1.09003 * 109.49766 * 298.58455 * 11 10 9 30 30 H 1.08996 * 109.59194 * 294.85177 * 12 11 10 31 31 H 1.09002 * 109.70059 * 174.49408 * 12 11 10 32 32 H 1.09003 * 109.47393 * 299.99669 * 17 14 13 33 33 H 1.08994 * 109.47678 * 60.00285 * 17 14 13 34 34 H 1.09003 * 109.58784 * 173.13889 * 22 13 12 35 35 H 1.08999 * 109.58859 * 293.57188 * 22 13 12 36 36 H 1.08996 * 109.55959 * 185.55354 * 23 22 13 37 37 H 1.08993 * 109.36018 * 65.49718 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4837 -4.9838 -0.1263 12 6 2.4841 -6.1435 -0.1605 13 7 3.3498 -6.0562 1.0234 14 16 3.5229 -7.3523 2.0395 15 8 2.3197 -8.0902 1.8744 16 8 3.8609 -6.7728 3.2922 17 6 4.9321 -8.2727 1.3631 18 6 5.1948 -9.5091 2.2252 19 9 4.0600 -10.3273 2.2252 20 9 6.2812 -10.2193 1.7032 21 9 5.4830 -9.1115 3.5352 22 6 4.0544 -4.7951 1.2919 23 6 3.0407 -3.6523 1.3068 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.9288 -3.5554 -0.8426 28 1 0.8989 -4.9806 -1.0462 29 1 0.8177 -5.1028 0.7283 30 1 3.0914 -6.0758 -1.0630 31 1 1.9473 -7.0921 -0.1515 32 1 4.7073 -8.5829 0.3426 33 1 5.8161 -7.6352 1.3627 34 1 4.5515 -4.8533 2.2602 35 1 4.7923 -4.6152 0.5102 36 1 3.5641 -2.7015 1.4069 37 1 2.3601 -3.7839 2.1479 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564907085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:46 Heat of formation + Delta-G solvation = -232.706148 kcal Electronic energy + Delta-G solvation = -25291.827809 eV Core-core repulsion = 20974.049694 eV Total energy + Delta-G solvation = -4317.778115 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.68895 -48.18501 -48.15991 -38.46619 -37.49152 -36.24943 -34.05848 -32.26635 -31.99626 -30.85568 -27.77463 -24.56012 -24.18162 -23.02479 -21.52419 -19.82313 -19.54895 -19.14426 -18.74021 -18.27430 -17.45539 -16.40903 -16.27922 -16.20774 -15.12394 -14.95377 -14.63984 -14.57026 -14.56679 -14.27493 -14.26893 -14.10366 -13.76006 -13.72545 -13.42919 -13.36601 -12.84701 -12.62631 -12.36900 -12.09626 -11.93937 -11.83676 -11.59215 -11.21367 -10.97271 -10.78431 -10.72730 -10.43355 -10.15553 -9.68100 -9.45547 -9.01681 -8.80152 -8.37118 -6.01613 -4.03600 -0.33026 1.82038 2.38966 3.01250 3.25546 3.29071 3.37253 3.37532 3.39592 3.65135 3.83208 4.32873 4.43749 4.57664 4.67388 5.21098 5.31088 5.33979 5.42367 5.59431 5.68525 5.74039 5.88072 6.02528 6.29864 6.35795 6.59207 6.60055 6.94212 6.98892 7.09280 7.65186 7.79835 7.98200 8.40204 9.03166 9.60369 11.09671 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.034657 B = 0.003089 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.723031 B = 9063.664796 C = 9357.551422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.080 4.080 11 C -0.126 4.126 12 C 0.114 3.886 13 N -0.983 5.983 14 S 2.612 3.388 15 O -0.926 6.926 16 O -0.924 6.924 17 C -0.720 4.720 18 C 0.475 3.525 19 F -0.169 7.169 20 F -0.170 7.170 21 F -0.168 7.168 22 C 0.111 3.889 23 C -0.116 4.116 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.389 -18.654 0.856 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.099 4.099 11 C -0.165 4.165 12 C -0.010 4.010 13 N -0.824 5.824 14 S 2.697 3.303 15 O -0.916 6.916 16 O -0.914 6.914 17 C -0.842 4.842 18 C 0.419 3.581 19 F -0.150 7.150 20 F -0.151 7.151 21 F -0.150 7.150 22 C -0.013 4.013 23 C -0.155 4.155 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.192 0.808 33 H 0.192 0.808 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.793 -18.820 1.608 21.754 hybrid contribution 1.112 0.716 -0.535 1.426 sum 11.905 -18.104 1.073 21.694 Atomic orbital electron populations 1.69971 1.06059 1.26446 1.50932 1.25028 0.94801 0.99216 0.95468 0.86588 0.80082 0.84061 0.77543 1.19777 1.21145 1.21090 1.21270 0.92959 0.90939 1.50292 0.92522 1.19144 0.93658 0.91034 0.97303 1.21178 0.97994 0.94548 0.96147 1.21974 0.97413 0.94582 1.02565 1.21658 0.92325 1.00944 0.86084 1.57655 1.57917 1.24761 1.42054 1.05307 0.75511 0.74633 0.74837 1.93649 1.38853 1.73143 1.85925 1.93656 1.84909 1.74653 1.38161 1.32475 1.29044 1.08765 1.13881 1.19371 0.75312 0.84365 0.79054 1.93319 1.50446 1.74816 1.96443 1.93237 1.55328 1.80237 1.86289 1.93323 1.93436 1.90373 1.37852 1.21691 0.95304 0.82989 1.01340 1.21780 0.97665 0.96859 0.99193 0.93089 0.96550 0.96507 0.92272 0.90876 0.91643 0.91362 0.89375 0.80835 0.80786 0.89333 0.91404 0.89470 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -13.69 8.39 -34.44 -0.29 -13.98 16 8 H 0.06 1.44 7.05 -52.49 -0.37 1.07 16 9 C 0.03 0.62 4.45 -27.89 -0.12 0.50 16 10 C -0.08 -1.46 2.10 -90.58 -0.19 -1.65 16 11 C -0.13 -1.93 5.36 -26.61 -0.14 -2.07 16 12 C 0.11 1.33 6.43 -3.71 -0.02 1.31 16 13 N -0.98 -11.62 3.23 -113.76 -0.37 -11.98 16 14 S 2.61 30.53 5.11 -107.50 -0.55 29.98 16 15 O -0.93 -13.18 16.10 -57.54 -0.93 -14.11 16 16 O -0.92 -13.43 16.09 -57.54 -0.93 -14.36 16 17 C -0.72 -5.27 6.19 37.16 0.23 -5.04 16 18 C 0.47 4.54 3.14 37.16 0.12 4.66 16 19 F -0.17 -1.81 16.59 2.25 0.04 -1.78 16 20 F -0.17 -1.55 17.32 2.25 0.04 -1.51 16 21 F -0.17 -1.83 16.59 2.25 0.04 -1.79 16 22 C 0.11 1.38 6.40 -3.93 -0.03 1.36 16 23 C -0.12 -1.94 5.17 -26.83 -0.14 -2.08 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.92 6.86 -51.93 -0.36 0.57 16 32 H 0.17 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.17 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.02 6.85 -51.93 -0.36 0.66 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.55 6.91 -51.93 -0.36 1.19 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -32.51 325.68 -7.52 -40.03 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.80 Total: -4.28 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.68 Total: -15.55 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.37 Total: -37.51 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.85 Total: -28.47 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.11 Total: -5.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 30.53 SS G_CDS: -0.55 Total: 29.98 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.51 -7.52 -40.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564907085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.677 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds