Wall clock time and date at job start Tue Mar 31 2020 11:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86791 * 120.00409 * 2 1 4 4 H 1.48503 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47448 * 300.00444 * 3 2 1 6 6 H 1.48502 * 109.47062 * 60.00193 * 3 2 1 7 7 C 1.37886 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99485 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47077 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.46215 * 185.00075 * 10 9 7 12 12 C 1.53190 * 109.31230 * 178.62755 * 11 10 9 13 13 N 1.46927 * 108.77698 * 54.63925 * 12 11 10 14 14 S 1.65599 * 120.63350 * 126.36557 * 13 12 11 15 15 O 1.42105 * 104.27655 * 333.92859 * 14 13 12 16 16 O 1.42101 * 104.27764 * 206.07296 * 14 13 12 17 17 C 1.81395 * 104.44748 * 90.00165 * 14 13 12 18 18 C 1.52999 * 109.46986 * 180.02562 * 17 14 13 19 19 F 1.39901 * 109.47320 * 59.99850 * 18 17 14 20 20 F 1.39902 * 109.47367 * 179.97438 * 18 17 14 21 21 F 1.39905 * 109.47027 * 300.00024 * 18 17 14 22 22 C 1.46929 * 118.73582 * 306.64046 * 13 12 11 23 23 C 1.52768 * 109.00653 * 53.31120 * 22 13 12 24 24 H 0.97006 * 120.00129 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46902 * 60.00530 * 9 7 2 26 26 H 1.08999 * 109.47437 * 300.00531 * 9 7 2 27 27 H 1.08999 * 109.46059 * 304.97853 * 10 9 7 28 28 H 1.09004 * 109.49589 * 58.67675 * 11 10 9 29 29 H 1.09003 * 109.49766 * 298.58455 * 11 10 9 30 30 H 1.08996 * 109.59194 * 294.85177 * 12 11 10 31 31 H 1.09002 * 109.70059 * 174.49408 * 12 11 10 32 32 H 1.09003 * 109.47393 * 299.99669 * 17 14 13 33 33 H 1.08994 * 109.47678 * 60.00285 * 17 14 13 34 34 H 1.09003 * 109.58784 * 173.13889 * 22 13 12 35 35 H 1.08999 * 109.58859 * 293.57188 * 22 13 12 36 36 H 1.08996 * 109.55959 * 185.55354 * 23 22 13 37 37 H 1.08993 * 109.36018 * 65.49718 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4837 -4.9838 -0.1263 12 6 2.4841 -6.1435 -0.1605 13 7 3.3498 -6.0562 1.0234 14 16 3.5229 -7.3523 2.0395 15 8 2.3197 -8.0902 1.8744 16 8 3.8609 -6.7728 3.2922 17 6 4.9321 -8.2727 1.3631 18 6 5.1948 -9.5091 2.2252 19 9 4.0600 -10.3273 2.2252 20 9 6.2812 -10.2193 1.7032 21 9 5.4830 -9.1115 3.5352 22 6 4.0544 -4.7951 1.2919 23 6 3.0407 -3.6523 1.3068 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.9288 -3.5554 -0.8426 28 1 0.8989 -4.9806 -1.0462 29 1 0.8177 -5.1028 0.7283 30 1 3.0914 -6.0758 -1.0630 31 1 1.9473 -7.0921 -0.1515 32 1 4.7073 -8.5829 0.3426 33 1 5.8161 -7.6352 1.3627 34 1 4.5515 -4.8533 2.2602 35 1 4.7923 -4.6152 0.5102 36 1 3.5641 -2.7015 1.4069 37 1 2.3601 -3.7839 2.1479 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564907085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:45 Heat of formation + Delta-G solvation = -255.142990 kcal Electronic energy + Delta-G solvation = -25292.800744 eV Core-core repulsion = 20974.049694 eV Total energy + Delta-G solvation = -4318.751050 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.42975 -48.96030 -48.87966 -39.64592 -38.48269 -37.23988 -35.69686 -33.79883 -32.90219 -31.96006 -29.50323 -26.01504 -25.10151 -24.19096 -23.00681 -21.07373 -20.39640 -19.88142 -19.69296 -19.09983 -18.50453 -18.28682 -17.23165 -17.10680 -16.50897 -15.91160 -15.70043 -15.55459 -15.32404 -15.28903 -15.07656 -15.02448 -15.01199 -14.79431 -14.60681 -14.32543 -14.00674 -13.61417 -13.54697 -13.38162 -13.35301 -13.13625 -12.86159 -12.57300 -12.53540 -12.33634 -12.13569 -11.98032 -11.69070 -11.27481 -10.97665 -10.77839 -10.50181 -9.95171 -8.14105 -6.23220 -1.21141 1.06357 1.42429 1.43512 1.55486 1.57504 2.30658 2.44709 2.58801 2.62834 2.91053 2.97624 3.20006 3.66930 3.72138 4.10066 4.12049 4.16137 4.32219 4.48462 4.57771 4.66164 4.87369 4.91982 5.01090 5.07882 5.32146 5.39435 5.42290 5.46786 5.61628 5.66849 5.87861 5.95205 6.32696 6.94878 7.45595 8.98154 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.034657 B = 0.003089 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.723031 B = 9063.664796 C = 9357.551422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.006 4.006 3 Si 0.960 3.040 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.524 4.524 8 H 0.069 0.931 9 C 0.028 3.972 10 C -0.072 4.072 11 C -0.128 4.128 12 C 0.119 3.881 13 N -0.987 5.987 14 S 2.615 3.385 15 O -0.961 6.961 16 O -0.962 6.962 17 C -0.693 4.693 18 C 0.467 3.533 19 F -0.179 7.179 20 F -0.164 7.164 21 F -0.180 7.180 22 C 0.118 3.882 23 C -0.118 4.118 24 H 0.260 0.740 25 H -0.012 1.012 26 H -0.021 1.021 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.213 0.787 33 H 0.212 0.788 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.580 -19.672 -0.484 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.203 4.203 3 Si 0.786 3.214 4 H -0.179 1.179 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.562 4.562 8 H 0.088 0.912 9 C -0.010 4.010 10 C -0.091 4.091 11 C -0.168 4.168 12 C -0.006 4.006 13 N -0.827 5.827 14 S 2.707 3.293 15 O -0.951 6.951 16 O -0.953 6.953 17 C -0.819 4.819 18 C 0.411 3.589 19 F -0.161 7.161 20 F -0.145 7.145 21 F -0.161 7.161 22 C -0.006 4.006 23 C -0.157 4.157 24 H 0.068 0.932 25 H 0.007 0.993 26 H -0.003 1.003 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.231 0.769 33 H 0.229 0.771 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.954 -19.820 0.287 24.241 hybrid contribution 0.104 0.962 -0.106 0.974 sum 14.059 -18.858 0.181 23.523 Atomic orbital electron populations 1.70125 1.07958 1.27352 1.52594 1.25991 0.95633 1.03369 0.95333 0.85465 0.79500 0.79183 0.77294 1.17892 1.20853 1.21184 1.21741 0.93734 0.91811 1.48889 0.91243 1.19078 0.94267 0.93516 0.94098 1.21024 0.96997 0.93493 0.97549 1.21933 0.98112 0.94963 1.01746 1.21711 0.92026 0.99413 0.87418 1.57505 1.58471 1.24850 1.41870 1.04732 0.75954 0.74463 0.74165 1.93612 1.41728 1.73571 1.86168 1.93615 1.85599 1.75632 1.40408 1.32258 1.27493 1.07323 1.14835 1.19692 0.75178 0.85033 0.78965 1.93308 1.51022 1.75303 1.96459 1.93253 1.54990 1.80193 1.86108 1.93311 1.93492 1.90440 1.38905 1.21638 0.94243 0.81284 1.03459 1.21713 0.98143 0.98655 0.97199 0.93158 0.99329 1.00280 0.90831 0.90517 0.94119 0.87523 0.87989 0.76924 0.77068 0.88337 0.87710 0.90830 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.11 13.29 21.45 0.28 -56.82 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.52 -28.23 8.39 25.60 0.21 -28.01 16 8 H 0.07 3.48 7.05 -2.91 -0.02 3.46 16 9 C 0.03 1.39 4.45 29.85 0.13 1.52 16 10 C -0.07 -2.62 2.10 -10.77 -0.02 -2.64 16 11 C -0.13 -3.90 5.36 30.67 0.16 -3.73 16 12 C 0.12 2.40 6.43 86.36 0.56 2.96 16 13 N -0.99 -20.52 3.23 -513.83 -1.66 -22.18 16 14 S 2.62 55.27 5.11 -56.49 -0.29 54.98 16 15 O -0.96 -26.22 16.10 -127.65 -2.06 -28.27 16 16 O -0.96 -27.00 16.09 -127.65 -2.05 -29.05 16 17 C -0.69 -6.90 6.19 71.98 0.45 -6.45 16 18 C 0.47 7.49 3.14 71.98 0.23 7.72 16 19 F -0.18 -3.50 16.59 44.97 0.75 -2.75 16 20 F -0.16 -2.43 17.32 44.97 0.78 -1.65 16 21 F -0.18 -3.56 16.59 44.97 0.75 -2.82 16 22 C 0.12 2.61 6.40 86.22 0.55 3.16 16 23 C -0.12 -3.93 5.17 30.53 0.16 -3.77 16 24 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 26 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.84 6.86 -2.39 -0.02 1.82 16 32 H 0.21 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.21 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.10 2.02 6.85 -2.39 -0.02 2.00 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 2.60 6.91 -2.39 -0.02 2.58 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -75.21 325.68 2.50 -72.71 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: 1.09 Total: -0.35 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 2.89 Total: -29.15 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.37 Total: -79.00 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -4.11 Total: -57.32 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 2.27 Total: -7.22 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.29 Total: 54.98 kcal Total: -75.21 2.50 -72.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564907085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.436 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds