Wall clock time and date at job start Tue Mar 31 2020 11:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48494 * 109.47200 * 270.00186 * 3 2 1 5 5 H 1.48500 * 109.47098 * 30.00681 * 3 2 1 6 6 H 1.48499 * 109.46662 * 150.00129 * 3 2 1 7 7 C 1.37871 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99913 * 172.23687 * 7 2 1 9 9 C 1.50696 * 120.00099 * 352.23306 * 7 2 1 10 10 C 1.53002 * 115.55158 * 84.78947 * 9 7 2 11 11 S 1.81397 * 109.47201 * 65.18726 * 10 9 7 12 12 O 1.42107 * 110.54235 * 62.07469 * 11 10 9 13 13 O 1.42098 * 110.54507 * 285.32257 * 11 10 9 14 14 N 1.65600 * 104.44859 * 173.69689 * 11 10 9 15 15 C 1.46499 * 120.00098 * 65.00773 * 14 11 10 16 16 H 1.08995 * 110.43724 * 22.64252 * 15 14 11 17 17 C 1.51105 * 110.38162 * 260.30082 * 15 14 11 18 18 C 1.30526 * 111.10252 * 224.74816 * 17 15 14 19 19 C 1.51165 * 111.12018 * 0.03250 * 18 17 15 20 20 H 1.09001 * 110.42264 * 135.19681 * 19 18 17 21 21 C 1.50701 * 110.37864 * 257.59178 * 19 18 17 22 22 O 1.20821 * 119.99703 * 115.26420 * 21 19 18 23 23 O 1.34226 * 120.00068 * 295.26038 * 21 19 18 24 24 C 1.54630 * 110.38910 * 144.99979 * 15 14 11 25 25 C 1.53003 * 117.50015 * 230.45449 * 9 7 2 26 26 C 1.53003 * 117.50252 * 299.11727 * 9 7 2 27 27 H 0.97002 * 120.00064 * 5.02454 * 1 2 3 28 28 H 1.09003 * 109.46779 * 305.18960 * 10 9 7 29 29 H 1.09001 * 109.47633 * 185.19294 * 10 9 7 30 30 H 0.97006 * 119.99698 * 244.99976 * 14 11 10 31 31 H 1.08004 * 124.44845 * 44.72910 * 17 15 14 32 32 H 1.08000 * 124.44562 * 180.02562 * 18 17 15 33 33 H 0.96701 * 116.99999 * 180.02562 * 23 21 19 34 34 H 1.09000 * 111.03368 * 261.47240 * 24 15 14 35 35 H 1.08990 * 111.04011 * 25.36959 * 24 15 14 36 36 H 1.09006 * 117.50101 * 215.00239 * 25 9 7 37 37 H 1.08996 * 117.50012 * 0.02787 * 25 9 7 38 38 H 1.09001 * 117.49372 * 359.97438 * 26 9 7 39 39 H 1.08997 * 117.50149 * 144.97148 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0771 -1.1982 -0.1269 9 6 1.2614 -2.4932 0.1753 10 6 0.6670 -3.0914 -1.1014 11 16 2.0073 -3.5621 -2.2295 12 8 2.8285 -4.5603 -1.6391 13 8 2.5762 -2.4100 -2.8362 14 7 1.2444 -4.3444 -3.4738 15 6 0.3170 -3.6126 -4.3402 16 1 0.5302 -2.5441 -4.3095 17 6 -1.1114 -3.8763 -3.9239 18 6 -1.8674 -4.1121 -4.9614 19 6 -1.0691 -4.0458 -6.2434 20 1 -1.3210 -4.8847 -6.8921 21 6 -1.3206 -2.7393 -6.9512 22 8 -0.4208 -1.9454 -7.0914 23 8 -2.5442 -2.4578 -7.4258 24 6 0.4068 -4.1384 -5.7916 25 6 1.7804 -3.4660 1.2360 26 6 0.4825 -2.6910 1.4772 27 1 -0.4850 0.8368 -0.0736 28 1 0.0275 -2.3530 -1.5850 29 1 0.0777 -3.9731 -0.8494 30 1 1.4117 -5.2872 -3.6291 31 1 -1.4609 -3.8708 -2.9019 32 1 -2.9247 -4.3266 -4.9108 33 1 -2.6568 -1.6077 -7.8728 34 1 1.0436 -3.4974 -6.4012 35 1 0.7586 -5.1698 -5.8130 36 1 1.6983 -4.5322 1.0244 37 1 2.6590 -3.1661 1.8071 38 1 0.5079 -1.8816 2.2068 39 1 -0.4536 -3.2469 1.4242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577066756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:01 Heat of formation + Delta-G solvation = -117.540838 kcal Electronic energy + Delta-G solvation = -24985.127015 eV Core-core repulsion = 21214.199583 eV Total energy + Delta-G solvation = -3770.927433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.86049 -38.55551 -36.76032 -36.25630 -36.19851 -35.08534 -33.56106 -32.03858 -29.59537 -28.15015 -27.41203 -25.45055 -23.34896 -21.22084 -20.50707 -19.88436 -19.27632 -18.73905 -18.10329 -17.31857 -16.99358 -16.72600 -16.32435 -15.46958 -15.08237 -14.92410 -14.64079 -14.27120 -13.88481 -13.46068 -13.16592 -12.92993 -12.54732 -12.26574 -12.00081 -11.95151 -11.82670 -11.64982 -11.54351 -11.28394 -11.16257 -11.04230 -10.95410 -10.92830 -10.90225 -10.56934 -10.45643 -10.11465 -9.77643 -9.39042 -9.24680 -8.95603 -8.55735 -8.10222 -6.13865 -4.24014 1.05601 1.78779 2.15770 2.94058 3.31872 3.37822 3.42541 3.45008 4.21941 4.29247 4.38273 4.53018 4.83921 4.92235 5.01980 5.09644 5.14868 5.19138 5.21997 5.35488 5.49685 5.62728 5.75700 5.94011 5.98702 6.17145 6.18270 6.27001 6.34647 6.36320 6.51884 6.60150 6.71713 6.97568 7.21022 7.27771 7.38659 7.72300 7.80930 8.20448 8.81340 9.47277 10.93717 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.004846 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.727418 B = 5776.898690 C = 6613.883671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.082 3.918 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.554 4.554 11 S 2.603 3.397 12 O -0.974 6.974 13 O -0.948 6.948 14 N -1.122 6.122 15 C 0.163 3.837 16 H 0.114 0.886 17 C -0.151 4.151 18 C -0.161 4.161 19 C -0.060 4.060 20 H 0.118 0.882 21 C 0.486 3.514 22 O -0.505 6.505 23 O -0.515 6.515 24 C -0.116 4.116 25 C -0.208 4.208 26 C -0.141 4.141 27 H 0.263 0.737 28 H 0.133 0.867 29 H 0.099 0.901 30 H 0.410 0.590 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.410 0.590 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.375 -9.839 -11.855 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.123 4.123 3 Si 0.717 3.283 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.041 3.959 10 C -0.687 4.687 11 S 2.700 3.300 12 O -0.964 6.964 13 O -0.937 6.937 14 N -0.876 5.876 15 C 0.055 3.945 16 H 0.132 0.868 17 C -0.171 4.171 18 C -0.180 4.180 19 C -0.079 4.079 20 H 0.136 0.864 21 C 0.328 3.672 22 O -0.392 6.392 23 O -0.327 6.327 24 C -0.155 4.155 25 C -0.245 4.245 26 C -0.180 4.180 27 H 0.072 0.928 28 H 0.152 0.848 29 H 0.118 0.882 30 H 0.243 0.757 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.269 0.731 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.278 -9.520 -11.574 16.248 hybrid contribution -0.624 1.108 -0.217 1.290 sum -6.902 -8.412 -11.790 16.044 Atomic orbital electron populations 1.69970 1.06022 1.27168 1.47828 1.24941 0.94811 0.99216 0.93287 0.86591 0.80148 0.82831 0.78704 1.20012 1.21083 1.19407 1.20514 0.93699 0.88582 1.52490 0.91372 1.18281 0.99003 0.94344 0.84304 1.30022 1.16497 1.08423 1.13728 1.05280 0.76531 0.73848 0.74324 1.93507 1.65415 1.59549 1.77934 1.93552 1.74901 1.50886 1.74403 1.56030 1.61228 1.22395 1.47935 1.20686 0.86345 0.97989 0.89462 0.86836 1.24136 0.95911 0.96819 1.00205 1.22902 0.99862 1.03362 0.91906 1.20780 0.97233 0.93138 0.96769 0.86379 1.23264 0.79654 0.88864 0.75422 1.90766 1.44902 1.49149 1.54367 1.84517 1.34162 1.44136 1.69905 1.22816 0.93621 1.03428 0.95627 1.23198 0.98676 0.96020 1.06636 1.22548 0.92530 1.01019 1.01898 0.92762 0.84838 0.88231 0.75709 0.84055 0.84256 0.73137 0.88024 0.88771 0.90683 0.89533 0.89603 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.94 12.98 55.43 0.72 -23.22 16 2 C 0.08 2.25 5.38 -17.82 -0.10 2.16 16 3 Si 0.89 21.57 29.55 -169.99 -5.02 16.54 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.11 8.19 -34.44 -0.28 -14.39 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 C 0.04 1.04 1.32 -155.66 -0.21 0.83 16 10 C -0.55 -11.33 5.90 37.16 0.22 -11.11 16 11 S 2.60 52.12 5.17 -107.50 -0.56 51.57 16 12 O -0.97 -21.16 18.08 -57.54 -1.04 -22.20 16 13 O -0.95 -22.83 17.11 -57.54 -0.98 -23.81 16 14 N -1.12 -16.23 5.42 -4.98 -0.03 -16.26 16 15 C 0.16 2.24 3.45 -68.03 -0.23 2.01 16 16 H 0.11 1.87 7.55 -51.93 -0.39 1.48 16 17 C -0.15 -1.77 10.41 -35.70 -0.37 -2.14 16 18 C -0.16 -1.55 10.07 -35.67 -0.36 -1.91 16 19 C -0.06 -0.56 3.41 -91.84 -0.31 -0.87 16 20 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 21 C 0.49 5.43 7.64 36.01 0.27 5.71 16 22 O -0.50 -7.48 16.22 -18.75 -0.30 -7.79 16 23 O -0.52 -4.38 13.42 -39.25 -0.53 -4.91 16 24 C -0.12 -1.26 6.20 -25.01 -0.16 -1.42 16 25 C -0.21 -4.54 9.96 -26.69 -0.27 -4.80 16 26 C -0.14 -3.17 9.49 -26.69 -0.25 -3.42 16 27 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 28 H 0.13 2.84 8.14 -51.92 -0.42 2.41 16 29 H 0.10 1.68 8.09 -51.92 -0.42 1.26 16 30 H 0.41 4.76 8.66 -34.47 -0.30 4.46 16 31 H 0.14 1.61 8.03 -52.48 -0.42 1.19 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.41 1.94 9.10 45.56 0.41 2.36 16 34 H 0.10 1.24 6.95 -51.93 -0.36 0.88 16 35 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -35.46 350.03 -8.90 -44.36 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.39 Total: 9.82 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -2.04 Total: -29.37 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.69 Total: -39.48 kcal Atomic # 8 Polarization: -55.86 SS G_CDS: -2.86 Total: -58.72 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 52.12 SS G_CDS: -0.56 Total: 51.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.46 -8.90 -44.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577066756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.183 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds