Wall clock time and date at job start Tue Mar 31 2020 11:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99782 * 2 1 4 4 H 1.48500 * 109.47011 * 240.00070 * 3 2 1 5 5 H 1.48497 * 109.47605 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46788 * 120.00660 * 3 2 1 7 7 C 1.37874 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99827 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99819 * 359.97438 * 7 2 1 10 10 S 1.81406 * 109.47004 * 180.02562 * 9 7 2 11 11 O 1.42097 * 110.54242 * 68.37803 * 10 9 7 12 12 O 1.42100 * 110.54304 * 291.62521 * 10 9 7 13 13 N 1.65596 * 104.44797 * 180.02562 * 10 9 7 14 14 C 1.46505 * 119.99941 * 65.00238 * 13 10 9 15 15 C 1.50703 * 109.47064 * 164.99860 * 14 13 10 16 16 C 1.38270 * 119.94279 * 269.72592 * 15 14 13 17 17 C 1.38141 * 120.05541 * 179.72666 * 16 15 14 18 18 C 1.38732 * 119.94181 * 0.56721 * 17 16 15 19 19 O 1.35897 * 120.05770 * 179.68339 * 18 17 16 20 20 C 1.42905 * 116.99869 * 0.02562 * 19 18 17 21 21 C 1.53001 * 109.47209 * 180.02562 * 20 19 18 22 22 O 1.42900 * 109.47362 * 64.99360 * 21 20 19 23 23 C 1.38738 * 119.89002 * 359.70543 * 18 17 16 24 24 C 1.38141 * 119.94391 * 0.02562 * 23 18 17 25 25 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47055 * 60.00506 * 9 7 2 27 27 H 1.08991 * 109.47487 * 300.00284 * 9 7 2 28 28 H 0.96997 * 120.00145 * 244.99357 * 13 10 9 29 29 H 1.09002 * 109.47068 * 284.99828 * 14 13 10 30 30 H 1.09001 * 109.47372 * 44.99916 * 14 13 10 31 31 H 1.07999 * 119.97019 * 359.97438 * 16 15 14 32 32 H 1.07998 * 120.03323 * 180.24999 * 17 16 15 33 33 H 1.09003 * 109.46723 * 299.99560 * 20 19 18 34 34 H 1.08994 * 109.47110 * 59.99814 * 20 19 18 35 35 H 1.08995 * 109.47443 * 185.00013 * 21 20 19 36 36 H 1.09004 * 109.46739 * 304.99853 * 21 20 19 37 37 H 0.96706 * 113.99926 * 179.97438 * 22 21 20 38 38 H 1.07996 * 120.02821 * 179.97438 * 23 18 17 39 39 H 1.07993 * 119.97516 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 8 3.1265 -3.9383 1.2364 12 8 3.1266 -3.9383 -1.2375 13 7 1.4795 -5.2340 -0.0013 14 6 0.6204 -5.5259 -1.1516 15 6 0.1540 -6.9571 -1.0799 16 6 0.8971 -7.9561 -1.6813 17 6 0.4747 -9.2695 -1.6123 18 6 -0.7023 -9.5844 -0.9488 19 8 -1.1234 -10.8749 -0.8850 20 6 -0.3043 -11.8569 -1.5229 21 6 -0.9352 -13.2396 -1.3470 22 8 -2.1856 -13.2840 -2.0372 23 6 -1.4491 -8.5795 -0.3510 24 6 -1.0195 -7.2683 -0.4182 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 1.4917 -5.8352 0.7598 29 1 -0.2433 -4.8611 -1.1379 30 1 1.1823 -5.3725 -2.0729 31 1 1.8106 -7.7098 -2.2021 32 1 1.0575 -10.0500 -2.0787 33 1 -0.2231 -11.6275 -2.5854 34 1 0.6883 -11.8500 -1.0727 35 1 -0.2676 -13.9982 -1.7554 36 1 -1.0985 -13.4321 -0.2866 37 1 -2.6427 -14.1335 -1.9688 38 1 -2.3659 -8.8220 0.1656 39 1 -1.6002 -6.4857 0.0473 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579006024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:09 Heat of formation + Delta-G solvation = -173.529580 kcal Electronic energy + Delta-G solvation = -23139.851117 eV Core-core repulsion = 19366.495831 eV Total energy + Delta-G solvation = -3773.355287 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17894 -39.10255 -37.92665 -37.50419 -36.80462 -35.82526 -35.37241 -32.18830 -31.54513 -30.98758 -30.30478 -26.25538 -25.51977 -24.65108 -22.98844 -22.02982 -20.36311 -19.34425 -19.08271 -18.58421 -18.16421 -17.60243 -17.17435 -17.06354 -16.58586 -16.29138 -16.02242 -15.68718 -15.41310 -15.12014 -14.83884 -14.57458 -14.43988 -14.03310 -13.94775 -13.68072 -13.44039 -13.38962 -13.20358 -12.99613 -12.90429 -12.70405 -12.50091 -12.34324 -12.23724 -11.87842 -11.79696 -11.74833 -11.20681 -10.99489 -10.75189 -10.25782 -9.96878 -9.14580 -8.38726 -6.56120 -0.40082 0.37364 0.39436 1.39608 1.42357 1.50450 2.10972 2.20729 2.34107 2.80895 2.95457 3.05301 3.31492 3.53156 3.76559 3.82764 3.93791 4.03024 4.14868 4.28586 4.40214 4.44624 4.46859 4.50881 4.68150 4.74981 4.78256 4.80691 4.82637 5.00359 5.09570 5.27865 5.35455 5.36965 5.66503 5.76048 5.78713 6.20860 6.42955 6.54360 6.88532 7.15057 8.73329 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.036251 B = 0.002348 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.210321 B =11922.035772 C =12328.574454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.567 4.567 8 H 0.064 0.936 9 C -0.433 4.433 10 S 2.626 3.374 11 O -1.007 7.007 12 O -1.004 7.004 13 N -1.111 6.111 14 C 0.156 3.844 15 C -0.140 4.140 16 C -0.068 4.068 17 C -0.212 4.212 18 C 0.123 3.877 19 O -0.325 6.325 20 C 0.045 3.955 21 C 0.077 3.923 22 O -0.596 6.596 23 C -0.164 4.164 24 C -0.064 4.064 25 H 0.273 0.727 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.420 0.580 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.400 0.600 38 H 0.140 0.860 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 -25.526 -3.079 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.189 1.189 7 C -0.606 4.606 8 H 0.082 0.918 9 C -0.567 4.567 10 S 2.724 3.276 11 O -0.998 6.998 12 O -0.994 6.994 13 N -0.871 5.871 14 C 0.030 3.970 15 C -0.142 4.142 16 C -0.087 4.087 17 C -0.231 4.231 18 C 0.077 3.923 19 O -0.239 6.239 20 C -0.030 4.030 21 C -0.001 4.001 22 O -0.405 6.405 23 C -0.182 4.182 24 C -0.082 4.082 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.255 0.745 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.153 0.847 32 H 0.166 0.834 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.250 0.750 38 H 0.158 0.842 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.627 -24.806 -3.306 25.287 hybrid contribution -0.348 0.303 0.382 0.599 sum -3.975 -24.503 -2.924 24.995 Atomic orbital electron populations 1.70015 1.07399 1.28817 1.48099 1.25802 0.95965 1.03030 0.93004 0.85554 0.78731 0.77640 0.79729 1.18755 1.19512 1.18880 1.20742 0.93050 0.90900 1.55940 0.91806 1.27786 1.11222 1.11273 1.06369 1.04326 0.75698 0.75157 0.72418 1.93441 1.72778 1.86885 1.46671 1.93433 1.72250 1.86697 1.46989 1.55455 1.61960 1.41594 1.28087 1.20254 0.94403 0.93843 0.88457 1.19724 0.97067 0.94546 1.02818 1.21117 0.98952 0.91862 0.96761 1.21411 0.97995 0.98115 1.05546 1.19244 0.93375 0.84209 0.95425 1.86106 1.50648 1.13901 1.73242 1.23227 0.94601 0.86928 0.98220 1.22343 0.86199 0.94262 0.97269 1.86516 1.35728 1.41780 1.76465 1.20608 1.01996 0.91145 1.04462 1.21120 0.95059 0.96006 0.96036 0.91795 0.89818 0.90071 0.74479 0.89866 0.89950 0.84693 0.83399 0.91302 0.88567 0.88360 0.91980 0.75011 0.84237 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.18 13.29 21.45 0.28 -50.90 16 2 C 0.03 1.39 5.46 84.65 0.46 1.85 16 3 Si 0.96 42.63 29.54 68.60 2.03 44.65 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.57 -31.52 9.13 25.60 0.23 -31.29 16 8 H 0.06 3.49 7.71 -2.91 -0.02 3.47 16 9 C -0.43 -20.75 5.83 71.24 0.42 -20.34 16 10 S 2.63 109.30 5.38 -56.49 -0.30 109.00 16 11 O -1.01 -47.24 18.08 -127.65 -2.31 -49.55 16 12 O -1.00 -46.41 17.49 -127.65 -2.23 -48.64 16 13 N -1.11 -34.50 5.88 -190.77 -1.12 -35.62 16 14 C 0.16 4.28 6.25 85.63 0.54 4.81 16 15 C -0.14 -3.38 5.28 -19.85 -0.10 -3.48 16 16 C -0.07 -1.54 9.69 22.25 0.22 -1.32 16 17 C -0.21 -4.29 9.04 22.37 0.20 -4.09 16 18 C 0.12 2.73 6.69 22.51 0.15 2.88 16 19 O -0.32 -6.88 10.10 -87.75 -0.89 -7.77 16 20 C 0.04 0.61 5.12 71.98 0.37 0.98 16 21 C 0.08 0.73 7.43 71.98 0.53 1.27 16 22 O -0.60 -8.12 13.62 -144.34 -1.97 -10.08 16 23 C -0.16 -3.60 9.99 22.37 0.22 -3.37 16 24 C -0.06 -1.41 9.69 22.25 0.22 -1.20 16 25 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.08 3.94 8.14 -2.39 -0.02 3.92 16 27 H 0.08 3.90 8.14 -2.40 -0.02 3.88 16 28 H 0.42 11.46 8.61 -96.75 -0.83 10.62 16 29 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 30 H 0.08 2.32 7.63 -2.39 -0.02 2.30 16 31 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.15 2.21 6.30 -2.91 -0.02 2.19 16 33 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 34 H 0.10 0.90 7.66 -2.39 -0.02 0.88 16 35 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.40 1.48 9.12 -74.05 -0.68 0.81 16 38 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 39 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -76.89 352.12 -3.48 -80.37 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.42 Total: 21.83 kcal Atomic # 6 Polarization: -56.75 SS G_CDS: 3.45 Total: -53.30 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -0.84 Total: -86.51 kcal Atomic # 8 Polarization: -108.65 SS G_CDS: -7.39 Total: -116.04 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 109.30 SS G_CDS: -0.30 Total: 109.00 kcal Total: -76.89 -3.48 -80.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579006024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.163 kcal (2) G-P(sol) polarization free energy of solvation -76.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds