Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31377 * 1 3 3 Si 1.86800 * 119.99778 * 2 1 4 4 H 1.48497 * 109.47017 * 272.53364 * 3 2 1 5 5 H 1.48495 * 109.47400 * 32.53719 * 3 2 1 6 6 H 1.48509 * 109.46919 * 152.53639 * 3 2 1 7 7 C 1.39022 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00337 * 337.61659 * 7 2 1 9 9 N 1.36902 * 120.00340 * 157.61855 * 7 2 1 10 10 C 1.34776 * 120.00466 * 133.20302 * 9 7 2 11 11 O 1.21626 * 120.00019 * 186.01036 * 10 9 7 12 12 C 1.47434 * 119.99641 * 6.00930 * 10 9 7 13 13 C 1.39769 * 120.19607 * 325.47381 * 12 10 9 14 14 C 1.37770 * 119.90008 * 179.97438 * 13 12 10 15 15 C 1.38566 * 120.30522 * 359.97438 * 14 13 12 16 16 C 1.38075 * 120.39867 * 359.78258 * 15 14 13 17 17 C 1.50703 * 119.95239 * 180.23918 * 16 15 14 18 18 F 1.39908 * 109.47398 * 0.23097 * 17 16 15 19 19 F 1.39896 * 109.47443 * 120.23263 * 17 16 15 20 20 F 1.39903 * 109.47124 * 240.23547 * 17 16 15 21 21 C 1.38675 * 120.09373 * 0.47073 * 16 15 14 22 22 O 1.35659 * 120.15440 * 179.78731 * 21 16 15 23 23 C 1.46500 * 119.99838 * 313.20832 * 9 7 2 24 24 C 1.53006 * 117.49834 * 359.78438 * 23 9 7 25 25 C 1.53005 * 117.49547 * 291.12585 * 23 9 7 26 26 H 0.96999 * 120.00253 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.04686 * 0.02562 * 13 12 10 28 28 H 1.07997 * 119.84410 * 180.02562 * 14 13 12 29 29 H 1.08001 * 119.79847 * 180.02562 * 15 14 13 30 30 H 0.96697 * 114.00404 * 269.72103 * 22 21 16 31 31 H 1.09005 * 115.55507 * 145.45991 * 23 9 7 32 32 H 1.08995 * 117.49771 * 0.02562 * 24 23 9 33 33 H 1.08998 * 117.49911 * 145.02532 * 24 23 9 34 34 H 1.09007 * 117.49597 * 214.97917 * 25 23 9 35 35 H 1.09001 * 117.49812 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4416 2.0774 -1.3987 5 1 1.4731 2.6366 0.7530 6 1 3.5711 1.4253 0.6457 7 6 2.0089 -1.2039 0.0005 8 1 1.5301 -2.1039 0.3571 9 7 3.3006 -1.2488 -0.4509 10 6 4.2431 -1.8925 0.2660 11 8 5.4089 -1.8404 -0.0767 12 6 3.8608 -2.6597 1.4656 13 6 2.8143 -2.2168 2.2793 14 6 2.4618 -2.9387 3.3985 15 6 3.1399 -4.1031 3.7216 16 6 4.1723 -4.5548 2.9238 17 6 4.8993 -5.8254 3.2817 18 9 4.3492 -6.3644 4.4497 19 9 4.7699 -6.7469 2.2371 20 9 6.2538 -5.5446 3.4907 21 6 4.5443 -3.8383 1.7963 22 8 5.5614 -4.2786 1.0139 23 6 3.6584 -0.5971 -1.7132 24 6 2.5427 0.1128 -2.4828 25 6 3.1113 -1.2093 -3.0042 26 1 -0.4850 0.8400 -0.0004 27 1 2.2823 -1.3104 2.0306 28 1 1.6528 -2.5959 4.0265 29 1 2.8564 -4.6629 4.6007 30 1 6.4297 -3.9383 1.2691 31 1 4.6542 -0.1550 -1.7484 32 1 1.5427 0.0953 -2.0497 33 1 2.8046 1.0217 -3.0246 34 1 3.7470 -1.1697 -3.8889 35 1 2.4855 -2.0973 -2.9144 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579611822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = -147.302572 kcal Electronic energy + Delta-G solvation = -27129.769852 eV Core-core repulsion = 22680.251162 eV Total energy + Delta-G solvation = -4449.518690 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.99742 -47.55624 -47.41378 -40.11718 -38.54919 -36.54574 -36.26485 -33.58060 -32.14824 -31.33440 -29.77209 -25.82782 -25.24681 -23.88472 -22.03853 -21.78649 -21.18905 -19.50732 -18.59185 -18.32181 -18.25241 -17.71981 -17.18297 -16.03092 -15.58961 -15.39011 -15.15580 -14.56775 -14.38112 -14.24116 -14.12123 -13.99141 -13.90312 -13.66921 -13.61978 -13.53014 -13.07126 -12.67353 -12.48023 -12.12514 -12.03134 -11.74697 -11.48322 -11.19931 -11.03500 -10.76891 -10.43085 -10.21857 -9.99379 -9.45139 -9.22531 -8.85594 -8.73284 -8.48890 -7.72137 -6.69477 -4.36793 1.13484 1.25509 2.81160 3.01250 3.14241 3.24149 3.34411 3.76513 3.95641 4.01642 4.08924 4.26567 4.35769 4.42792 4.60787 4.90307 5.11333 5.34407 5.49791 5.59951 5.62243 5.70104 5.78644 5.91774 5.98814 6.23930 6.26662 6.39270 6.62104 6.68637 6.74898 6.94919 7.00814 7.24068 7.83765 7.88564 8.04633 8.71219 9.10537 9.47276 10.35673 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.004821 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.955865 B = 5806.583529 C = 6476.413908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.081 3.919 3 Si 0.864 3.136 4 H -0.254 1.254 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.366 4.366 8 H 0.105 0.895 9 N -0.431 5.431 10 C 0.537 3.463 11 O -0.581 6.581 12 C -0.131 4.131 13 C -0.017 4.017 14 C -0.151 4.151 15 C -0.050 4.050 16 C -0.239 4.239 17 C 0.519 3.481 18 F -0.182 7.182 19 F -0.173 7.173 20 F -0.182 7.182 21 C 0.197 3.803 22 O -0.480 6.480 23 C 0.069 3.931 24 C -0.191 4.191 25 C -0.185 4.185 26 H 0.279 0.721 27 H 0.176 0.824 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.399 0.601 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -4.268 5.762 8.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.129 4.129 3 Si 0.689 3.311 4 H -0.178 1.178 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.123 0.877 9 N -0.149 5.149 10 C 0.327 3.673 11 O -0.465 6.465 12 C -0.134 4.134 13 C -0.035 4.035 14 C -0.169 4.169 15 C -0.069 4.069 16 C -0.241 4.241 17 C 0.465 3.535 18 F -0.164 7.164 19 F -0.154 7.154 20 F -0.163 7.163 21 C 0.150 3.850 22 O -0.292 6.292 23 C -0.036 4.036 24 C -0.228 4.228 25 C -0.224 4.224 26 H 0.089 0.911 27 H 0.193 0.807 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.258 0.742 31 H 0.132 0.868 32 H 0.146 0.854 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.251 -4.461 5.272 8.110 hybrid contribution 0.594 0.790 0.235 1.016 sum 4.844 -3.670 5.507 8.202 Atomic orbital electron populations 1.69811 1.06324 1.28791 1.43094 1.25444 0.95002 0.98801 0.93641 0.87167 0.81018 0.82986 0.79933 1.17826 1.21438 1.18685 1.19008 0.87153 0.96692 1.46343 0.87745 1.42914 1.08416 1.47777 1.15834 1.17862 0.84817 0.81947 0.82693 1.90635 1.18414 1.66009 1.71432 1.20324 0.99233 0.95339 0.98523 1.22626 0.90841 1.00352 0.89640 1.21202 1.01482 0.95666 0.98593 1.20977 0.92485 0.95860 0.97572 1.20132 1.05013 0.98344 1.00651 1.18069 0.76908 0.84450 0.74077 1.93132 1.85522 1.87707 1.50021 1.93224 1.95596 1.68652 1.57911 1.93174 1.34631 1.93697 1.94798 1.18030 0.89956 0.89969 0.87007 1.84673 1.17779 1.71520 1.55211 1.21683 0.97064 1.01161 0.83657 1.23731 1.01033 0.94961 1.03106 1.23242 1.04117 0.97847 0.97158 0.91057 0.80678 0.84587 0.84638 0.74191 0.86820 0.85429 0.89400 0.89604 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.75 13.95 55.50 0.77 -19.98 16 2 C 0.08 1.89 3.23 -17.46 -0.06 1.84 16 3 Si 0.86 18.60 24.85 -169.99 -4.22 14.38 16 4 H -0.25 -5.16 5.36 56.52 0.30 -4.86 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.37 -8.62 5.95 -15.00 -0.09 -8.70 16 8 H 0.11 2.62 6.76 -52.49 -0.35 2.27 16 9 N -0.43 -9.92 2.30 -108.93 -0.25 -10.17 16 10 C 0.54 12.35 7.24 -12.52 -0.09 12.26 16 11 O -0.58 -14.11 15.73 -12.69 -0.20 -14.31 16 12 C -0.13 -2.64 5.52 -104.84 -0.58 -3.22 16 13 C -0.02 -0.30 7.84 -39.18 -0.31 -0.61 16 14 C -0.15 -2.25 10.02 -39.63 -0.40 -2.64 16 15 C -0.05 -0.71 9.42 -39.52 -0.37 -1.09 16 16 C -0.24 -3.82 5.38 -104.52 -0.56 -4.38 16 17 C 0.52 7.71 2.99 36.01 0.11 7.82 16 18 F -0.18 -2.47 15.96 2.25 0.04 -2.44 16 19 F -0.17 -2.78 16.95 2.25 0.04 -2.75 16 20 F -0.18 -2.62 16.95 2.25 0.04 -2.58 16 21 C 0.20 3.62 6.56 -38.68 -0.25 3.37 16 22 O -0.48 -8.69 11.03 -36.62 -0.40 -9.09 16 23 C 0.07 1.47 4.60 -67.92 -0.31 1.16 16 24 C -0.19 -3.79 6.50 -26.69 -0.17 -3.97 16 25 C -0.19 -3.53 10.41 -26.69 -0.28 -3.80 16 26 H 0.28 6.43 8.31 -40.82 -0.34 6.09 16 27 H 0.18 3.48 5.43 -52.49 -0.29 3.19 16 28 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.14 1.54 7.13 -52.49 -0.37 1.16 16 30 H 0.40 5.88 9.06 45.56 0.41 6.29 16 31 H 0.11 2.39 7.81 -51.93 -0.41 1.99 16 32 H 0.13 2.83 4.83 -51.93 -0.25 2.58 16 33 H 0.09 1.57 7.52 -51.93 -0.39 1.17 16 34 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 35 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 LS Contribution 304.15 15.07 4.58 4.58 Total: -1.00 -26.98 304.15 -5.12 -32.11 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -2.15 Total: 12.22 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -3.36 Total: -1.97 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 0.52 Total: -30.15 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.60 Total: -23.40 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.11 Total: -7.76 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.22 Total: 14.38 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.98 -5.12 -32.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579611822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.197 kcal (2) G-P(sol) polarization free energy of solvation -26.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds