Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31377 * 1 3 3 Si 1.86800 * 119.99778 * 2 1 4 4 H 1.48497 * 109.47017 * 272.53364 * 3 2 1 5 5 H 1.48495 * 109.47400 * 32.53719 * 3 2 1 6 6 H 1.48509 * 109.46919 * 152.53639 * 3 2 1 7 7 C 1.39022 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00337 * 337.61659 * 7 2 1 9 9 N 1.36902 * 120.00340 * 157.61855 * 7 2 1 10 10 C 1.34776 * 120.00466 * 133.20302 * 9 7 2 11 11 O 1.21626 * 120.00019 * 186.01036 * 10 9 7 12 12 C 1.47434 * 119.99641 * 6.00930 * 10 9 7 13 13 C 1.39769 * 120.19607 * 325.47381 * 12 10 9 14 14 C 1.37770 * 119.90008 * 179.97438 * 13 12 10 15 15 C 1.38566 * 120.30522 * 359.97438 * 14 13 12 16 16 C 1.38075 * 120.39867 * 359.78258 * 15 14 13 17 17 C 1.50703 * 119.95239 * 180.23918 * 16 15 14 18 18 F 1.39908 * 109.47398 * 0.23097 * 17 16 15 19 19 F 1.39896 * 109.47443 * 120.23263 * 17 16 15 20 20 F 1.39903 * 109.47124 * 240.23547 * 17 16 15 21 21 C 1.38675 * 120.09373 * 0.47073 * 16 15 14 22 22 O 1.35659 * 120.15440 * 179.78731 * 21 16 15 23 23 C 1.46500 * 119.99838 * 313.20832 * 9 7 2 24 24 C 1.53006 * 117.49834 * 359.78438 * 23 9 7 25 25 C 1.53005 * 117.49547 * 291.12585 * 23 9 7 26 26 H 0.96999 * 120.00253 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.04686 * 0.02562 * 13 12 10 28 28 H 1.07997 * 119.84410 * 180.02562 * 14 13 12 29 29 H 1.08001 * 119.79847 * 180.02562 * 15 14 13 30 30 H 0.96697 * 114.00404 * 269.72103 * 22 21 16 31 31 H 1.09005 * 115.55507 * 145.45991 * 23 9 7 32 32 H 1.08995 * 117.49771 * 0.02562 * 24 23 9 33 33 H 1.08998 * 117.49911 * 145.02532 * 24 23 9 34 34 H 1.09007 * 117.49597 * 214.97917 * 25 23 9 35 35 H 1.09001 * 117.49812 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4416 2.0774 -1.3987 5 1 1.4731 2.6366 0.7530 6 1 3.5711 1.4253 0.6457 7 6 2.0089 -1.2039 0.0005 8 1 1.5301 -2.1039 0.3571 9 7 3.3006 -1.2488 -0.4509 10 6 4.2431 -1.8925 0.2660 11 8 5.4089 -1.8404 -0.0767 12 6 3.8608 -2.6597 1.4656 13 6 2.8143 -2.2168 2.2793 14 6 2.4618 -2.9387 3.3985 15 6 3.1399 -4.1031 3.7216 16 6 4.1723 -4.5548 2.9238 17 6 4.8993 -5.8254 3.2817 18 9 4.3492 -6.3644 4.4497 19 9 4.7699 -6.7469 2.2371 20 9 6.2538 -5.5446 3.4907 21 6 4.5443 -3.8383 1.7963 22 8 5.5614 -4.2786 1.0139 23 6 3.6584 -0.5971 -1.7132 24 6 2.5427 0.1128 -2.4828 25 6 3.1113 -1.2093 -3.0042 26 1 -0.4850 0.8400 -0.0004 27 1 2.2823 -1.3104 2.0306 28 1 1.6528 -2.5959 4.0265 29 1 2.8564 -4.6629 4.6007 30 1 6.4297 -3.9383 1.2691 31 1 4.6542 -0.1550 -1.7484 32 1 1.5427 0.0953 -2.0497 33 1 2.8046 1.0217 -3.0246 34 1 3.7470 -1.1697 -3.8889 35 1 2.4855 -2.0973 -2.9144 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579611822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = -162.954781 kcal Electronic energy + Delta-G solvation = -27130.448582 eV Core-core repulsion = 22680.251162 eV Total energy + Delta-G solvation = -4450.197421 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.17273 -48.69567 -48.62392 -41.63266 -40.10029 -38.09877 -37.77142 -35.27765 -33.90385 -32.74807 -31.12570 -27.32421 -26.81184 -25.37175 -23.56919 -23.12787 -22.71423 -21.17786 -20.02674 -19.56454 -19.48841 -19.09149 -18.73507 -17.59872 -17.25623 -16.73991 -16.62000 -16.18106 -15.75522 -15.60161 -15.44970 -15.42274 -15.14297 -15.06442 -14.81859 -14.80046 -14.65736 -14.44362 -13.81897 -13.70069 -13.39265 -13.26607 -12.96169 -12.75760 -12.62264 -12.37370 -12.01774 -11.82068 -11.65019 -11.07316 -10.96613 -10.50670 -10.21180 -9.84001 -9.46780 -8.52474 -6.21010 -0.20817 -0.08074 1.28835 1.38801 1.48745 1.59003 1.80764 2.22144 2.32138 2.53740 2.68478 2.74127 2.97905 3.08205 3.21132 3.40596 3.79682 3.94700 4.06703 4.11123 4.16782 4.21957 4.32345 4.58374 4.63797 4.74933 4.80537 4.99722 5.11346 5.29881 5.33963 5.37715 5.48390 5.67933 6.05068 6.22067 6.55492 6.89959 7.31453 7.69948 8.56220 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.004821 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.955865 B = 5806.583529 C = 6476.413908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.232 1.232 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.359 4.359 8 H 0.082 0.918 9 N -0.440 5.440 10 C 0.526 3.474 11 O -0.604 6.604 12 C -0.164 4.164 13 C -0.027 4.027 14 C -0.139 4.139 15 C -0.031 4.031 16 C -0.241 4.241 17 C 0.526 3.474 18 F -0.170 7.170 19 F -0.181 7.181 20 F -0.179 7.179 21 C 0.189 3.811 22 O -0.493 6.493 23 C 0.040 3.960 24 C -0.184 4.184 25 C -0.168 4.168 26 H 0.284 0.716 27 H 0.155 0.845 28 H 0.170 0.830 29 H 0.175 0.825 30 H 0.410 0.590 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -4.531 6.600 9.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.155 1.155 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.485 4.485 8 H 0.100 0.900 9 N -0.158 5.158 10 C 0.317 3.683 11 O -0.490 6.490 12 C -0.167 4.167 13 C -0.046 4.046 14 C -0.157 4.157 15 C -0.049 4.049 16 C -0.243 4.243 17 C 0.472 3.528 18 F -0.151 7.151 19 F -0.162 7.162 20 F -0.160 7.160 21 C 0.142 3.858 22 O -0.306 6.306 23 C -0.064 4.064 24 C -0.221 4.221 25 C -0.207 4.207 26 H 0.094 0.906 27 H 0.172 0.828 28 H 0.188 0.812 29 H 0.192 0.808 30 H 0.270 0.730 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.169 -4.719 6.100 8.767 hybrid contribution 0.642 0.783 0.041 1.013 sum 4.811 -3.937 6.141 8.738 Atomic orbital electron populations 1.69836 1.07183 1.29553 1.44555 1.25691 0.95152 1.00226 0.93211 0.86588 0.78933 0.80906 0.80860 1.15512 1.21205 1.20955 1.18737 0.87190 0.96067 1.46527 0.90034 1.43030 1.08145 1.48077 1.16594 1.18407 0.84592 0.81853 0.83448 1.90586 1.19139 1.66893 1.72411 1.20280 1.01268 0.96675 0.98521 1.22443 0.90749 1.00317 0.91059 1.21509 1.01705 0.95107 0.97385 1.21411 0.90615 0.95113 0.97788 1.20286 1.05500 0.98519 0.99989 1.17850 0.76945 0.83804 0.74217 1.93158 1.85334 1.87459 1.49165 1.93212 1.95648 1.68871 1.58495 1.93183 1.34411 1.93656 1.94761 1.18118 0.89948 0.89908 0.87780 1.84630 1.18506 1.71583 1.55895 1.21885 0.97697 1.02853 0.83997 1.23691 0.99266 0.96460 1.02682 1.23276 1.03485 0.96834 0.97064 0.90610 0.82785 0.81239 0.80770 0.72971 0.86784 0.87588 0.86773 0.86276 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.27 13.95 21.68 0.30 -42.97 16 2 C 0.06 3.06 3.23 84.95 0.27 3.33 16 3 Si 0.90 38.14 24.85 68.60 1.70 39.84 16 4 H -0.23 -8.88 5.36 99.48 0.53 -8.35 16 5 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.36 -17.32 5.95 84.09 0.50 -16.82 16 8 H 0.08 4.26 6.76 -2.91 -0.02 4.24 16 9 N -0.44 -20.69 2.30 -616.78 -1.42 -22.11 16 10 C 0.53 24.88 7.24 86.67 0.63 25.50 16 11 O -0.60 -30.15 15.73 13.05 0.21 -29.95 16 12 C -0.16 -6.74 5.52 -20.01 -0.11 -6.85 16 13 C -0.03 -1.00 7.84 22.53 0.18 -0.82 16 14 C -0.14 -3.83 10.02 22.24 0.22 -3.61 16 15 C -0.03 -0.78 9.42 22.31 0.21 -0.57 16 16 C -0.24 -7.24 5.38 -19.80 -0.11 -7.34 16 17 C 0.53 14.48 2.99 71.24 0.21 14.69 16 18 F -0.17 -4.04 15.96 44.97 0.72 -3.32 16 19 F -0.18 -5.56 16.95 44.97 0.76 -4.80 16 20 F -0.18 -4.84 16.95 44.97 0.76 -4.08 16 21 C 0.19 6.91 6.56 22.85 0.15 7.06 16 22 O -0.49 -17.96 11.03 -72.60 -0.80 -18.76 16 23 C 0.04 1.69 4.60 45.00 0.21 1.90 16 24 C -0.18 -7.06 6.50 30.62 0.20 -6.86 16 25 C -0.17 -6.23 10.41 30.62 0.32 -5.91 16 26 H 0.28 13.08 8.31 -92.71 -0.77 12.31 16 27 H 0.15 6.30 5.43 -2.91 -0.02 6.29 16 28 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 29 H 0.17 3.07 7.13 -2.91 -0.02 3.05 16 30 H 0.41 12.26 9.06 -74.06 -0.67 11.59 16 31 H 0.11 4.79 7.81 -2.38 -0.02 4.77 16 32 H 0.11 4.63 4.83 -2.39 -0.01 4.62 16 33 H 0.11 3.75 7.52 -2.39 -0.02 3.73 16 34 H 0.12 3.59 8.14 -2.38 -0.02 3.57 16 35 H 0.08 3.22 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -58.80 304.15 5.46 -53.35 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.34 Total: 29.09 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 2.88 Total: 3.70 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -1.12 Total: -65.08 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.60 Total: -48.71 kcal Atomic # 9 Polarization: -14.44 SS G_CDS: 2.24 Total: -12.20 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.70 Total: 39.84 kcal Total: -58.80 5.46 -53.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579611822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.607 kcal (2) G-P(sol) polarization free energy of solvation -58.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds