Wall clock time and date at job start Tue Mar 31 2020 11:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40433 * 120.35320 * 150.17524 * 3 2 1 5 5 N 1.30849 * 121.62857 * 180.27541 * 4 3 2 6 6 C 1.34029 * 121.99915 * 359.47487 * 5 4 3 7 7 C 1.40552 * 120.74080 * 180.26328 * 6 5 4 8 8 Cl 1.73601 * 120.10787 * 0.29745 * 7 6 5 9 9 C 1.36327 * 119.79414 * 180.29349 * 7 6 5 10 10 C 1.39193 * 121.00880 * 359.96169 * 9 7 6 11 11 C 1.36294 * 120.78629 * 0.02562 * 10 9 7 12 12 C 1.40213 * 119.67090 * 0.02562 * 11 10 9 13 13 C 1.40231 * 120.35521 * 330.19188 * 3 2 1 14 14 N 1.37923 * 121.11823 * 359.96135 * 13 3 2 15 15 C 1.46899 * 110.99935 * 59.99615 * 14 13 3 16 16 C 1.53004 * 109.47059 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47279 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47246 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99677 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00247 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00179 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46940 * 90.00125 * 22 20 18 24 24 H 1.48502 * 109.46734 * 209.99877 * 22 20 18 25 25 H 1.48496 * 109.47119 * 329.99564 * 22 20 18 26 26 H 1.08002 * 119.18158 * 359.97438 * 4 3 2 27 27 H 1.07996 * 119.49310 * 179.97438 * 9 7 6 28 28 H 1.08001 * 119.60742 * 179.97438 * 10 9 7 29 29 H 1.08004 * 120.16921 * 180.02562 * 11 10 9 30 30 H 1.00903 * 110.99807 * 296.04194 * 14 13 3 31 31 H 1.09000 * 109.47464 * 300.00214 * 15 14 13 32 32 H 1.09005 * 109.47072 * 60.00256 * 15 14 13 33 33 H 1.09003 * 109.46511 * 300.00326 * 16 15 14 34 34 H 1.08998 * 109.47074 * 59.99446 * 16 15 14 35 35 H 1.09000 * 109.46480 * 299.99572 * 17 16 15 36 36 H 1.08990 * 109.47641 * 59.99471 * 17 16 15 37 37 H 0.96999 * 120.00368 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2772 1.0523 -0.6027 5 7 4.5853 1.0755 -0.6218 6 6 5.3211 0.1060 -0.0605 7 6 6.7253 0.1604 -0.0918 8 17 7.5282 1.4964 -0.8561 9 6 7.4548 -0.8393 0.4800 10 6 6.8307 -1.9188 1.0986 11 6 5.4713 -2.0042 1.1479 12 6 4.6909 -0.9935 0.5686 13 6 3.2771 -1.0490 0.6015 14 7 2.6189 -2.1004 1.2046 15 6 1.7646 -2.8084 0.2419 16 6 1.0522 -3.9647 0.9463 17 6 0.1629 -4.7025 -0.0565 18 6 -0.5393 -5.8411 0.6375 19 1 -0.3680 -6.0208 1.6886 20 6 -1.4003 -6.6534 -0.0694 21 7 -1.6093 -6.4343 -1.3493 22 14 -2.2702 -8.0652 0.7907 23 1 -3.5657 -7.5884 1.3381 24 1 -2.5166 -9.1604 -0.1814 25 1 -1.4198 -8.5690 1.8989 26 1 2.7292 1.8594 -1.0661 27 1 8.5334 -0.7928 0.4528 28 1 7.4307 -2.6985 1.5440 29 1 4.9974 -2.8460 1.6308 30 1 2.0833 -1.7837 1.9989 31 1 1.0242 -2.1184 -0.1629 32 1 2.3785 -3.1996 -0.5695 33 1 1.7925 -4.6547 1.3513 34 1 0.4384 -3.5732 1.7575 35 1 -0.5773 -4.0127 -0.4618 36 1 0.7769 -5.0941 -0.8674 37 1 -2.2154 -7.0056 -1.8465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580831003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:33 Heat of formation + Delta-G solvation = 74.005762 kcal Electronic energy + Delta-G solvation = -22199.253386 eV Core-core repulsion = 18774.190002 eV Total energy + Delta-G solvation = -3425.063384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44326 -38.52334 -37.06822 -36.69275 -36.18811 -34.07422 -32.37890 -31.31246 -30.87499 -29.65950 -26.57831 -24.88501 -24.26962 -22.92425 -21.64304 -20.41075 -20.10763 -18.12471 -18.06181 -16.63491 -16.43757 -15.78090 -15.25078 -15.17394 -14.80617 -14.65025 -14.44213 -14.12130 -14.06465 -13.68627 -13.37567 -13.01472 -12.52238 -12.38997 -12.32485 -12.09743 -11.86889 -11.72944 -11.70457 -11.11418 -10.92659 -10.78149 -10.61830 -10.25250 -10.09092 -9.86573 -9.47370 -9.25142 -9.16119 -8.96769 -8.41782 -8.39219 -6.03898 -4.06919 -0.27078 0.19934 1.32281 1.84549 2.24787 2.45621 3.06759 3.29657 3.35887 3.38689 3.44672 3.58455 3.68078 3.82764 4.25540 4.42620 4.47776 4.58379 4.62404 4.89027 5.00388 5.22802 5.27453 5.32163 5.44430 5.51349 5.55033 5.74239 5.95240 6.01137 6.03423 6.28361 6.40558 6.51460 6.86932 6.93046 7.06849 7.24542 7.45970 7.60079 7.72324 7.94466 8.36002 8.99682 9.57536 11.07505 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021024 B = 0.002778 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.521085 B =10076.334239 C =10935.715016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C 0.244 3.756 3 C -0.131 4.131 4 C 0.193 3.807 5 N -0.470 5.470 6 C 0.156 3.844 7 C -0.030 4.030 8 Cl -0.047 7.047 9 C -0.073 4.073 10 C -0.124 4.124 11 C -0.050 4.050 12 C -0.089 4.089 13 C 0.240 3.760 14 N -0.652 5.652 15 C 0.054 3.946 16 C -0.105 4.105 17 C 0.023 3.977 18 C -0.521 4.521 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.170 0.830 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.366 0.634 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.014 0.986 36 H 0.017 0.983 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.140 14.983 4.218 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.060 5.060 2 C -0.072 4.072 3 C -0.140 4.140 4 C 0.017 3.983 5 N -0.177 5.177 6 C 0.034 3.966 7 C -0.057 4.057 8 Cl -0.017 7.017 9 C -0.094 4.094 10 C -0.142 4.142 11 C -0.069 4.069 12 C -0.092 4.092 13 C 0.132 3.868 14 N -0.287 5.287 15 C -0.071 4.071 16 C -0.143 4.143 17 C -0.014 4.014 18 C -0.559 4.559 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 H 0.187 0.813 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.171 0.829 30 H 0.193 0.807 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 19.390 15.242 3.569 24.921 hybrid contribution -1.264 -0.745 0.502 1.551 sum 18.127 14.497 4.070 23.565 Atomic orbital electron populations 1.81392 1.11378 1.06518 1.06668 1.25134 0.92140 0.94661 0.95285 1.17997 0.86393 1.00365 1.09197 1.22885 0.89326 0.94712 0.91388 1.68088 1.06590 1.25420 1.17585 1.18513 0.92564 0.90596 0.94933 1.20369 0.90134 0.92912 1.02298 1.98378 1.78305 1.45208 1.79846 1.20972 1.00934 0.92194 0.95251 1.20946 0.94869 0.98195 1.00172 1.21261 0.93280 0.97320 0.95028 1.18527 0.92008 0.96676 1.02020 1.19160 0.91943 0.87194 0.88520 1.57664 1.35641 1.23858 1.11512 1.22543 0.93999 0.96356 0.94232 1.21657 0.98363 0.94791 0.99478 1.19045 0.93838 0.94709 0.93821 1.21188 1.25606 1.13122 0.96000 0.92595 1.25029 0.96768 0.97807 0.94851 1.69964 1.36740 1.39203 1.07484 0.86581 0.80007 0.81992 0.79359 1.20663 1.21179 1.19810 0.81269 0.84101 0.84160 0.82913 0.80689 0.94130 0.90308 0.91953 0.93251 0.96728 0.96457 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -6.19 18.17 41.84 0.76 -5.43 16 2 C 0.24 3.27 12.38 -22.47 -0.28 2.99 16 3 C -0.13 -1.48 5.65 -106.40 -0.60 -2.08 16 4 C 0.19 1.92 10.87 -17.14 -0.19 1.74 16 5 N -0.47 -5.29 9.75 -10.73 -0.10 -5.39 16 6 C 0.16 1.73 6.60 -84.80 -0.56 1.17 16 7 C -0.03 -0.29 6.33 -39.40 -0.25 -0.54 16 8 Cl -0.05 -0.45 28.50 -51.86 -1.48 -1.93 16 9 C -0.07 -0.55 9.71 -39.92 -0.39 -0.94 16 10 C -0.12 -0.88 9.96 -39.93 -0.40 -1.28 16 11 C -0.05 -0.45 9.56 -39.54 -0.38 -0.83 16 12 C -0.09 -0.95 5.75 -106.67 -0.61 -1.57 16 13 C 0.24 2.76 5.62 -83.12 -0.47 2.29 16 14 N -0.65 -8.01 5.42 -57.74 -0.31 -8.32 16 15 C 0.05 0.87 5.27 -3.82 -0.02 0.85 16 16 C -0.10 -2.03 5.41 -26.73 -0.14 -2.17 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 19 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 22 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 29 H 0.15 1.33 7.59 -52.48 -0.40 0.93 16 30 H 0.37 4.16 8.72 -39.29 -0.34 3.82 16 31 H 0.04 0.69 5.01 -51.93 -0.26 0.43 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -31.83 340.90 -9.04 -40.87 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.92 Total: -1.97 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -4.83 Total: -13.32 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 1.08 Total: -45.39 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.48 Total: -1.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.83 -9.04 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580831003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.880 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds