Wall clock time and date at job start Tue Mar 31 2020 11:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40433 * 120.35320 * 150.17524 * 3 2 1 5 5 N 1.30849 * 121.62857 * 180.27541 * 4 3 2 6 6 C 1.34029 * 121.99915 * 359.47487 * 5 4 3 7 7 C 1.40552 * 120.74080 * 180.26328 * 6 5 4 8 8 Cl 1.73601 * 120.10787 * 0.29745 * 7 6 5 9 9 C 1.36327 * 119.79414 * 180.29349 * 7 6 5 10 10 C 1.39193 * 121.00880 * 359.96169 * 9 7 6 11 11 C 1.36294 * 120.78629 * 0.02562 * 10 9 7 12 12 C 1.40213 * 119.67090 * 0.02562 * 11 10 9 13 13 C 1.40231 * 120.35521 * 330.19188 * 3 2 1 14 14 N 1.37923 * 121.11823 * 359.96135 * 13 3 2 15 15 C 1.46899 * 110.99935 * 59.99615 * 14 13 3 16 16 C 1.53004 * 109.47059 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47279 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47246 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99677 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00247 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00179 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46940 * 90.00125 * 22 20 18 24 24 H 1.48502 * 109.46734 * 209.99877 * 22 20 18 25 25 H 1.48496 * 109.47119 * 329.99564 * 22 20 18 26 26 H 1.08002 * 119.18158 * 359.97438 * 4 3 2 27 27 H 1.07996 * 119.49310 * 179.97438 * 9 7 6 28 28 H 1.08001 * 119.60742 * 179.97438 * 10 9 7 29 29 H 1.08004 * 120.16921 * 180.02562 * 11 10 9 30 30 H 1.00903 * 110.99807 * 296.04194 * 14 13 3 31 31 H 1.09000 * 109.47464 * 300.00214 * 15 14 13 32 32 H 1.09005 * 109.47072 * 60.00256 * 15 14 13 33 33 H 1.09003 * 109.46511 * 300.00326 * 16 15 14 34 34 H 1.08998 * 109.47074 * 59.99446 * 16 15 14 35 35 H 1.09000 * 109.46480 * 299.99572 * 17 16 15 36 36 H 1.08990 * 109.47641 * 59.99471 * 17 16 15 37 37 H 0.96999 * 120.00368 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2772 1.0523 -0.6027 5 7 4.5853 1.0755 -0.6218 6 6 5.3211 0.1060 -0.0605 7 6 6.7253 0.1604 -0.0918 8 17 7.5282 1.4964 -0.8561 9 6 7.4548 -0.8393 0.4800 10 6 6.8307 -1.9188 1.0986 11 6 5.4713 -2.0042 1.1479 12 6 4.6909 -0.9935 0.5686 13 6 3.2771 -1.0490 0.6015 14 7 2.6189 -2.1004 1.2046 15 6 1.7646 -2.8084 0.2419 16 6 1.0522 -3.9647 0.9463 17 6 0.1629 -4.7025 -0.0565 18 6 -0.5393 -5.8411 0.6375 19 1 -0.3680 -6.0208 1.6886 20 6 -1.4003 -6.6534 -0.0694 21 7 -1.6093 -6.4343 -1.3493 22 14 -2.2702 -8.0652 0.7907 23 1 -3.5657 -7.5884 1.3381 24 1 -2.5166 -9.1604 -0.1814 25 1 -1.4198 -8.5690 1.8989 26 1 2.7292 1.8594 -1.0661 27 1 8.5334 -0.7928 0.4528 28 1 7.4307 -2.6985 1.5440 29 1 4.9974 -2.8460 1.6308 30 1 2.0833 -1.7837 1.9989 31 1 1.0242 -2.1184 -0.1629 32 1 2.3785 -3.1996 -0.5695 33 1 1.7925 -4.6547 1.3513 34 1 0.4384 -3.5732 1.7575 35 1 -0.5773 -4.0127 -0.4618 36 1 0.7769 -5.0941 -0.8674 37 1 -2.2154 -7.0056 -1.8465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580831003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:32 Heat of formation + Delta-G solvation = 55.615462 kcal Electronic energy + Delta-G solvation = -22200.050850 eV Core-core repulsion = 18774.190002 eV Total energy + Delta-G solvation = -3425.860847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.26497 -39.43989 -37.97896 -37.55836 -37.17173 -35.83796 -33.96739 -32.19258 -31.99678 -30.62866 -28.27167 -25.87491 -25.11132 -24.49415 -22.50916 -22.11190 -20.95523 -18.98982 -18.90506 -18.55793 -17.42217 -16.87134 -16.56039 -16.18496 -16.04700 -15.67404 -15.43573 -15.32323 -14.89540 -14.82430 -14.48317 -14.31854 -14.09202 -13.72105 -13.47094 -13.29220 -13.01670 -12.79889 -12.69568 -12.57580 -12.44753 -12.37948 -11.83096 -11.67184 -11.53837 -11.28332 -11.01112 -10.89132 -10.58749 -10.06470 -9.99999 -9.17343 -8.22784 -6.34296 -1.09944 -0.55158 0.54566 1.14252 1.38434 1.38877 1.40197 1.45304 1.51414 2.14578 2.38093 2.50003 2.56843 2.87740 3.09163 3.10963 3.45446 3.70156 3.78648 3.88672 4.01496 4.12733 4.24068 4.35112 4.50556 4.52271 4.56378 4.81501 4.85996 4.94455 5.09962 5.14989 5.24548 5.37187 5.47024 5.59672 5.65703 5.70257 5.81223 6.00642 6.20383 6.20656 6.64341 6.82958 7.35554 8.89315 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021024 B = 0.002778 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.521085 B =10076.334239 C =10935.715016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.270 3.730 3 C -0.138 4.138 4 C 0.197 3.803 5 N -0.481 5.481 6 C 0.142 3.858 7 C -0.049 4.049 8 Cl -0.050 7.050 9 C -0.058 4.058 10 C -0.108 4.108 11 C -0.061 4.061 12 C -0.096 4.096 13 C 0.235 3.765 14 N -0.638 5.638 15 C 0.071 3.929 16 C -0.089 4.089 17 C 0.027 3.973 18 C -0.541 4.541 19 H 0.064 0.936 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.275 1.275 24 H -0.282 1.282 25 H -0.258 1.258 26 H 0.194 0.806 27 H 0.170 0.830 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.372 0.628 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.051 0.949 35 H -0.019 1.019 36 H -0.006 1.006 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.339 14.413 5.731 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.045 4.045 3 C -0.146 4.146 4 C 0.021 3.979 5 N -0.188 5.188 6 C 0.020 3.980 7 C -0.077 4.077 8 Cl -0.021 7.021 9 C -0.078 4.078 10 C -0.126 4.126 11 C -0.080 4.080 12 C -0.099 4.099 13 C 0.127 3.873 14 N -0.272 5.272 15 C -0.056 4.056 16 C -0.127 4.127 17 C -0.011 4.011 18 C -0.579 4.579 19 H 0.082 0.918 20 C -0.200 4.200 21 N -0.576 5.576 22 Si 0.790 3.210 23 H -0.201 1.201 24 H -0.208 1.208 25 H -0.182 1.182 26 H 0.211 0.789 27 H 0.188 0.812 28 H 0.192 0.808 29 H 0.174 0.826 30 H 0.200 0.800 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.070 0.930 35 H -0.001 1.001 36 H 0.013 0.987 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 21.612 14.689 5.101 26.624 hybrid contribution -1.780 -0.547 0.026 1.862 sum 19.832 14.142 5.127 24.892 Atomic orbital electron populations 1.81407 1.12922 1.08339 1.08721 1.25382 0.92360 0.93085 0.93696 1.18021 0.85102 1.01227 1.10295 1.23192 0.89102 0.94770 0.90856 1.68134 1.06905 1.25819 1.17976 1.18771 0.93330 0.90691 0.95176 1.20568 0.89857 0.93762 1.03468 1.98375 1.78144 1.45561 1.80033 1.21374 1.02351 0.90985 0.93122 1.21335 0.94310 0.98388 0.98547 1.21412 0.94177 0.97054 0.95348 1.18588 0.91497 0.97307 1.02526 1.19173 0.92424 0.86869 0.88883 1.57489 1.34592 1.24419 1.10729 1.22139 0.93851 0.95274 0.94345 1.21362 0.97771 0.95632 0.97958 1.18930 0.93600 0.94113 0.94456 1.21674 1.25833 1.13808 0.96576 0.91756 1.26019 0.97655 1.00835 0.95534 1.70107 1.37647 1.40585 1.09231 0.85434 0.78816 0.78284 0.78463 1.20079 1.20769 1.18235 0.78926 0.81242 0.80806 0.82572 0.80014 0.95555 0.90621 0.90937 0.92993 1.00098 0.98716 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.63 18.17 19.00 0.35 -14.28 16 2 C 0.27 7.37 12.38 88.33 1.09 8.46 16 3 C -0.14 -3.07 5.65 -21.01 -0.12 -3.19 16 4 C 0.20 3.78 10.87 85.37 0.93 4.71 16 5 N -0.48 -10.37 9.75 -187.86 -1.83 -12.20 16 6 C 0.14 2.95 6.60 40.17 0.27 3.21 16 7 C -0.05 -0.86 6.33 22.39 0.14 -0.71 16 8 Cl -0.05 -0.89 28.50 -2.72 -0.08 -0.97 16 9 C -0.06 -0.67 9.71 22.05 0.21 -0.46 16 10 C -0.11 -1.14 9.96 22.05 0.22 -0.92 16 11 C -0.06 -0.95 9.56 22.30 0.21 -0.74 16 12 C -0.10 -1.91 5.75 -21.19 -0.12 -2.04 16 13 C 0.23 5.20 5.62 39.48 0.22 5.42 16 14 N -0.64 -15.15 5.42 -336.58 -1.82 -16.98 16 15 C 0.07 2.26 5.27 86.30 0.45 2.72 16 16 C -0.09 -3.47 5.41 30.59 0.17 -3.30 16 17 C 0.03 1.40 4.97 29.85 0.15 1.55 16 18 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 19 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 20 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 21 N -0.94 -57.70 13.29 21.44 0.28 -57.41 16 22 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 26 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 27 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 28 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 29 H 0.16 2.33 7.59 -2.91 -0.02 2.31 16 30 H 0.37 8.15 8.72 -89.69 -0.78 7.37 16 31 H 0.03 0.93 5.01 -2.39 -0.01 0.92 16 32 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -70.43 340.90 3.79 -66.64 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 0.34 Total: 4.28 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 4.52 Total: -15.42 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -3.03 Total: -100.87 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -70.43 3.79 -66.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580831003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.254 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds