Wall clock time and date at job start Tue Mar 31 2020 11:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99732 * 2 1 4 4 H 1.48505 * 109.47158 * 269.99757 * 3 2 1 5 5 H 1.48500 * 109.47431 * 29.99671 * 3 2 1 6 6 H 1.48492 * 109.47482 * 149.99908 * 3 2 1 7 7 C 1.37872 * 120.00462 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99887 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47431 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.54650 * 68.37092 * 10 9 7 12 12 O 1.42101 * 110.53998 * 291.62518 * 10 9 7 13 13 N 1.65597 * 104.45432 * 179.97438 * 10 9 7 14 14 C 1.46506 * 119.99791 * 64.99519 * 13 10 9 15 15 H 1.08998 * 109.47440 * 335.00346 * 14 13 10 16 16 C 1.52997 * 109.46691 * 95.00526 * 14 13 10 17 17 C 1.53002 * 109.47516 * 60.00182 * 16 14 13 18 18 C 1.52995 * 109.47243 * 59.99768 * 17 16 14 19 19 C 1.53000 * 109.46873 * 300.00193 * 18 17 16 20 20 C 1.52996 * 109.47253 * 60.00379 * 19 18 17 21 21 H 1.08992 * 109.47375 * 59.99693 * 20 19 18 22 22 C 1.53000 * 109.47253 * 179.97438 * 20 19 18 23 23 F 1.39896 * 109.47307 * 179.97438 * 22 20 19 24 24 F 1.39903 * 109.47278 * 299.99723 * 22 20 19 25 25 F 1.39905 * 109.47187 * 59.99564 * 22 20 19 26 26 H 0.96998 * 120.00537 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47617 * 59.99806 * 9 7 2 28 28 H 1.09004 * 109.47118 * 299.99644 * 9 7 2 29 29 H 0.96995 * 120.00100 * 245.27435 * 13 10 9 30 30 H 1.09002 * 109.46832 * 179.97438 * 16 14 13 31 31 H 1.09001 * 109.47659 * 299.99430 * 16 14 13 32 32 H 1.08996 * 109.47049 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.46430 * 299.99512 * 17 16 14 34 34 H 1.08992 * 109.47179 * 60.00148 * 18 17 16 35 35 H 1.08998 * 109.46985 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.47226 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.47708 * 299.99918 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8778 0.0005 11 8 3.1268 -3.9382 1.2375 12 8 3.1267 -3.9381 -1.2365 13 7 1.4797 -5.2341 0.0013 14 6 0.6198 -5.5265 -1.1483 15 1 0.3858 -4.5998 -1.6721 16 6 1.3462 -6.4803 -2.0988 17 6 1.6746 -7.7813 -1.3635 18 6 0.3788 -8.4339 -0.8781 19 6 -0.3475 -7.4801 0.0725 20 6 -0.6761 -6.1792 -0.6628 21 1 -1.3158 -6.3968 -1.5179 22 6 -1.4029 -5.2257 0.2877 23 9 -1.7028 -4.0360 -0.3845 24 9 -2.5879 -5.8227 0.7311 25 9 -0.5822 -4.9463 1.3857 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 1.4895 -5.8327 0.7644 30 1 0.7062 -6.6983 -2.9538 31 1 2.2694 -6.0154 -2.4448 32 1 2.1917 -8.4608 -2.0409 33 1 2.3144 -7.5635 -0.5083 34 1 -0.2610 -8.6515 -1.7333 35 1 0.6128 -9.3604 -0.3539 36 1 -1.2710 -7.9448 0.4181 37 1 0.2922 -7.2624 0.9278 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584836359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:08 Heat of formation + Delta-G solvation = -248.677325 kcal Electronic energy + Delta-G solvation = -26904.625985 eV Core-core repulsion = 22586.155307 eV Total energy + Delta-G solvation = -4318.470678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.86714 -47.38834 -47.26562 -39.28485 -36.09945 -34.98823 -33.48910 -33.31074 -31.83135 -29.46693 -28.99190 -25.40622 -23.52394 -22.80910 -21.98089 -20.12841 -18.57954 -18.15189 -18.00271 -17.67608 -17.13543 -16.35209 -15.81558 -15.43230 -14.87858 -14.60704 -14.52521 -14.18203 -14.10614 -14.09382 -13.73646 -13.54355 -13.47664 -13.41872 -12.83858 -12.72603 -12.45270 -12.39721 -12.03591 -11.80431 -11.47998 -11.40498 -11.15984 -11.09136 -11.06909 -10.89282 -10.75676 -10.69770 -10.58364 -10.26341 -9.80133 -9.52076 -8.82616 -8.67688 -6.28973 -4.40349 1.33266 2.89284 3.23127 3.28448 3.34383 3.51758 3.92378 3.97326 4.11215 4.26387 4.62167 4.67850 4.70930 4.85778 4.96162 5.03638 5.08472 5.14929 5.18553 5.24507 5.27586 5.46404 5.60055 5.71404 5.85083 5.85431 6.01793 6.11012 6.30818 6.33846 6.68191 6.83564 7.37078 7.46734 7.78703 8.61522 9.27142 10.82195 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.017761 B = 0.005852 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.111292 B = 4783.165517 C = 5730.800775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.077 3.923 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.535 4.535 8 H 0.068 0.932 9 C -0.417 4.417 10 S 2.579 3.421 11 O -0.979 6.979 12 O -0.979 6.979 13 N -1.125 6.125 14 C 0.161 3.839 15 H 0.099 0.901 16 C -0.133 4.133 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.138 4.138 21 H 0.123 0.877 22 C 0.451 3.549 23 F -0.172 7.172 24 F -0.190 7.190 25 F -0.174 7.174 26 H 0.268 0.732 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.410 0.590 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 -16.242 -2.722 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.086 0.914 9 C -0.553 4.553 10 S 2.679 3.321 11 O -0.970 6.970 12 O -0.969 6.969 13 N -0.881 5.881 14 C 0.053 3.947 15 H 0.117 0.883 16 C -0.172 4.172 17 C -0.159 4.159 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.159 4.159 21 H 0.141 0.859 22 C 0.397 3.603 23 F -0.153 7.153 24 F -0.172 7.172 25 F -0.156 7.156 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.245 0.755 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.749 -16.037 -2.852 16.714 hybrid contribution -0.597 1.032 0.533 1.306 sum -4.346 -15.005 -2.319 15.793 Atomic orbital electron populations 1.69967 1.06177 1.27572 1.47309 1.24914 0.94986 0.99508 0.93516 0.86400 0.80043 0.81966 0.78699 1.19937 1.20663 1.19137 1.20288 0.92627 0.88746 1.55744 0.91374 1.27721 1.10378 1.10447 1.06788 1.06017 0.76713 0.75530 0.73831 1.93487 1.71838 1.86277 1.45391 1.93469 1.71510 1.86201 1.45722 1.56126 1.61753 1.43838 1.26420 1.20627 0.87499 0.99428 0.87174 0.88277 1.22022 1.02188 0.95622 0.97335 1.21527 0.97178 0.96389 1.00781 1.21497 0.96944 0.97790 0.98870 1.21601 1.01866 0.93228 0.98956 1.22813 0.98607 0.95604 0.98900 0.85925 1.20529 0.77341 0.81203 0.81223 1.93274 1.93455 1.48842 1.79720 1.93147 1.49824 1.83591 1.90623 1.93184 1.71945 1.94191 1.56267 0.92271 0.89933 0.89482 0.75522 0.90935 0.89092 0.91657 0.91309 0.91575 0.91344 0.90471 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.92 13.29 55.43 0.74 -24.18 16 2 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -14.87 9.13 -34.44 -0.31 -15.18 16 8 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 9 C -0.42 -10.14 5.72 36.01 0.21 -9.93 16 10 S 2.58 54.36 5.30 -107.50 -0.57 53.79 16 11 O -0.98 -23.32 18.08 -57.54 -1.04 -24.36 16 12 O -0.98 -22.23 17.11 -57.54 -0.98 -23.22 16 13 N -1.12 -17.47 3.06 -4.89 -0.01 -17.48 16 14 C 0.16 2.11 2.21 -67.93 -0.15 1.96 16 15 H 0.10 1.39 6.81 -51.93 -0.35 1.04 16 16 C -0.13 -1.49 5.64 -26.73 -0.15 -1.64 16 17 C -0.12 -1.16 5.77 -26.73 -0.15 -1.31 16 18 C -0.11 -0.88 5.92 -26.73 -0.16 -1.04 16 19 C -0.12 -1.07 4.77 -26.73 -0.13 -1.20 16 20 C -0.14 -1.50 2.06 -90.62 -0.19 -1.68 16 21 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 22 C 0.45 6.33 2.69 37.16 0.10 6.43 16 23 F -0.17 -2.89 16.80 2.25 0.04 -2.85 16 24 F -0.19 -2.54 16.80 2.25 0.04 -2.50 16 25 F -0.17 -2.75 14.52 2.25 0.03 -2.72 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.08 1.97 7.44 -51.92 -0.39 1.58 16 28 H 0.09 2.17 8.14 -51.92 -0.42 1.74 16 29 H 0.41 5.61 6.15 -34.47 -0.21 5.40 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.23 7.43 -51.93 -0.39 0.85 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.73 7.45 -51.93 -0.39 0.35 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.62 7.80 -51.93 -0.41 0.21 16 37 H 0.08 0.75 6.16 -51.93 -0.32 0.43 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -33.35 319.29 -7.53 -40.88 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.53 Total: 3.26 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -1.03 Total: -21.55 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.72 Total: -41.67 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -2.02 Total: -47.57 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 0.11 Total: -8.07 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 54.36 SS G_CDS: -0.57 Total: 53.79 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.35 -7.53 -40.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584836359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.799 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds