Wall clock time and date at job start Tue Mar 31 2020 10:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99877 * 2 1 4 4 C 1.50707 * 109.47131 * 275.00243 * 3 2 1 5 5 C 1.38421 * 122.53356 * 269.73610 * 4 3 2 6 6 C 1.33402 * 114.91564 * 179.76215 * 5 4 3 7 7 S 1.75887 * 109.59029 * 0.47846 * 6 5 4 8 8 C 1.33382 * 122.53912 * 90.02554 * 4 3 2 9 9 S 1.65598 * 120.00096 * 180.02562 * 2 1 3 10 10 O 1.42104 * 104.27721 * 333.92388 * 9 2 1 11 11 O 1.42102 * 104.27547 * 206.06991 * 9 2 1 12 12 C 1.81402 * 104.44974 * 89.99935 * 9 2 1 13 13 C 1.53001 * 109.46847 * 186.79437 * 12 9 2 14 14 C 1.50692 * 115.55168 * 299.55239 * 13 12 9 15 15 H 1.08008 * 120.00104 * 95.17132 * 14 13 12 16 16 C 1.37878 * 120.00303 * 275.16456 * 14 13 12 17 17 N 1.31516 * 119.99788 * 7.10904 * 16 14 13 18 18 Si 1.86798 * 120.00191 * 187.10611 * 16 14 13 19 19 H 1.48503 * 109.47025 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47281 * 300.00265 * 18 16 14 21 21 H 1.48502 * 109.47104 * 60.00433 * 18 16 14 22 22 C 1.53005 * 117.49734 * 85.22623 * 13 12 9 23 23 C 1.53002 * 117.49774 * 153.87977 * 13 12 9 24 24 H 1.09005 * 109.47032 * 270.00033 * 1 2 3 25 25 H 1.08997 * 109.47296 * 30.00055 * 1 2 3 26 26 H 1.09003 * 109.47139 * 150.00253 * 1 2 3 27 27 H 1.09001 * 109.47062 * 35.00136 * 3 2 1 28 28 H 1.09003 * 109.47472 * 155.00034 * 3 2 1 29 29 H 1.07991 * 122.54662 * 359.97438 * 5 4 3 30 30 H 1.07993 * 125.20217 * 180.20789 * 6 5 4 31 31 H 1.08002 * 125.20612 * 0.02562 * 8 4 3 32 32 H 1.08996 * 109.47134 * 66.79512 * 12 9 2 33 33 H 1.08996 * 109.46727 * 306.79306 * 12 9 2 34 34 H 0.96997 * 119.99776 * 355.43302 * 17 16 14 35 35 H 1.08999 * 117.49925 * 214.99982 * 22 13 12 36 36 H 1.09004 * 117.49895 * 0.02562 * 22 13 12 37 37 H 1.09008 * 117.49869 * 359.97438 * 23 13 12 38 38 H 1.08994 * 117.49776 * 144.96922 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3413 1.7657 -1.4155 5 6 3.4218 1.4343 -2.2146 6 6 3.3926 1.9537 -3.4430 7 16 1.9434 2.9317 -3.6354 8 6 1.4399 2.5628 -1.9911 9 16 2.2930 -1.4341 -0.0006 10 8 1.3970 -2.3564 0.6043 11 8 3.5395 -1.1193 0.6047 12 6 2.5193 -1.8253 -1.7574 13 6 3.1287 -3.2221 -1.8944 14 6 4.4780 -3.4085 -1.2500 15 1 4.5482 -3.8144 -0.2515 16 6 5.6231 -3.0613 -1.9349 17 7 5.5351 -2.4396 -3.0905 18 14 7.2995 -3.4738 -1.2216 19 1 8.3610 -2.9968 -2.1441 20 1 7.4541 -2.8077 0.0967 21 1 7.4163 -4.9442 -1.0500 22 6 2.1705 -4.4149 -1.8854 23 6 2.8517 -3.9898 -3.1886 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1858 1.1178 0.4343 29 1 4.2258 0.8004 -1.8710 30 1 4.1459 1.8010 -4.2016 31 1 0.5390 2.9264 -1.5195 32 1 3.1865 -1.0918 -2.2100 33 1 1.5539 -1.7989 -2.2628 34 1 4.6662 -2.2842 -3.4926 35 1 2.5161 -5.3345 -1.4133 36 1 1.1059 -4.2045 -1.7823 37 1 2.2349 -3.5000 -3.9422 38 1 3.6456 -4.6294 -3.5740 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590740600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:02 Heat of formation + Delta-G solvation = -12.046952 kcal Electronic energy + Delta-G solvation = -23274.406142 eV Core-core repulsion = 19950.806139 eV Total energy + Delta-G solvation = -3323.600003 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.55146 -37.07543 -36.36983 -35.44435 -35.02368 -31.98382 -30.01688 -28.30250 -27.75814 -25.04990 -24.67084 -22.78004 -21.40699 -19.79551 -18.86615 -18.27978 -17.56481 -17.06492 -16.89950 -15.80392 -15.63779 -15.06863 -14.44774 -14.01018 -13.73537 -13.68084 -13.22557 -13.00077 -12.92474 -12.73186 -12.56844 -12.41466 -12.15408 -11.83987 -11.73973 -11.29948 -11.17751 -11.08395 -11.01151 -10.78495 -10.76031 -10.62553 -10.35370 -10.09227 -9.71319 -8.97598 -8.74584 -8.65792 -8.49284 -8.36870 -8.28152 -6.46448 -4.25062 0.90877 1.11432 1.72068 2.02813 2.70057 3.40048 3.44426 3.48331 3.64883 4.47415 4.52143 4.78591 4.83527 4.97537 5.01461 5.06490 5.20750 5.32532 5.50977 5.54451 5.58346 5.64096 5.79751 5.81172 5.86881 6.02258 6.09916 6.17553 6.23768 6.37231 6.48830 6.53485 6.55602 6.73475 6.79927 7.02655 7.17040 8.03571 8.32706 8.76294 9.53850 10.93244 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.006363 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.130374 B = 4399.337593 C = 5245.564818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.009 6.009 3 C 0.173 3.827 4 C -0.121 4.121 5 C -0.131 4.131 6 C -0.197 4.197 7 S 0.075 5.925 8 C -0.200 4.200 9 S 2.613 3.387 10 O -0.969 6.969 11 O -0.942 6.942 12 C -0.566 4.566 13 C 0.024 3.976 14 C -0.593 4.593 15 H 0.061 0.939 16 C 0.042 3.958 17 N -0.896 5.896 18 Si 1.060 2.940 19 H -0.281 1.281 20 H -0.281 1.281 21 H -0.285 1.285 22 C -0.192 4.192 23 C -0.164 4.164 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.151 0.849 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.275 0.725 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.244 10.819 0.196 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.844 5.844 3 C 0.045 3.955 4 C -0.136 4.136 5 C -0.160 4.160 6 C -0.332 4.332 7 S 0.338 5.662 8 C -0.337 4.337 9 S 2.710 3.290 10 O -0.959 6.959 11 O -0.933 6.933 12 C -0.698 4.698 13 C 0.021 3.979 14 C -0.630 4.630 15 H 0.079 0.921 16 C -0.166 4.166 17 N -0.529 5.529 18 Si 0.888 3.112 19 H -0.206 1.206 20 H -0.206 1.206 21 H -0.212 1.212 22 C -0.229 4.229 23 C -0.204 4.204 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.169 0.831 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.975 11.440 -0.441 13.953 hybrid contribution -1.325 -0.811 0.386 1.601 sum -9.300 10.630 -0.055 14.124 Atomic orbital electron populations 1.21365 0.79266 1.02471 1.01790 1.57920 1.14721 1.21532 1.90208 1.19980 0.98862 0.85468 0.91181 1.19480 0.95152 1.00005 0.98972 1.20396 1.00013 1.02024 0.93587 1.25641 1.01813 1.04262 1.01453 1.84129 1.18739 1.50429 1.12945 1.25424 1.04250 1.06257 0.97762 1.05058 0.73377 0.72118 0.78436 1.93492 1.65464 1.62128 1.74855 1.93525 1.43148 1.82256 1.74330 1.30192 1.07283 1.09060 1.23314 1.18554 0.95347 0.84353 0.99628 1.21378 0.89126 1.49081 1.03372 0.92090 1.25772 1.03236 0.92241 0.95322 1.70764 1.29137 1.35292 1.17700 0.83673 0.74987 0.76541 0.76049 1.20646 1.20642 1.21175 1.23046 0.96500 1.00800 1.02539 1.22782 1.02255 1.04817 0.90497 0.92578 0.91581 0.91418 0.89504 0.87511 0.83114 0.81545 0.82062 0.85326 0.88499 0.91381 0.89277 0.90740 0.91290 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 10.22 59.85 0.61 1.81 16 2 N -1.01 -15.71 3.10 -123.05 -0.38 -16.09 16 3 C 0.17 2.39 5.89 -5.19 -0.03 2.36 16 4 C -0.12 -1.66 5.38 -106.25 -0.57 -2.24 16 5 C -0.13 -2.02 8.61 -41.20 -0.35 -2.38 16 6 C -0.20 -2.75 11.23 29.04 0.33 -2.42 16 7 S 0.07 0.87 23.34 -107.50 -2.51 -1.64 16 8 C -0.20 -2.32 10.84 29.04 0.31 -2.01 16 9 S 2.61 54.34 5.01 -107.50 -0.54 53.81 16 10 O -0.97 -21.88 17.09 -57.54 -0.98 -22.87 16 11 O -0.94 -22.50 16.07 -57.54 -0.92 -23.43 16 12 C -0.57 -11.94 5.98 37.16 0.22 -11.72 16 13 C 0.02 0.57 0.95 -155.66 -0.15 0.42 16 14 C -0.59 -16.28 7.92 -34.44 -0.27 -16.56 16 15 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 16 C 0.04 1.15 5.39 -17.82 -0.10 1.05 16 17 N -0.90 -25.05 13.57 55.43 0.75 -24.30 16 18 Si 1.06 25.00 29.91 -169.99 -5.08 19.92 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 22 C -0.19 -4.22 9.95 -26.69 -0.27 -4.48 16 23 C -0.16 -3.69 8.74 -26.70 -0.23 -3.92 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.63 7.94 -51.93 -0.41 0.21 16 26 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 27 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 28 H 0.11 1.62 6.80 -51.93 -0.35 1.26 16 29 H 0.15 2.66 7.66 -52.49 -0.40 2.26 16 30 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.13 2.77 5.90 -51.93 -0.31 2.46 16 33 H 0.10 1.76 8.11 -51.93 -0.42 1.34 16 34 H 0.27 7.53 6.17 -40.82 -0.25 7.28 16 35 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 38 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -32.38 343.61 -10.13 -42.51 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.14 Total: 7.00 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: -0.50 Total: -40.08 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.37 Total: -40.39 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -1.91 Total: -46.30 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Atomic # 16 Polarization: 55.22 SS G_CDS: -3.05 Total: 52.17 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.38 -10.13 -42.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590740600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.461 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds